Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_10g0015800 OGI:10048420 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr10:20655565-20664527
Gene Symbol Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR458, PPR7, PPR4
DNA seq

ttatatctgaaaattcagagaatttcttttgaacttcattaattgcttggtcagcaacatagcccaggaaaccaattaaattgatacacatgttgtgtgctctctttagagatcaccatccaaattgacatccaaattaaaaagaagaatttaattatctaaatcatgatgccaatattgagagcttcttttactttccgttgtatacattattctgtgatgtgtaccgaaggttatatacctcaattctggaattgtgctctattgaaccacttgtattcatactgtagtttaccttgtgtcgtttaagtttgtctttgcatatattaatgaatggcatgcttgcacacacacggaaagttctgatttgtgcatgcagtgacaatttttccctttaaaaagtcaaatttggtttacatttttattcatgacacctaaatatgtaaaatgtagtgcattagtaatgtgcaagcactttcgatgtattgtctaaactctaaaggaacaacttaccagtttattagtgaattccggttgccacagagcatgcaagcctagatgagtacatggagaaatggtttggactggatcaatactgggcatgcaacaaattactgcgacagcacgggcaaaggttaattaagcttgccttgcgttctttactgaatggtttatgcatctgtttaggttttatgattacaattttgagtttgcaaatgtttcagtagttttactcaatgccctgtaaccaatcctgtatttgatccaatttagtaatttacgcaattgagtttagaatagtttcacaaatcaattcggagtcaaactatcaattgtttttggtgtttcaggtcttcagactgaagtttcaaagtagcttcatcaaatttttgaaagctttcagagtgattgtggaggtagccatctttgccctccttgtttcaggattgagtatatgagagactgaagtgaaggaggatttgtgcatgaaaaatattgcagaattacttagtatagaattacatacatagtaataaaattctctaaaagataagagtaatctgcttctctctttcttgcagtagcctttggaactaacactactatcaaacgattagctctactaactttcttccttgcaggaggcacaattagcggtgcatctctcatgctctgtgttacttcttttgataagataaactacagtgagaaattattttcatgataaaatgtgcaaaattccatatgtagactgtattttgcttcatactgttttgcatgttcaagaattaattgtattgttatttacttcctcaagtcatagaaaaatccttatatgaaaaaggaatatgacaaattaaagaaagcgtgttatacaagaccatattcatgcttctatgttaatcttgtcaatattggaaagcctggaggttagtgctaactaatataatgcctttttcactcttaccgagttttgtgcccttgcatctattatagattaccgagatatactgaacaatcagtattagagtttgaccagttcaaagggcagtgatgttgatattcaaggtagagtatatggaattttatctgcttgctatctttgctttcctgtttggcataagcatctttaaatcattttctgcagcatggcctaattaataatttctttcgctgatcagacaaggattgattacctccacataaaaacgcagacaagtctaggctttatgtggagtgctccatggttactgataactccaatgctaacatatcttctgaagatgttgattttttgaaatgtaaggtatatttcagtccccttagctctccgagatatgttgtatggcacagtgaaaaagcatctgatgaactcacttcagattgtttattttcaagatagctgaacgcctgaaccttcaactagactcaagtatgagtctgtagtaggtttcaaaagtgaaggttttattatagactagaaagagttacttcttattttacagtattctgctttgattggtatatattttccagtgcaacagaaaagtgcctcaaaccacaatgtgttttgtatatatatagctgcagctttgatttgagacattggagagtcatgatagtttgatcattaaccacattttAaaaatgtaaaatgtataaaatatacaacattgtaattttaccccttgtgacgcgggttccacgtgcacacaaatggtttctctttgtttatttgcatattccacataagtcctccatatttagtgattcattggttcataaattacaatataaatgcagaaactttagtcatatatgtgcatataattgtaagtgaaatgacaagacatgtaattttttgggcaaaatttagctatatcggctgtttcccgttgtttatttctacacatagatgaaaacaccgatcaactgactttgattacgaatgtattaaatgagcgtcaattttagttcagaggttcattcgttagtcatccaagagagtccaccttgcttatcacagaagtttatcttcaagttatgaaatgaccaatattcttttttgtgtaaatacaaataactacagtgataatatacaTtttggttgttttgtagccttgtccagataatcaggaccacatcaagcggaatggatggcttaagtcaagctaattttagatatttattattttgtgtatttgagaggagcaatacctgtactttatagcatagcaagggacggcttgttcctagatggtattgtggatacatgctgattaatttttttctaataactctatcgctcttttagcctaactatctgttctatgtaccattgatgaagcatatattgtgtcgctgtcatttggttgtttcatttgcaatattagttgtcaccgtagcattagcacgggtatgctactagtgaggaggaagaggatttgcttcgccgcgtcggggcgggggggcgtcgcgttgagattcgtgctggggttggggttgggtcggacagtccgtgcaccgcgtccatgtgtgaccggtactggtaccagctccaaatcatctgtagtgttcggatgccccttttccatcctctatacgaaagttgcttaaaaaatcaaattaatccatttttttaaaaaaaattagctaatacttcatatagacatatatatgaatctaaacatatatatatgtatagattcattaacatctatatgaacgtgggcaatgctagaagtcttataatatgaaatggagggagtagtacttaattaatcacgtgctaatggaccactctgttctccgcacgtactgttcctagttgggaactagcaactgcgaacacaccctcaattcatacaatagttatatgtaaaggtatatcttacactattaatatctggtcacgcctgttatacgcacattgcgtcgtgaagtctgtgttgcagctggctacaaatctgtagcccgctacttatctctctcttcttttatctactcgatatgtgtttatagctgacttataatctaatattctacctgctctaaggtggtgtttgaaactaatgaagatgaagatgaagattaaatagatgtaacgtaaaacgagaaattcattagcacataattgattaagtttaagttattacaaacttgacaaattattaattgaaaaaaattctaacggaaatcgagataaaatctaaatctcttttgctacagctatgtatctaggaTttttttataagctggatatttctagcaacataaattcatgatatatatctatgactaccttgataatatttagataatttattttatacacatttcaaataattttaaattttaaatcacattaatgtataaactttaaatttaccgtggatgtgaaatgggataactttagacgcacttttgggtcaaattgacgtccgttttcgggtcgaaagttataggatgatttttttttgagaattacacagtacaacgcagacactcacaacgcacgcacactcatccctatgaaagtacgcgtgcaaatcctacccctatgagcatcttcgaagactgggccggcaaatcatccttgaaattgacgaagtctccacagacgcctcgctgttgaccggtatgtcgtctaccgctgaaagtacaatgccgttaaatactggaaaattcgctcccatggggagtcgaacctaggacctaaggtcctactgaggcatcccgcggtagcgcgataactggtcggttttgggccaaatttgtgcgaccagggtttaccttatcgtttgggccggggttaccgtcaccctgcggtagtgcggtaaccgtctaaaatcgtacaaaaatcacatccaaaatttcgaattcagaacttggcggtttcgggatttcaccgtggttaccgcacggtttaccacgatattcgcacggttatcgcgagctgtgtagctgaaatcatgtaaataaaaaataaataggaaaaaaatcgaaaatacggttgaatatgtgtagaaaactaaaaattgagaataattggaagaatatgtaggatacttaaggcctaatattgtcttcctttttccaatttgtaaactattttcagttttgtccataaatttgaatttagcttactctatttcaaaaaatttcttcaccattagcaagtacaaatcaagaactatatccatgatttttttccaatttttttattttttttccagaattttgaatttggtcaaaattcatctaaaccatatcgccggtttctcctaccgtacccccgcggtaagcgcgataaccgccgcgcgataagtgaaactgtgcgacactaccgaccgaatttgtgccaggtttaggcagattttgggaccactttgggcctaactcacacgtgcatttgggctgaaattacaaacactgatgggatgaatttactctcgttaaatttgccggtaattaaactgagcaacaatcaagagcacatatcagctatgagcctatctgttaacaacatatactattcagtttctccggtgcggcaccaaatattagctcaacaatctgttaccctaatactactaatcttcaggcgcaaagccatgttgtccccccaacgcgaaatcagagggaagcaaacgcgtaatttcttcagaaattacaccgattcactcctattacaggacactgaactgcacgcctcgtattataggacactcctctggtagcaaacgtccagccttgcaagcacaccaccatcctcccattaatttctgatatcaatctgccaaaaaacatgcttgtgatcgaaactaatgcatcatcaaattagtagtagtaggatgtgacttcgaatatccaattgatatcataaaagataaacaatttatctacccgagatatggacatcttgattaaatggaaagtgcaaaggactatcaaacataactggcattcaaacatttgaaagcaaaatgcccagcgtttcagttacttccgtattgtaggttactgtttcagctttcaagctattgacccagcaatgtcatgcctgtagcctgcctataaaaccaaaataaacttttctgcatgcattgttggcataatctaaacaaaatttcagactttccgtagcaattttggatgcaatcagccaaaggatatttgaagtctatacatattaaaagtaagcagcttatccaaacctgcttaattaatttcaaatttacagacaagtgtctgcagaacaaacataaaaactaaaaaggacattttgagcgttgccttcttctctaacaactaatggttagcttggaagaaagctagtattgctaatatatacatgtatacttcaagctagtatggagttttatgaattcaaaaactgaaaatggacagttttgcatcggcaaaagtaaatttaatagcatgcacctcctgactgacagctaaccaaatttgaaaacaggcactaaaaaccattggccaagattatatagcaatgcgtgggaatcaatttacaccgagaaacatgctaacatttacaccaaaaACCGGTGGAAAACCTCTTGGAAAAGAGAATAAAAAACAGGCACTTAaaaaatatagcttggtggcgacattgcttctaagttctaactgccaagacgtgtgtatattttatagtctcttggttaacatgaactaaaacagacatgaggtgatctgcttgctatttacacaaacagagaaaagatacctcctctagtacaactgtagagtgtagtagaaaagaattccaactcagaacttcaaagctgcaaaaagcttcgaagcagttcaaagattctatagaagcctcgtatttttcagggaaaaacctacgatattcttgatatttgctcccagacgattggggaagatccctcctctaatacgactgtaggagaaaagaactccaacacagaatttcaaagctgcaaaaggcttcagcagctcaaagattctataaaggacttatatttttcagggagaaacctatgatattcttgatattttcccccagacaaaagatctaaaaacaaggaagcagtggatgcttcgagggagaagtgcttctcatcaatcatgaacaggtaagtgccagccctggttatatcacccctctgtaacagtttcctaacaatggaatttagcatgcgggagtcggcggaacagccattctcctccattgaaagaaatagatcatccaattcttctagcgacccctgctctataagattttctgccattaaactgtaggtccaaacatctggcactaaaccgttagccgagtgagcagcaaacaaatccttagcttcatccattcttccacatttaagtaaggcaccaatcataatgttaaaagtcctagtctccagctgtaaatccgtcaaacataggttctgaaacattcgaagtgcctcgtcagtgagattgtttttgcaaagtccatgaaggattatgttgtacgtgctaagttcaagctgtgttccacttttggtaatactgacatagagttcttttgcagcagcagttcttctggtatgaaataaaccttgcagaattatgttatacgtaataatattaggactaacaccactgctcaccatctctttgaaaagagctaatgcgtcatccatcctgctaactctacagtagccattaatcaaggtgccataggtaacaatatcaggtttcaccccaactgagaccatgctggcaagtaacttcgttgcttcatccatcttaccagctaagcagcatccatcgataagagtattgtacgtaatgacattgggcttcacaccaatacgtaccatcaggtcAaaaaAGTTTTTCAGATTCTATAACCCTCCCTTCTTTGCAAAGATTGCTAATTATTGAACTAAAGAAAACAGTGTTCGGACAGATGCCACTGTCCAACATTTTAAAAAATAACTCTTCAGCCTTCTCCCACTTGTCATAGGTGCACAGACCATGAATTAGGGGGGTATATACAATGATGTCAGGgggttagtccttcattgatcatctgctttaaggtaagcactgcatcgtatactctgcctagcttgcagagtacatctatgattgttctgtagttcactgcattcggactcaatccttgctgcctcattttgctgaatacaagcattgcctcatctactttttcttgtttagcgtatgcacatattagaatgttgaatacatgatgatccggttggataccatttcgtaccatcaaatccaagagagcatgcatctcaacaagggctcctttggtagcatacccctgaagcagggtaccataggtagcaatatcaggctctaggcccctcttggtcatagaatcgaaaatctttctagcttcggtggatcttccattcttgcaaagataatccatgagcgagctataagtaacaacatctggttcgacaccatcactgcgcatctttttgagtgttccaatagcctcttttggctgccctgaagagcaatatccatgcagaatactattatatgtcatgcaatcaggcatgacaccattcttaaccatggtgttaagtacctccatggctttgtccatagcttgagccttgcataacgcagcaatagtagagttgtaggtcacaacatttggtgaaatcccccgatcaagcatttcatggtatgtactgtatgctttgtccagaaccccctctttgaagaatccattgatgacagtggtatacgacaccacatcaggtgggctacctcctcctcgatcatcagccatcatgtgcagcagctcgagagcttcttggcttctgttctcatcacacagcccgttgagaagaatattgtaggagaagacatttggtatgcatccgagctcggtcattctgcggagcactatgtccattgcgtcgctcgtcctcttgtcggcacagaggcccttgagcagaggagtgaaggtgatggcttccactctaaatcccttcttgacgacattgcccaaggccgcgaaaccgaggtccaagcggcccgcacggcagcagcagccgatgaggatggcataggtgggcacggtgggagttaccttgccggcgccggctcgggccatgcggttgtagcgggacacggcggccgcggggctgtgacgcgcgacgtcggcgagggcgcggttcaagccgtagatcgaggcgcccctgccacgccggagcaattcgtcgaacacgtggcgtgcgtcctcggcgccactgccccccgcgcggcctcctcgcccttggatcgagccctccgagcgtgggacgccgccgccgccaccgccgcgcgggcgggtagggacgcggcgcgccatgcctgcccccgcgggcgccaggcctgacggacagcggcgaacagatcagcgccgccgcgggcgccaggggaagggaggggtgccctcacgt

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CDS seq

atggcgcgccgcgtccctacccgcccgcgcggcggtggcggcggcggcgtcccacgctcggagggctcgatccaagggcgaggaggccgcgcggggggcagtggcgccgaggacgcacgccacgtgttcgacgaattgctccggcgtggcaggggcgcctcgatctacggcttgaaccgcgccctcgccgacgtcgcgcgtcacagccccgcggccgccgtgtcccgctacaaccgcatggcccgagccggcgccggcaaggtaactcccaccgtgcccacctatgccatcctcatcggctgctgctgccgtgcgggccgcttggacctcggtttcgcggccttgggcaatgtcgtcaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggatgcataccaaatgtcttctcctacaatattcttctcaacgggctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcatcaatggattcttcaaagagggggttctggacaaagcatacagtacataccatgaaatgcttgatcgggggatttcaccaaatgttgtgacctacaactctactattgctgcgttatgcaaggctcaagctatggacaaagccatggaggtacttaacaccatggttaagaatggtgtcatgcctgattgcatgacatataatagtattctgcatggatattgctcttcagggcagccaaaagaggctattggaacactcaaaaagatgcgcagtgatggtgtcgaaccagatgttgttacttatagctcgctcatggattatctttgcaagaatggaagatccaccgaagctagaaagattttcgattctatgaccaagaggggcctagagcctgatattgctacctatggtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatgctctcttggatttgatgatataa

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Protein seq

MARRVPTRPRGGGGGGVPRSEGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVPTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGVLDKAYSTYHEMLDRGISPNVVTYNSTIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPDVVTYSSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYGTLLQGYATKGALVEMHALLDLMI

Function Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_10g0015800 OsNaBo_10g0015800.01 Chr10 20660573 20664527 - NAM
CDS seq

atggtacgtattggtgtgaagcccaatgtcattacgtacaatactcttatcgatggatgctgcttagctggtaagatggatgaagcaacgaagttacttgccagcatggtctcagttggggtgaaacctgatattgttacctatggcaccttgattaatggctactgtagagttagcaggatggatgacgcattagctcttttcaaagagatggtgagcagtggtgttagtcctaatattattacgtataacataattctgcaaggtttatttcataccagaagaactgctgctgcaaaagaactctatgtcagtattaccaaaagtggaacacagcttgaacttagcacgtacaacataatccttcatggactttgcaaaaacaatctcactgacgaggcacttcgaatgtttcagaacctatgtttgacggatttacagctggagactaggacttttaacattatgattggtgccttacttaaatgtggaagaatggatgaagctaaggatttgtttgctgctcactcggctaacggtttagtgccagatgtttggacctacagtttaatggcagaaaatcttatagagcaggggtcgctagaagaattggatgatctatttctttcaatggaggagaatggctgttccgccgactcccgcatgctaaattccattgttaggaaactgttacagaggggtgatataaccagggctggcacttacctgttcatgattgatgagaagcacttctccctcgaagcatccactgcttcctttcgtattagaggagggatcttccccaatcgtctgggagcaaatatcaagaatatcattgatatcagaaattaa

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Protein seq

MVRIGVKPNVITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVWTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFRIRGGIFPNRLGANIKNIIDIRN

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Gene Transcript Chromosome Start End Strand Source
OsNaBo_10g0015800 OsNaBo_10g0015800.02 Chr10 20655565 20664436 - NAM
CDS seq

atggcgcgccgcgtccctacccgcccgcgcggcggtggcggcggcggcgtcccacgctcggagggctcgatccaagggcgaggaggccgcgcggggggcagtggcgccgaggacgcacgccacgtgttcgacgaattgctccggcgtggcaggggcgcctcgatctacggcttgaaccgcgccctcgccgacgtcgcgcgtcacagccccgcggccgccgtgtcccgctacaaccgcatggcccgagccggcgccggcaaggtaactcccaccgtgcccacctatgccatcctcatcggctgctgctgccgtgcgggccgcttggacctcggtttcgcggccttgggcaatgtcgtcaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggatgcataccaaatgtcttctcctacaatattcttctcaacgggctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcatcaatggattcttcaaagagggggttctggacaaagcatacagtacataccatgaaatgcttgatcgggggatttcaccaaatgttgtgacctacaactctactattgctgcgttatgcaaggctcaagctatggacaaagccatggaggtacttaacaccatggttaagaatggtgtcatgcctgattgcatgacatataatagtattctgcatggatattgctcttcagggcagccaaaagaggctattggaacactcaaaaagatgcgcagtgatggtgtcgaaccagatgttgttacttatagctcgctcatggattatctttgcaagaatggaagatccaccgaagctagaaagattttcgattctatgaccaagaggggcctagagcctgatattgctacctatggtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatgctctcttggatttgatgatataa

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Protein seq

MARRVPTRPRGGGGGGVPRSEGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVPTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGVLDKAYSTYHEMLDRGISPNVVTYNSTIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPDVVTYSSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYGTLLQGYATKGALVEMHALLDLMI

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.492503 2.498747 2.366221

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0495200 RBH 0.658743 0.419048 0.616906
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g35240 RBH 0.445477 0.281845 0.158804
Nipponbare | IRGSP 1.0 | RAP-db Os10g0495200 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0016060 SBH 0.176219 1.502282 1.657409
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0016130 RBH 0.163027 0.000000 0.213683
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0015520 RBH 0.610800 1.212539 1.200322
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_10g0015870 RBH 0.063017 0.018916 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0015810 RBH 0.000000 2.258897 3.603101
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0314200 SBH 0.150303 0.3048355 0.043563
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0015930 RBH 0.037830 0.006792 0.266487
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0337100 RBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0015700 SBH 0.051787 0.129545 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0015580 SBH 0.058650 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0015900 RBH 1.654729 1.075220 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0015570 SBH 0.331824 0.0 0.009759
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0016240 SBH 0.056753 0.650219 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G015840 SBH 0.387500 0.839234 1.622123
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0015740 SBH 0.000000 2.824416 1.987071
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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