Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_10g0015700 | OGI:10048420 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr10:19509503-19510708 | ||||||||
| Gene Symbol | Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR458, PPR7, PPR4, PPR794, PPR6, PPR6-794, PPR5, Rf5, Rf1a, RF1, Rf1 (Rf-1), rf-1, PPR791, PPR8-1, Rf-1, Rf1, Rf-1A, Rf5, Rf1a, RF5, Rf5(t)*(Rf(t)*), RF1A, PPR6, PPR11 | ||||||||||
| DNA seq | atggcgcgccgcgccgcttcccgcgctgctggcgcccttcgctcggagggctcgatccaagggcgagggggccgcgcggggggcagtggcggtggcgcggaggacgcacgccacgtgttcgacgaattgctccgtcgtggcataccagatgtcttctcctacaatattcttctcaacgggctgtgtgatgagaacagaagccaagaagctctcgagttactgcacataatggctgatgatggaggtgactgcccacctgatgtggtgtcgtacagcaccgtcatcaatggcttcttcaaggagggggatctggacaaaatgcttgaccagaggatttcgccaaatgttgtgacctacaactctattattgctgcgctatgcaaggctcaaactgtggacaaggccatggaggtacttaccaccatggttaagagtggtgtcatgcctgattgcatgacatataatagtattgtgcatgggttttgctcttcagggcagccgaaagaggctattgtatttctcaaaaagatgcgcagtgatggtgtcgaaccagatgttgttacttataactcgctcatggattatctttgcaagaacggaagatgcacggaagcaagaaagatttttgattctatgaccaagaggggcctaaagcctgatattactacctatggtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggtacgaaacggtatccaccctaatcattatgttttcagcattctagtatgtgcatacgctaaacaagagaaagtagaagaggcaatgcttgtattcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacctatggaacagttatagatgtactttgcaagtcaggtagagtagaagatgctatgctttattttgagcagatgatcgatgaaggactaagacctgacagcattgtttataactccctaattcatagtctctgtatctttgacaaatgggagaaggctgaagagttatttcttgaaatgttggatcgaggcatctgtcttagcactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctggaaaactctttgacttgatggtacgaattggtgtgaagcccgatatcattacccttggcaggtaa
More
|
||||||||||
| CDS seq | atggctgatgatggaggtgactgcccacctgatgtggtgtcgtacagcaccgtcatcaatggcttcttcaaggagggggatctggacaaaatgcttgaccagaggatttcgccaaatgttgtgacctacaactctattattgctgcgctatgcaaggctcaaactgtggacaaggccatggaggtacttaccaccatggttaagagtggtgtcatgcctgattgcatgacatataatagtattgtgcatgggttttgctcttcagggcagccgaaagaggctattgtatttctcaaaaagatgcgcagtgatggtgtcgaaccagatgttgttacttataactcgctcatggattatctttgcaagaacggaagatgcacggaagcaagaaagatttttgattctatgaccaagaggggcctaaagcctgatattactacctatggtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggtacgaaacggtatccaccctaatcattatgttttcagcattctagtatgtgcatacgctaaacaagagaaagtagaagaggcaatgcttgtattcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacctatggaacagttatagatgtactttgcaagtcaggtagagtagaagatgctatgctttattttgagcagatgatcgatgaaggactaagacctgacagcattgtttataactccctaattcatagtctctgtatctttgacaaatgggagaaggctgaagagttatttcttgaaatgttggatcgaggcatctgtcttagcactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctggaaaactctttgacttgatggtacgaattggtgtgaagcccgatatcattacccttggcaggtaa
More
|
||||||||||
| Protein seq | MADDGGDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR |
||||||||||
| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_10g0015700 | OsCMeo_10g0015700.01 | Chr10 | 19509503 | 19510708 | + | NAM | ||
| CDS seq | atggctgatgatggaggtgactgcccacctgatgtggtgtcgtacagcaccgtcatcaatggcttcttcaaggagggggatctggacaaaatgcttgaccagaggatttcgccaaatgttgtgacctacaactctattattgctgcgctatgcaaggctcaaactgtggacaaggccatggaggtacttaccaccatggttaagagtggtgtcatgcctgattgcatgacatataatagtattgtgcatgggttttgctcttcagggcagccgaaagaggctattgtatttctcaaaaagatgcgcagtgatggtgtcgaaccagatgttgttacttataactcgctcatggattatctttgcaagaacggaagatgcacggaagcaagaaagatttttgattctatgaccaagaggggcctaaagcctgatattactacctatggtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggtacgaaacggtatccaccctaatcattatgttttcagcattctagtatgtgcatacgctaaacaagagaaagtagaagaggcaatgcttgtattcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacctatggaacagttatagatgtactttgcaagtcaggtagagtagaagatgctatgctttattttgagcagatgatcgatgaaggactaagacctgacagcattgtttataactccctaattcatagtctctgtatctttgacaaatgggagaaggctgaagagttatttcttgaaatgttggatcgaggcatctgtcttagcactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctggaaaactctttgacttgatggtacgaattggtgtgaagcccgatatcattacccttggcaggtaa
More
|
|||||||
| Protein seq | MADDGGDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.333456 | 1.732336 | 9.671180 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497300 | SBH | 0.203808 | 0.658216 | 0.377032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35436 | SBH | 0.338377 | 0.442807 | 0.161691 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497366 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015890 | RBH | 0.092648 | 0.0 | 0.752496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016310 | RBH | 0.0 | 0.0 | 0.263669 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015520 | RBH | 0.610800 | 1.212539 | 1.200322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016190 | RBH | 0.114349 | 0.029829 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015860 | RBH | 0.0 | 0.000000 | 3.064457 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0312500 | SBH | 1.4509705 | 1.9705075 | 1.5231955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015930 | RBH | 0.037830 | 0.006792 | 0.266487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0337100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015700 | RBH | 0.051787 | 0.129545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015570 | SBH | 0.058789 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015820 | SBH | 2.711197 | 5.529148 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015610 | SBH | 0.118714 | 0.0 | 0.047110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016230 | RBH | 0.101475 | 0.606144 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015840 | RBH | 0.387500 | 0.839234 | 1.622123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016000 | RBH | 0.135837 | 0.753253 | 1.725822 |
