Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsZS97_10G0337000 OGI:10048420 | 16/16 Zhenshan 97 | ZS97RS3 | HZAU Chr10:21504365-21506740
Gene Symbol Rf4, Rf-4, PPR782a, PPR9, PPR3
DNA seq

ATGGCGCGCCGCGCCGCTTCCCGCGCTGTTGGCGCCCTTCGCTCGGACGGCTCGATCCAAGGGCGAGGAGGCCGCGCGGGGGGCAGTGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGGCGTGGCAGGGGCGCCTCGATCTACGGCTTGAACCGCGCCCTCGCCGACGTCGCGCGTCACAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGGCAAGGTAACTCCCACCGTGCACACCTATGCCATCCTCATCGGCTGCTGCTGCCGTGCGGACCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCGTCAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACTCCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCCGCAGAATGACCGAGCTCAGCTGCATGCCAGATGTTTTCTCCTGCACCATTCTTCTCAAGGGTCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGCTGCTGCACATGATGGCTGATGATCGAGGAGGAGGTAGCGCACCTGATGTGGTGTCGTATACCACTGTCATCAATGGCTTCTTCAAAGAGGGGGATTCAGACAAAGCTTACAGTACATACCATGAAATGCTTGATCGGAGGATTTCACCAGATGTTGTGACTTACAGCTCTATTATTGCTGCGTTATGCAAGGGTCAAGCTATGGACAAAGCCATGGAGGTACTTACCAGCATGGTTAAGAATGGTGTCATGCCTAATTGCATGACATATAATAGTATTCTGCATGGATATTGCTCTTCAGAGCAGCCGAAAGAGGCTATTGGATTTCTCAAAAAGATGCGCAGTGATGGTGTCGAACCAGATGTTGTTACTTATAACTCGCTCATGGATTATCTTTGCAAGAACGGAAGATCCACCGAAGCTAGAAAGATTTTTGATTCTATGACCAAGAGGGGCCTAGAGCCTGATATTGCTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGCTCTCTTGGATTTGATGGTACGAAACGGTATCCACCCTAATCATTATGTTTTCAGCATTCTAGTATGTGCATACGCTAAACAAGAGAAAGTAGAAGAGGCAATGCTTGTGTTCAGCAAAATGAGGCAGCAAGGATTGAATCCGAATGCAGTGACGTATGGAGCAGTTATAGGCATACTTTGCAAGTCAGGCAGAGTAGAAGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAAGCCCTAACATTATTGTGTATACCTCCCTAATTCATAGTCTCTGTATCTTTGACAAATGGGACAAGGCTGAAGAGTTAATTCTTGAAATGTTGGATCGAGGCATCTGTCTGAACACTATTTTCTTTAATTCAATAATTGACAGTCATTGCAAAGAAGGGAGGGTTATAGAATCTGAAAAACTCTTTGACCTGATGGTACGTATTGGTGTGAAGCCCGATATCATTACGTACAGTACTCTCATCGATGGATATTGCTTGGCAGGTAAGATGGATGAAGCAATGAAGTTACTTTCTGGCATGGTCTCAGTTGGGTTGAAACCTAATACTGTTACTTATAGCACTTTGATTAATGGCTACTGCAAAATTAGTAGGATGGAAGACGCGTTAGTTCTTTTTAGGGAGATGGAGAGCAGTGGTGTTAGTCCTGATATTATTACGTATAATATAATTCTGCAAGGTTTATTTCAAACCAGAAGAACTGCTGCTGCAAAAGAACTCTATGTCGGGATTACCAAAAGTGGAACGCAGCTTGAACTTAGCACATACAACATAATCCTTCATGGACTTTGCAAAAACAAACTCACTGATGATGCACTTCGGATGTTTCAGAACCTATGTTTGATGGATTTGAAGCTTGAGGCTAGGACTTTCAACATTATGATTGATGCATTGCTTAAAGTTGGCAGAAATGATGAAGCCAAGGATTTGTTTGTTGCTTTCTCGTCTAACGGTTTAGTGCCGAATTATTGGACGTACAGGTTGATGGCTGAAAATATTATAGGACAGGGGTTGCTAGAAGAATTGGATCAACTCTTTCTTTCAATGGAGGACAATGGCTGTACTGTTGACTCTGGCATGCTAAATTTCATTGTTAGGGAACTGTTGCAGAGAGGTGAGATAACCAGGGCTGGCACTTACCTTTCCATGATTGATGAGAAGCACTTTTCCCTCGAAGCATCCACTGCTTCCTTGTTTATAGATCTTTTGTCTGGGGGAAAATATCAAGAATATCATAGATTTCTCCCTGAAAAATACAAGTCCTTTATAGAATCTTTGAGCTGCTGA

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CDS seq

ATGGCGCGCCGCGCCGCTTCCCGCGCTGTTGGCGCCCTTCGCTCGGACGGCTCGATCCAAGGGCGAGGAGGCCGCGCGGGGGGCAGTGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGGCGTGGCAGGGGCGCCTCGATCTACGGCTTGAACCGCGCCCTCGCCGACGTCGCGCGTCACAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGGCAAGGTAACTCCCACCGTGCACACCTATGCCATCCTCATCGGCTGCTGCTGCCGTGCGGACCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCGTCAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACTCCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCCGCAGAATGACCGAGCTCAGCTGCATGCCAGATGTTTTCTCCTGCACCATTCTTCTCAAGGGTCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGCTGCTGCACATGATGGCTGATGATCGAGGAGGAGGTAGCGCACCTGATGTGGTGTCGTATACCACTGTCATCAATGGCTTCTTCAAAGAGGGGGATTCAGACAAAGCTTACAGTACATACCATGAAATGCTTGATCGGAGGATTTCACCAGATGTTGTGACTTACAGCTCTATTATTGCTGCGTTATGCAAGGGTCAAGCTATGGACAAAGCCATGGAGGTACTTACCAGCATGGTTAAGAATGGTGTCATGCCTAATTGCATGACATATAATAGTATTCTGCATGGATATTGCTCTTCAGAGCAGCCGAAAGAGGCTATTGGATTTCTCAAAAAGATGCGCAGTGATGGTGTCGAACCAGATGTTGTTACTTATAACTCGCTCATGGATTATCTTTGCAAGAACGGAAGATCCACCGAAGCTAGAAAGATTTTTGATTCTATGACCAAGAGGGGCCTAGAGCCTGATATTGCTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGCTCTCTTGGATTTGATGGTACGAAACGGTATCCACCCTAATCATTATGTTTTCAGCATTCTAGTATGTGCATACGCTAAACAAGAGAAAGTAGAAGAGGCAATGCTTGTGTTCAGCAAAATGAGGCAGCAAGGATTGAATCCGAATGCAGTGACGTATGGAGCAGTTATAGGCATACTTTGCAAGTCAGGCAGAGTAGAAGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAAGCCCTAACATTATTGTGTATACCTCCCTAATTCATAGTCTCTGTATCTTTGACAAATGGGACAAGGCTGAAGAGTTAATTCTTGAAATGTTGGATCGAGGCATCTGTCTGAACACTATTTTCTTTAATTCAATAATTGACAGTCATTGCAAAGAAGGGAGGGTTATAGAATCTGAAAAACTCTTTGACCTGATGGTACGTATTGGTGTGAAGCCCGATATCATTACGTACAGTACTCTCATCGATGGATATTGCTTGGCAGGTAAGATGGATGAAGCAATGAAGTTACTTTCTGGCATGGTCTCAGTTGGGTTGAAACCTAATACTGTTACTTATAGCACTTTGATTAATGGCTACTGCAAAATTAGTAGGATGGAAGACGCGTTAGTTCTTTTTAGGGAGATGGAGAGCAGTGGTGTTAGTCCTGATATTATTACGTATAATATAATTCTGCAAGGTTTATTTCAAACCAGAAGAACTGCTGCTGCAAAAGAACTCTATGTCGGGATTACCAAAAGTGGAACGCAGCTTGAACTTAGCACATACAACATAATCCTTCATGGACTTTGCAAAAACAAACTCACTGATGATGCACTTCGGATGTTTCAGAACCTATGTTTGATGGATTTGAAGCTTGAGGCTAGGACTTTCAACATTATGATTGATGCATTGCTTAAAGTTGGCAGAAATGATGAAGCCAAGGATTTGTTTGTTGCTTTCTCGTCTAACGGTTTAGTGCCGAATTATTGGACGTACAGGTTGATGGCTGAAAATATTATAGGACAGGGGTTGCTAGAAGAATTGGATCAACTCTTTCTTTCAATGGAGGACAATGGCTGTACTGTTGACTCTGGCATGCTAAATTTCATTGTTAGGGAACTGTTGCAGAGAGGTGAGATAACCAGGGCTGGCACTTACCTTTCCATGATTGATGAGAAGCACTTTTCCCTCGAAGCATCCACTGCTTCCTTGTTTATAGATCTTTTGTCTGGGGGAAAATATCAAGAATATCATAGATTTCTCCCTGAAAAATACAAGTCCTTTATAGAATCTTTGAGCTGCTGA

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Protein seq

MARRAASRAVGALRSDGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYHRFLPEKYKSFIESLSC

Function Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsZS97_10G0337000 OsZS97_10T0337000.1 Chr10 21504365 21506740 + makerRMon
CDS seq

ATGGCGCGCCGCGCCGCTTCCCGCGCTGTTGGCGCCCTTCGCTCGGACGGCTCGATCCAAGGGCGAGGAGGCCGCGCGGGGGGCAGTGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGGCGTGGCAGGGGCGCCTCGATCTACGGCTTGAACCGCGCCCTCGCCGACGTCGCGCGTCACAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGGCAAGGTAACTCCCACCGTGCACACCTATGCCATCCTCATCGGCTGCTGCTGCCGTGCGGACCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCGTCAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACTCCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCCGCAGAATGACCGAGCTCAGCTGCATGCCAGATGTTTTCTCCTGCACCATTCTTCTCAAGGGTCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGCTGCTGCACATGATGGCTGATGATCGAGGAGGAGGTAGCGCACCTGATGTGGTGTCGTATACCACTGTCATCAATGGCTTCTTCAAAGAGGGGGATTCAGACAAAGCTTACAGTACATACCATGAAATGCTTGATCGGAGGATTTCACCAGATGTTGTGACTTACAGCTCTATTATTGCTGCGTTATGCAAGGGTCAAGCTATGGACAAAGCCATGGAGGTACTTACCAGCATGGTTAAGAATGGTGTCATGCCTAATTGCATGACATATAATAGTATTCTGCATGGATATTGCTCTTCAGAGCAGCCGAAAGAGGCTATTGGATTTCTCAAAAAGATGCGCAGTGATGGTGTCGAACCAGATGTTGTTACTTATAACTCGCTCATGGATTATCTTTGCAAGAACGGAAGATCCACCGAAGCTAGAAAGATTTTTGATTCTATGACCAAGAGGGGCCTAGAGCCTGATATTGCTACCTATTGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGCTCTCTTGGATTTGATGGTACGAAACGGTATCCACCCTAATCATTATGTTTTCAGCATTCTAGTATGTGCATACGCTAAACAAGAGAAAGTAGAAGAGGCAATGCTTGTGTTCAGCAAAATGAGGCAGCAAGGATTGAATCCGAATGCAGTGACGTATGGAGCAGTTATAGGCATACTTTGCAAGTCAGGCAGAGTAGAAGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAAGCCCTAACATTATTGTGTATACCTCCCTAATTCATAGTCTCTGTATCTTTGACAAATGGGACAAGGCTGAAGAGTTAATTCTTGAAATGTTGGATCGAGGCATCTGTCTGAACACTATTTTCTTTAATTCAATAATTGACAGTCATTGCAAAGAAGGGAGGGTTATAGAATCTGAAAAACTCTTTGACCTGATGGTACGTATTGGTGTGAAGCCCGATATCATTACGTACAGTACTCTCATCGATGGATATTGCTTGGCAGGTAAGATGGATGAAGCAATGAAGTTACTTTCTGGCATGGTCTCAGTTGGGTTGAAACCTAATACTGTTACTTATAGCACTTTGATTAATGGCTACTGCAAAATTAGTAGGATGGAAGACGCGTTAGTTCTTTTTAGGGAGATGGAGAGCAGTGGTGTTAGTCCTGATATTATTACGTATAATATAATTCTGCAAGGTTTATTTCAAACCAGAAGAACTGCTGCTGCAAAAGAACTCTATGTCGGGATTACCAAAAGTGGAACGCAGCTTGAACTTAGCACATACAACATAATCCTTCATGGACTTTGCAAAAACAAACTCACTGATGATGCACTTCGGATGTTTCAGAACCTATGTTTGATGGATTTGAAGCTTGAGGCTAGGACTTTCAACATTATGATTGATGCATTGCTTAAAGTTGGCAGAAATGATGAAGCCAAGGATTTGTTTGTTGCTTTCTCGTCTAACGGTTTAGTGCCGAATTATTGGACGTACAGGTTGATGGCTGAAAATATTATAGGACAGGGGTTGCTAGAAGAATTGGATCAACTCTTTCTTTCAATGGAGGACAATGGCTGTACTGTTGACTCTGGCATGCTAAATTTCATTGTTAGGGAACTGTTGCAGAGAGGTGAGATAACCAGGGCTGGCACTTACCTTTCCATGATTGATGAGAAGCACTTTTCCCTCGAAGCATCCACTGCTTCCTTGTTTATAGATCTTTTGTCTGGGGGAAAATATCAAGAATATCATAGATTTCTCCCTGAAAAATACAAGTCCTTTATAGAATCTTTGAGCTGCTGA

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Protein seq

MARRAASRAVGALRSDGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYHRFLPEKYKSFIESLSC

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.3147555 0.9237165 2.8002265

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0495400 SBH 0.828533 0.622825 0.833279
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g35440 SBH 0.438520 0.328626 0.617832
Nipponbare | IRGSP 1.0 | RAP-db Os10g0495400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0015870 SBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0016310 SBH 0.0 0.0 0.263669
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0015700 SBH 2.333456 1.732336 9.671180
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0015910 SBH 0.0 0.021450 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0016040 SBH 2.907954 13.057494 14.280411
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0314300 RBH 0.225445 0.7313595 0.792963
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0015740 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0336700 SBH 14.8875525 14.265312 27.1701235
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0015500 SBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0015580 SBH 0.058650 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0016090 RBH 1.382853 1.473791 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0015830 RBH 0.000000 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0016040 SBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G015660 SBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0015800 SBH 0.492503 2.498747 2.366221
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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