Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Azucena_J4155S_OTH1219150

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os GJ-trop1: Azucena | AzucenaRS1

Os XI-adm: Jing4155S | J4155S

Chr12

9567578

9567585

SV Length:

Query Start:

Query End:

Allele sv Count:

410 bp

9276470

9276879

21

Gene_id	Chromosome	Start	End
OsJ4155_12g0103300	Chr12	9274739	9280175

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Azucena_117425_OTH1213040	Chr12	9567578	9567585	9276571	9276980	410
Azucena_125827_OTH1218160	Chr12	9567578	9567585	9127621	9128030	410
Azucena_127564_OTH1218070	Chr12	9567578	9567585	9067564	9067973	410
Azucena_127652_OTH1217600	Chr12	9567578	9567585	9150738	9151147	410
Azucena_132278_OTH1206790	Chr12	9567578	9567585	9728101	9728493	393
Azucena_132424_OTH1218500	Chr12	9567578	9567585	9106270	9106679	410
Azucena_Basmati1_OTH1212220	Chr12	9567578	9567585	9871355	9871764	410
Azucena_CN1_OTH1217990	Chr12	9567578	9567585	9110220	9110629	410
Azucena_D62_OTH1217910	Chr12	9567578	9567585	9218364	9218773	410
Azucena_FS32_OTH1218670	Chr12	9567578	9567585	9144317	9144726	410
Azucena_G8_OTH1219010	Chr12	9567578	9567585	9186868	9187277	410
Azucena_HZ_OTH1218600	Chr12	9567578	9567585	9071107	9071516	410
Azucena_IR64_OTH1218420	Chr12	9567578	9567585	9033697	9034106	410
Azucena_J4155_OTH1218860	Chr12	9567578	9567585	9308964	9309373	410
Azucena_J4155S_OTH1219150	Chr12	9567578	9567585	9276470	9276879	410
Azucena_NamRoo_OTH1208940	Chr12	9567578	9567585	9320625	9321017	393
Azucena_R527_OTH1218200	Chr12	9567578	9567585	8963016	8963425	410
Azucena_S548_OTH1218210	Chr12	9567578	9567585	9191126	9191535	410
Azucena_TM_OTH1217430	Chr12	9567578	9567585	9112573	9112982	410
Azucena_WSSM_OTH1218180	Chr12	9567578	9567585	9011596	9012005	410
Azucena_Y58S_OTH1218920	Chr12	9567578	9567585	9270237	9270646	410

>Azucena_J4155S_OTH1219150
GGCCTGTTTGGTTGGGGGGAGTTTTTAGAAGGGATTGGGAGTTTAGAGGGTTGAGGCTATTAAGTGTTTTATTTTGTTGGGAGACATGACAATTTTGGTGGAATGGGGATGGGGAATTGAGCAAGGAACTCCTTCCTTTTCAACATCTGGGTAGGGGCAGGTAATTGGGAGGGAAGTCCTCCTTTACTTTTTCTAAGCAAATCTCAGCCATCCATTTTTATTAATGACCTAATCTCCAACTAAACTCTCTATCAATTTCCATCACCTCTACCAAACAAGATATTAAGATTAAAAATCAAATTCCCATCTTAATCTCATCATCAATTTCCTCGTGTAAACTCCCAATCCCCTTCCCTCGAGTTACCAAACAAGCCGTAAGGAGATACCATGAGGTACGAGGTACCATGAGG