Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: XL628S_J4155S_OTH1209020

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os XI-adm: Xiangling628S | XL628S

Os XI-adm: Jing4155S | J4155S

Chr12

9021855

9021862

SV Length:

Query Start:

Query End:

Allele sv Count:

410 bp

9276470

9276879

21

Gene_id	Chromosome	Start	End
OsJ4155_12g0103300	Chr12	9274739	9280175

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
XL628S_117425_OTH1213330	Chr12	9021855	9021862	9276571	9276980	410
XL628S_125827_OTH1210790	Chr12	9021855	9021862	9127621	9128030	410
XL628S_127564_OTH1210640	Chr12	9021855	9021862	9067564	9067973	410
XL628S_127652_OTH1212200	Chr12	9021855	9021862	9150738	9151147	410
XL628S_132278_OTH1216110	Chr12	9021855	9021862	9728101	9728493	393
XL628S_132424_OTH1209580	Chr12	9021855	9021862	9106270	9106679	410
XL628S_Basmati1_OTH1214620	Chr12	9021855	9021862	9871355	9871764	410
XL628S_CN1_OTH1209420	Chr12	9021855	9021862	9110220	9110629	410
XL628S_D62_OTH1209710	Chr12	9021855	9021862	9218364	9218773	410
XL628S_FS32_OTH1208750	Chr12	9021855	9021862	9144317	9144726	410
XL628S_G8_OTH1208390	Chr12	9021855	9021862	9186868	9187277	410
XL628S_HZ_OTH1209350	Chr12	9021855	9021862	9071107	9071516	410
XL628S_IR64_OTH1207520	Chr12	9021855	9021862	9033697	9034106	410
XL628S_J4155_OTH1208730	Chr12	9021855	9021862	9308964	9309373	410
XL628S_J4155S_OTH1209020	Chr12	9021855	9021862	9276470	9276879	410
XL628S_NamRoo_OTH1215280	Chr12	9021855	9021862	9320625	9321017	393
XL628S_R527_OTH1208380	Chr12	9021855	9021862	8963016	8963425	410
XL628S_S548_OTH1208300	Chr12	9021855	9021862	9191126	9191535	410
XL628S_TM_OTH1210770	Chr12	9021855	9021862	9112573	9112982	410
XL628S_WSSM_OTH1209440	Chr12	9021855	9021862	9011596	9012005	410
XL628S_Y58S_OTH1209500	Chr12	9021855	9021862	9270237	9270646	410

>XL628S_J4155S_OTH1209020
GGCCTGTTTGGTTGGGGGGAGTTTTTAGAAGGGATTGGGAGTTTAGAGGGTTGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGAATGGGGATGGGGAATTGAGCAAGGAACTCCTTCCTTTTCAACATCTGGGTAGGGGCAGGTAATTGGGAGGGAAGTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTATCAATTTCCATCACCTCTACCAAACAAGATATTAAGATTAAAAATCAAATTCCCATCTTAATCTCATCATCAATTTCCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGGAGATACCATGAGGTACGAGGTACCATGAGG