Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: XL628S_J4155S_INS1209030

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os XI-adm: Xiangling628S | XL628S

Os XI-adm: Jing4155S | J4155S

Chr12

9023605

SV Length:

Query Start:

Query End:

Allele sv Count:

120 bp

9278652

9278771

39

Gene_id	Chromosome	Start	End
OsJ4155_12g0103300	Chr12	9274739	9280175

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
XL628S_02428_INS1218330	Chr12	9023605	9023605	9241274	9241393	120
XL628S_117425_INS1213340	Chr12	9023605	9023605	9278722	9278839	118
XL628S_125827_INS1210800	Chr12	9023605	9023605	9129776	9129895	120
XL628S_127564_INS1210650	Chr12	9023605	9023605	9069746	9069865	120
XL628S_127652_INS1212210	Chr12	9023605	9023605	9152889	9153006	118
XL628S_127742_INS1206380	Chr12	9023605	9023605	8985893	8986012	120
XL628S_128077_INS1217000	Chr12	9023605	9023605	9162612	9162731	120
XL628S_132278_INS1216130	Chr12	9023605	9023605	9729833	9729952	120
XL628S_132424_INS1209590	Chr12	9023605	9023605	9108452	9108571	120
XL628S_Basmati1_INS1214630	Chr12	9023605	9023605	9873506	9873623	118
XL628S_CN1_INS1209430	Chr12	9023605	9023605	9112402	9112521	120
XL628S_D62_INS1209720	Chr12	9023605	9023605	9220546	9220665	120
XL628S_DHX2_INS1218200	Chr12	9023605	9023605	9228198	9228317	120
XL628S_FH838_INS1207340	Chr12	9023605	9023605	8925854	8925973	120
XL628S_FS32_INS1208760	Chr12	9023605	9023605	9146499	9146618	120
XL628S_G630_INS1210010	Chr12	9023605	9023605	9049465	9049584	120
XL628S_G8_INS1208400	Chr12	9023605	9023605	9189050	9189169	120
XL628S_HZ_INS1209360	Chr12	9023605	9023605	9073289	9073408	120
XL628S_II32_INS1206160	Chr12	9023605	9023605	8971710	8971829	120
XL628S_IR64_INS1207530	Chr12	9023605	9023605	9035879	9035998	120
XL628S_J4155_INS1208740	Chr12	9023605	9023605	9311146	9311265	120
XL628S_J4155S_INS1209030	Chr12	9023605	9023605	9278652	9278771	120
XL628S_Kosh_INS1217960	Chr12	9023605	9023605	9198652	9198771	120
XL628S_KY131_INS1217610	Chr12	9023605	9023605	9089299	9089418	120
XL628S_Lemont_INS1217950	Chr12	9023605	9023605	9279331	9279450	120
XL628S_NamRoo_INS1215300	Chr12	9023605	9023605	9322357	9322476	120
XL628S_Nipponbare_INS1217690	Chr12	9023605	9023605	9808874	9808993	120
XL628S_R498_INS1208210	Chr12	9023605	9023605	8671691	8671808	118
XL628S_R527_INS1208390	Chr12	9023605	9023605	8965198	8965317	120
XL628S_R9311_INS1206970	Chr12	9023605	9023605	9074666	9074785	120
XL628S_S548_INS1208310	Chr12	9023605	9023605	9193308	9193427	120
XL628S_TM_INS1210780	Chr12	9023605	9023605	9114755	9114874	120
XL628S_Tumba_INS1206760	Chr12	9023605	9023605	9378226	9378345	120
XL628S_WSSM_INS1209450	Chr12	9023605	9023605	9013778	9013897	120
XL628S_Y3551_INS1206970	Chr12	9023605	9023605	8813720	8813839	120
XL628S_Y58S_INS1209510	Chr12	9023605	9023605	9272419	9272538	120
XL628S_ZH11_INS1218030	Chr12	9023605	9023605	9160219	9160338	120
XL628S_OglaRS2_INS1220400	Chr12	9023605	9023605	8571693	8571812	120
XL628S_MH63RS3_INS1206670	Chr12	9023605	9023605	8817754	8817873	120

>XL628S_J4155S_INS1209030
AAATGCACACAAACAGGTGGCGCATAGTAATAGACACACATACAGGGGCATCAGTTTTGCAATCCAGTGCACTAGAATTGACTGATAGATATTTTACATCGGATTAACATAGCATACATT