Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0015740 | OGI:10048420 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:20634931-20638215 | ||||||||
| Gene Symbol | PPR1, Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR458, PPR7, PPR4, RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, RF1B, RF1b, Rf-1B, PPR7, - | ||||||||||
| DNA seq | tcagcagctcaaagattctataaaggacttatatttttcagggagaaacctatgatattcttgatattttcccccagacaaaagatctaaaaacaaggaagcagtggatgcttcgagggagaagtgcttctcatcaatcatgaacaggtaagtgccagccctggttatatcacccctctgtaacagtttcctaacaatggaatttagcatgcgggagtcggcggaacagccattctcctccattgaaagaaatagatcatccaattcttctagcgacccctgctctataagattttctgccattaaactgtaggtccaaacatctggcactaaaccgttagccgagtgagcagcaaacaaatccttagcttcatccattcttccacatttaagtaaggcaccaatcataatgttaaaagtcctagtctccagctgtaaatccgtcaaacataggttctgaaacattcgaagtgcctcgtcagtgagattgtttttgcaaagtccatgaaggattatgttgtacgtgctaagttcaagctgtgttccacttttggtaatactgacatagagttcttttgcagcagcagttcttctggtatgaaataaaccttgcagaattatgttatacgtaataatattaggactaacaccactgctcaccatctctttgaaaagagctaatgcgtcatccatcctgctaactctacagtagccattaatcaaggtgccataggtaacaatatcaggtttcaccccaactgagaccatgctggcaagtaacttcgttgcttcatccatcttaccagctaagcagcatccatcgataagagtattgtacgtaatgacattgggcttcacaccaatacgtaccatcaggtcaaaaagtttttcagattctataaccctcccttctttgcaaagattgctaattattgaactaaagaaaacagtgttcggacagatgccactgtccaacattttaaaaaataactcttcagccttctcccacttgtcataggtgcacagaccatgaattagggaggtatacacaataatgttaggggttagtccttcatcgatcatctgctcaaaataaagcatagcatcatctacactgcctgacttgcaaagtacatctataactgttccataggtcactacattcggattcaatccatgctgcctcattttgctgaatacaagcattgcctgatctactttctcttgtttagcgtatgcacatattagaatgttgaatacatgatgatccggttggataccatttcgtaccatcaaatccaagagagcatgcatctcaacaagggctcctttggtagcataCccctgaagcagggtaccataggtagcaatatcaggctctaggcccctcttggtcatagaatcgaaaatctttctagcttcggtgcatcttccattcttgcaaagataattcatcagtgatctataagtaacaacatttggttcgacaccatcactgcgcatcTttttgagtgttccaatagcctcttttggctgccctgaagagcaatatccatgcagaatactattatatgtcatgcaatcaggcatgacaccattcttaaccatggtgttaagtacctccatggctttgtccatagcttgagccttgcataacgcagcaataatagagttgtaggtcacaacatctggtaaaatcccccggtccagcatttcatggtatgtactgtaagctttgtctgaatccccctctttgaagaagccattgaggacagtggtatactacaccacatcaggtgggctacctcctcctcgatcatcagccatcatgtgcagcagctcgagagcttcttggcttctgttctcatcacacagacccttgagaagaatattgtaggagaagacatctggtatgcagccgagctcggtcattctgcggagcactatgtccattgcgtcgctcgtcctcttgtcggcacagaggcccttgagcagaggagtgaaggtgatggcttccactctaaatcccttcttaatgacaccattcttaaccatggtgttaagtacctccatggccttgtccacagtttgagccttgcatagcgcagcaataatagagctgtaggtcacaacatttggcgaaatcctctggtcaagcatttcattgtatgtactgtaagctttgtccagatccccctctttgaagaagccattgaggacagtggtatacgacaccacatcaggtgggctacctcctcctcgatcatcagccatcatgtgcagcagctcgagagcttcttggcttctgttctcatcacacagacccttgagaagaatattgtaggagaagacatttggtatgcagccgagctcggtcattctgcggagcactatgtccattgcgtcgctcgtcctcttgtcggcacagaggcccttgagcagaggagtgaaggtgatggcttccactctaaatcccttcttaatgacaccattcttaaccatggtgttaagtacctccatggccttgtccacagtttgagccttgcatagcgcagcaataatagagctgtaggtcacaacatttggcgaaatcctctggtcaagcatttcattgtatgtactgtaagctttgtccagatccccctctttgaagaagccattgaggacagtggtatacgacaccacatcaggtgggctacctcctcctcgatcatcagccatcatgtgcagcagctcgagagcttcttggcttctgttctcatcacacagcccgttgagaagaatattgtaggagaagacatttggtatgcatccgagctcggtcattctgcggagcactatgtccattgcgtcgctcgtcctcttgtcggcacagaggcccttgagcagaggagtgaaggtgatggcttccactctaaatcccttcttgacgacattgcccaaggccgcgaaaccgaggtccaagcggcccgcacggcagcagcagccgatgaggatggcataggtgggcacggtgggagttaccttgccggcgccggctcgggccatgcggttgtagcgggacacggcggccgcggggctgtgacgcgcgacgtcggcgagggcgcggttcaagccgtagatcgaggcgcccctgccacgccggagcaattcgtcgaacacgtggcgtgcgtcctcggcgccactgccccccgcgcggcctcctcgcccttggatcgagccctccgagcgtgggacgccgccgccgccaccgccgcgcgggcgggtagggacgcggcgcgccat
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| CDS seq | atggcgcgccgcgtccctacccgcccgcgcggcggtggcggcggcggcgtcccacgctcggagggctcgatccaagggcgaggaggccgcgcggggggcagtggcgccgaggacgcacgccacgtgttcgacgaattgctccggcgtggcaggggcgcctcgatctacggcttgaaccgcgccctcgccgacgtcgcgcgtcacagccccgcggccgccgtgtcccgctacaaccgcatggcccgagccggcgccggcaaggtaactcccaccgtgcccacctatgccatcctcatcggctgctgctgccgtgcgggccgcttggacctcggtttcgcggccttgggcaatgtcgtcaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggatgcataccaaatgtcttctcctacaatattcttctcaacgggctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcctcaatggcttcttcaaagagggggatctggacaaagcttacagtacatacaatgaaatgcttgaccagaggatttcgccaaatgttgtgacctacagctctattattgctgcgctatgcaaggctcaaactgtggacaaggccatggaggtacttaacaccatggttaagaatggtgtcattaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggctgcataccaaatgtcttctcctacaatattcttctcaagggtctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcctcaatggcttcttcaaagagggggatctggacaaagcttacagtacatacaatgaaatgcttgaccagaggatttcgccaaatgttgtgacctacagctctattattgctgcgctatgcaaggctcaaactgtggacaaggccatggaggtacttaacaccatggttaagaatggtgtcattaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggctgcataccagatgtcttctcctacaatattcttctcaagggtctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggagagggggattcagacaaagcttacagtacataccatgaaatgctggaccgggggattttaccagatgttgtgacctacaactctattattgctgcgttatgcaaggctcaagctatggacaaagccatggaggtacttaacaccatggttaagaatggtgtcatgcctgattgcatgacatataatagtattctgcatggatattgctcttcagggcagccaaaagaggctattggaacactcaaaaAgatgcgcagtgatggtgtcgaaccaaatgttgttacttatagatcactgatgaattatctttgcaagaatggaagatgcaccgaagctagaaagattttcgattctatgaccaagaggggcctagagcctgatattgctacctatggtaccctgcttcagggGtatgctaccaaaggagcccttgttgagatgcatgctctcttggatttgatggtacgaaatggtatccaaccggatcatcatgtattcaacattctaatatgtgcatacgctaaacaagagaaagtagatcaggcaatgcttgtattcagcaaaatgaggcagcatggattgaatccgaatgtagtgacctatggaacagttatagatgtactttgcaagtcaggcagtgtagatgatgctatgctttattttgagcagatgatcgatgaaggactaacccctaacattattgtgtatacctccctaattcatggtctgtgcacctatgacaagtgggagaaggctgaagagttattttttaaaatgttggacagtggcatctgtccgaacactgttttctttagttcaataattagcaatctttgcaaagaagggagggttatagaatctgaaaaactttttgacctgatggtacgtattggtgtgaagcccaatgtcattacgtacaatactcttatcgatggatgctgcttagctggtaagatggatgaagcaacgaagttacttgccagcatggtctcagttggggtgaaacctgatattgttacctatggcaccttgattaatggctactgtagagttagcaggatggatgacgcattagctcttttcaaagagatggtgagcagtggtgttagtcctaatattattacgtataacataattctgcaaggtttatttcataccagaagaactgctgctgcaaaagaactctatgtcagtattaccaaaagtggaacacagcttgaacttagcacgtacaacataatccttcatggactttgcaaaaacaatctcactgacgaggcacttcgaatgtttcagaacctatgtttgacggatttacagctggagactaggacttttaacattatgattggtgccttacttaaatgtggaagaatggatgaagctaaggatttgtttgctgctcactcggctaacggtttagtgccagatgtttggacctacagtttaatggcagaaaatcttatagagcaggggtcgctagaagaattggatgatctatttctttcaatggaggagaatggctgttccgccgactcccgcatgctaaattccattgttaggaaactgttacagaggggtgatataaccagggctggcacttacctgttcatgattgatgagaagcacttctccctcgaagcatccactgcttccttgtttttagatcttttgtctgggggaaaatatcaagaatatcataggtttctccctgaaaaatataagtcctttatagaatctttgagctgctga
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| Protein seq | MARRVPTRPRGGGGGGVPRSEGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVPTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVLNGFFKEGDLDKAYSTYNEMLDQRISPNVVTYSSIIAALCKAQTVDKAMEVLNTMVKNGVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVLNGFFKEGDLDKAYSTYNEMLDQRISPNVVTYSSIIAALCKAQTVDKAMEVLNTMVKNGVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNILLKGLCDENRSQEALELLHMMADDRGGEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYGTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVTYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTYDKWEKAEELFFKMLDSGICPNTVFFSSIISNLCKEGRVIESEKLFDLMVRIGVKPNVITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVWTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQEYHRFLPEKYKSFIESLSC |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0015740 | OsNaBo_10g0015740.01 | Chr10 | 20634931 | 20638215 | - | NAM | ||
| CDS seq | atggcgcgccgcgtccctacccgcccgcgcggcggtggcggcggcggcgtcccacgctcggagggctcgatccaagggcgaggaggccgcgcggggggcagtggcgccgaggacgcacgccacgtgttcgacgaattgctccggcgtggcaggggcgcctcgatctacggcttgaaccgcgccctcgccgacgtcgcgcgtcacagccccgcggccgccgtgtcccgctacaaccgcatggcccgagccggcgccggcaaggtaactcccaccgtgcccacctatgccatcctcatcggctgctgctgccgtgcgggccgcttggacctcggtttcgcggccttgggcaatgtcgtcaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggatgcataccaaatgtcttctcctacaatattcttctcaacgggctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcctcaatggcttcttcaaagagggggatctggacaaagcttacagtacatacaatgaaatgcttgaccagaggatttcgccaaatgttgtgacctacagctctattattgctgcgctatgcaaggctcaaactgtggacaaggccatggaggtacttaacaccatggttaagaatggtgtcattaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggctgcataccaaatgtcttctcctacaatattcttctcaagggtctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggaggtagcccacctgatgtggtgtcgtataccactgtcctcaatggcttcttcaaagagggggatctggacaaagcttacagtacatacaatgaaatgcttgaccagaggatttcgccaaatgttgtgacctacagctctattattgctgcgctatgcaaggctcaaactgtggacaaggccatggaggtacttaacaccatggttaagaatggtgtcattaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggctgcataccagatgtcttctcctacaatattcttctcaagggtctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggagagggggattcagacaaagcttacagtacataccatgaaatgctggaccgggggattttaccagatgttgtgacctacaactctattattgctgcgttatgcaaggctcaagctatggacaaagccatggaggtacttaacaccatggttaagaatggtgtcatgcctgattgcatgacatataatagtattctgcatggatattgctcttcagggcagccaaaagaggctattggaacactcaaaaAgatgcgcagtgatggtgtcgaaccaaatgttgttacttatagatcactgatgaattatctttgcaagaatggaagatgcaccgaagctagaaagattttcgattctatgaccaagaggggcctagagcctgatattgctacctatggtaccctgcttcagggGtatgctaccaaaggagcccttgttgagatgcatgctctcttggatttgatggtacgaaatggtatccaaccggatcatcatgtattcaacattctaatatgtgcatacgctaaacaagagaaagtagatcaggcaatgcttgtattcagcaaaatgaggcagcatggattgaatccgaatgtagtgacctatggaacagttatagatgtactttgcaagtcaggcagtgtagatgatgctatgctttattttgagcagatgatcgatgaaggactaacccctaacattattgtgtatacctccctaattcatggtctgtgcacctatgacaagtgggagaaggctgaagagttattttttaaaatgttggacagtggcatctgtccgaacactgttttctttagttcaataattagcaatctttgcaaagaagggagggttatagaatctgaaaaactttttgacctgatggtacgtattggtgtgaagcccaatgtcattacgtacaatactcttatcgatggatgctgcttagctggtaagatggatgaagcaacgaagttacttgccagcatggtctcagttggggtgaaacctgatattgttacctatggcaccttgattaatggctactgtagagttagcaggatggatgacgcattagctcttttcaaagagatggtgagcagtggtgttagtcctaatattattacgtataacataattctgcaaggtttatttcataccagaagaactgctgctgcaaaagaactctatgtcagtattaccaaaagtggaacacagcttgaacttagcacgtacaacataatccttcatggactttgcaaaaacaatctcactgacgaggcacttcgaatgtttcagaacctatgtttgacggatttacagctggagactaggacttttaacattatgattggtgccttacttaaatgtggaagaatggatgaagctaaggatttgtttgctgctcactcggctaacggtttagtgccagatgtttggacctacagtttaatggcagaaaatcttatagagcaggggtcgctagaagaattggatgatctatttctttcaatggaggagaatggctgttccgccgactcccgcatgctaaattccattgttaggaaactgttacagaggggtgatataaccagggctggcacttacctgttcatgattgatgagaagcacttctccctcgaagcatccactgcttccttgtttttagatcttttgtctgggggaaaatatcaagaatatcataggtttctccctgaaaaatataagtcctttatagaatctttgagctgctga
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| Protein seq | MARRVPTRPRGGGGGGVPRSEGSIQGRGGRAGGSGAEDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNRMARAGAGKVTPTVPTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVLNGFFKEGDLDKAYSTYNEMLDQRISPNVVTYSSIIAALCKAQTVDKAMEVLNTMVKNGVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVLNGFFKEGDLDKAYSTYNEMLDQRISPNVVTYSSIIAALCKAQTVDKAMEVLNTMVKNGVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNILLKGLCDENRSQEALELLHMMADDRGGEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYGTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVTYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTYDKWEKAEELFFKMLDSGICPNTVFFSSIISNLCKEGRVIESEKLFDLMVRIGVKPNVITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVWTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLDLLSGGKYQEYHRFLPEKYKSFIESLSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 2.824416 | 1.987071 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497366 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35090 | RBH | 0.421598 | 0.068380 | 0.571143 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497432 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016180 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016310 | SBH | 0.0 | 0.0 | 0.263669 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015700 | SBH | 2.333456 | 1.732336 | 9.671180 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016230 | SBH | 0.000000 | 0.077490 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015800 | SBH | 0.0 | 0.0 | 0.667132 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | SBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015740 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0334900 | RBH | 1.6322985 | 4.720067 | 10.706966 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015850 | RBH | 0.060982 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015730 | RBH | 0.200955 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015820 | RBH | 2.711197 | 5.529148 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015830 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016380 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015660 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015790 | RBH | 0.000000 | 0.000000 | 0.568957 |
