Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_10g0016000 | OGI:10048420 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr10:20836129-20838752 | ||||||||
| Gene Symbol | Rf4, Rf-4, PPR782a, PPR9, PPR3, PPR794, PPR6, PPR6-794, PPR5, Rf5, Rf1a | ||||||||||
| DNA seq | TTTTTTTTCCCCCAGGAGCGCCGCGCAGAAGAGATCGATCGCGATCTCCCTGCCCCGACGTCGCCGGCCGATCTCTCATTCTCTCCACGCCCTGCTCGTCGCCGATCTCCTACACCATCCCTGCCATCTCCTCCTTCCccctcccctctatcctccactggtgccgcccacctctccgtataagacaaactgcgttgcggcgttggtttccgccggcgctgctgctgcacctgtcagctagggcgggcatggcgcgccgcgccgcttcccgcgctgttggcgcccttcgctcggacggctcgatccaagggcgaggaggccgcgcggggggcagtggcgccgaggacgcacgccacgtgttcgacgaattgctccgccgtggcaggggcgcctcgatctacggcttgaaccgcgcccTcgccgacgtcgcgcgtcacagccccgcggccgccgtgtcccgctacaaccgcatggcccgagccggcgccggcaaggtaactcccaccgtgcacacctatgccatcctcatcggctgctgctgccgcgcgggccgcttggacctcggtttcgcggccttgggcaatgtcattaagaagggatttagagtggaagccatcaccttcactcctctgctcaagggcctctgtgccgacaagaggacgagcgacgcaatggacatagtgctccgcagaatgaccgagctcggctgcataccaaatgttttctcctgcaccattcttctcaagggtctgtgtgatgagaacagaagccaagaagctctcgagctgctgcacatgatggctgatgatcgaggaggaggtagcgcacctgatgtggtgtcgtataccactgtcatcaatggcttcttcaaagagggggattcagacaaagcttacagtacataccatgaaatgcttgatcggaggatttcaccagatgttgtgacttacagctctattattgctgcgttatgcaagggtcaagctatggacaaagccatggaggtacttaccacgatggttaagaatggtgtcatgcctgattgcatgacatataatagtattctgcatggatattgctcttcagagcagccgaaagaggctattggatttctcAaaaagatgcgcagtgatggtgtcgaaccagatgttgttacttataactcgctcatggattatctttgcaagaacggaagatgcaccgaagctagaaagatgttcgattctatgaccaagaGgggcctagagcctgatattgctacctatggtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggtacgaaacggtatccaccctaatcattatgttttcagcattctaatatgtgcatacgctaaacaaGggaaagtagatcaggcaatgcttgtgttcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacgtatggagcagTtataggcatactttgcaagtcaggcagtgtagacgatgctatgcTTtattttgagcagatgatcgatgaaggactaagccctaacattattgtgtatacctccctaattcatggtctgtgcacctgtgacaaatgggacaaggctgaagagttaattcttgaaatgttggatcgaggcatctgtctgaacactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctgaaaaactctttgacctgatggtacgtattggtgtgaagcccaatgtcattacgtacagtactcttatcgatggatgctgcttagctggtaagatggatgaagcaacgaagttacttgccagcatggtctcagttggggtgaaAcctaatactgttacttatagaactttgattaatggctactgcaaaattagtaggatggatgacgcattagctcttttcaaagagatggtgagcagtggtgttagtcctaatattattacgtataacataattctgcaaggttTAtttcaaaccagaagaactgctgctgcaaaagaactctatgtcgggattaccaaaagtggaacgcagattgaacttagcacatacaacataatccttcatggactttgcaaaaacaaactcactgatgatgcacttcggatgtttcagaacctatgtttgatggatttgaagcttgaggctaggactttcaacatTAtgattgatgcattgcttaaagttggcagaaatgatgaagccaaggatttgtttgttgctttctcgtctaacggtttagtgccgaattattggacgtacagattgatggctgaaaataTtataggacaggggttgctagaagaattggatcaactctttctttcaatggaggacaatggctgtactgttgactctggcatgctAaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggAaaatatcaagaatatcatagatttctccctgaaaaatacaagtcctttatagaatctttgagctgctga
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| CDS seq | atggctgatgatcgaggaggaggtagcgcacctgatgtggtgtcgtataccactgtcatcaatggcttcttcaaagagggggattcagacaaagcttacagtacataccatgaaatgcttgatcggaggatttcaccagatgttgtgacttacagctctattattgctgcgttatgcaagggtcaagctatggacaaagccatggaggtacttaccacgatggttaagaatggtgtcatgcctgattgcatgacatataatagtattctgcatggatattgctcttcagagcagccgaaagaggctattggatttctcAaaaagatgcgcagtgatggtgtcgaaccagatgttgttacttataactcgctcatggattatctttgcaagaacggaagatgcaccgaagctagaaagatgttcgattctatgaccaagaGgggcctagagcctgatattgctacctatggtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggtacgaaacggtatccaccctaatcattatgttttcagcattctaatatgtgcatacgctaaacaaGggaaagtagatcaggcaatgcttgtgttcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacgtatggagcagTtataggcatactttgcaagtcaggcagtgtagacgatgctatgcTTtattttgagcagatgatcgatgaaggactaagccctaacattattgtgtatacctccctaattcatggtctgtgcacctgtgacaaatgggacaaggctgaagagttaattcttgaaatgttggatcgaggcatctgtctgaacactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctgaaaaactctttgacctgatggtacgtattggtgtgaagcccaatgtcattacgtacagtactcttatcgatggatgctgcttagctggtaagatggatgaagcaacgaagttacttgccagcatggtctcagttggggtgaaAcctaatactgttacttatagaactttgattaatggctactgcaaaattagtaggatggatgacgcattagctcttttcaaagagatggtgagcagtggtgttagtcctaatattattacgtataacataattctgcaaggttTAtttcaaaccagaagaactgctgctgcaaaagaactctatgtcgggattaccaaaagtggaacgcagattgaacttagcacatacaacataatccttcatggactttgcaaaaacaaactcactgatgatgcacttcggatgtttcagaacctatgtttgatggatttgaagcttgaggctaggactttcaacatTAtgattgatgcattgcttaaagttggcagaaatgatgaagccaaggatttgtttgttgctttctcgtctaacggtttagtgccgaattattggacgtacagattgatggctgaaaataTtataggacaggggttgctagaagaattggatcaactctttctttcaatggaggacaatggctgtactgttgactctggcatgctAaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggAaaatatcaagaatatcatagatttctccctgaaaaatacaagtcctttatagaatctttgagctgctga
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| Protein seq | MADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPDCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLEPDIATYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLSPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGCCLAGKMDEATKLLASMVSVGVKPNTVTYRTLINGYCKISRMDDALALFKEMVSSGVSPNIITYNIILQGLFQTRRTAAAKELYVGITKSGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYHRFLPEKYKSFIESLSC |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_10g0016000 | OsNaBo_10g0016000.01 | Chr10 | 20836129 | 20838752 | + | NAM | ||
| CDS seq | atggctgatgatcgaggaggaggtagcgcacctgatgtggtgtcgtataccactgtcatcaatggcttcttcaaagagggggattcagacaaagcttacagtacataccatgaaatgcttgatcggaggatttcaccagatgttgtgacttacagctctattattgctgcgttatgcaagggtcaagctatggacaaagccatggaggtacttaccacgatggttaagaatggtgtcatgcctgattgcatgacatataatagtattctgcatggatattgctcttcagagcagccgaaagaggctattggatttctcAaaaagatgcgcagtgatggtgtcgaaccagatgttgttacttataactcgctcatggattatctttgcaagaacggaagatgcaccgaagctagaaagatgttcgattctatgaccaagaGgggcctagagcctgatattgctacctatggtaccctgcttcaggggtatgctaccaaaggagcccttgttgagatgcatggtctcttggatttgatggtacgaaacggtatccaccctaatcattatgttttcagcattctaatatgtgcatacgctaaacaaGggaaagtagatcaggcaatgcttgtgttcagcaaaatgaggcagcaaggattgaatccgaatgcagtgacgtatggagcagTtataggcatactttgcaagtcaggcagtgtagacgatgctatgcTTtattttgagcagatgatcgatgaaggactaagccctaacattattgtgtatacctccctaattcatggtctgtgcacctgtgacaaatgggacaaggctgaagagttaattcttgaaatgttggatcgaggcatctgtctgaacactattttctttaattcaataattgacagtcattgcaaagaagggagggttatagaatctgaaaaactctttgacctgatggtacgtattggtgtgaagcccaatgtcattacgtacagtactcttatcgatggatgctgcttagctggtaagatggatgaagcaacgaagttacttgccagcatggtctcagttggggtgaaAcctaatactgttacttatagaactttgattaatggctactgcaaaattagtaggatggatgacgcattagctcttttcaaagagatggtgagcagtggtgttagtcctaatattattacgtataacataattctgcaaggttTAtttcaaaccagaagaactgctgctgcaaaagaactctatgtcgggattaccaaaagtggaacgcagattgaacttagcacatacaacataatccttcatggactttgcaaaaacaaactcactgatgatgcacttcggatgtttcagaacctatgtttgatggatttgaagcttgaggctaggactttcaacatTAtgattgatgcattgcttaaagttggcagaaatgatgaagccaaggatttgtttgttgctttctcgtctaacggtttagtgccgaattattggacgtacagattgatggctgaaaataTtataggacaggggttgctagaagaattggatcaactctttctttcaatggaggacaatggctgtactgttgactctggcatgctAaatttcattgttagggaactgttgcagagaggtgagataaccagggctggcacttacctttccatgattgatgagaagcacttttccctcgaagcatccactgcttccttgtttatagatcttttgtctgggggAaaatatcaagaatatcatagatttctccctgaaaaatacaagtcctttatagaatctttgagctgctga
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| Protein seq | MADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPDCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLEPDIATYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLSPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGCCLAGKMDEATKLLASMVSVGVKPNTVTYRTLINGYCKISRMDDALALFKEMVSSGVSPNIITYNIILQGLFQTRRTAAAKELYVGITKSGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFIDLLSGGKYQEYHRFLPEKYKSFIESLSC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.135837 | 0.753253 | 1.725822 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495400 | SBH | 0.828533 | 0.622825 | 0.833279 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35436 | SBH | 0.338377 | 0.442807 | 0.161691 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016310 | RBH | 0.0 | 0.0 | 0.263669 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015700 | RBH | 2.333456 | 1.732336 | 9.671180 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015870 | SBH | 0.063017 | 0.018916 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016040 | SBH | 2.907954 | 13.057494 | 14.280411 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | SBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015740 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336700 | SBH | 14.8875525 | 14.265312 | 27.1701235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015700 | RBH | 0.051787 | 0.129545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | SBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015610 | RBH | 0.118714 | 0.0 | 0.047110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016240 | RBH | 0.056753 | 0.650219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015840 | SBH | 0.387500 | 0.839234 | 1.622123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016020 | RBH | 0.771048 | 7.247159 | 6.238315 |
