Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0497366 | OGI:10048420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:18946448-18949595 | ||||||||
| Gene Symbol | PPR458, PPR7, PPR4, PPR794, PPR6, PPR6-794, PPR5, Rf5, Rf1a, PPR11 | ||||||||||
| DNA seq | AACTGCGCAAGAGATCGATCGCGATCACCCTGCTCGTCGCCGATCTCCTACACCATCCCTGCCATCTCCTTCCCCTCCACTGGCTGCTGCTGCACCTGTCAGCTAGGGCGGGCATGGCGCGCCGCGCCGCTTCCCGCGCTGCTGGCGCCCTTCGCTCGGAGGGCTCGATCCAAGGGCGAGGGGGCCGCGCGGGGGGCAGTGGCGGTGGCGCGGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGTCGTGGCATACCAGATGTCTTCTCCTACAATATTCTTCTCAACGGGCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGTTACTGCACATAATGGCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTCGTACAGCACCGTCATCAATGGCTTCTTCAAGGAGGGGGATCTGGACAAAATGCTTGACCAGAGGATTTCGCCAAATGTTGTGACCTACAACTCTATTATTGCTGCGCTATGCAAGGCTCAAACTGTGGACAAGGCCATGGAGGTACTTACCACCATGGTTAAGAGTGGTGTCATGCCTGATTGCATGACATATAATAGTATTGTGCATGGGTTTTGCTCTTCAGGGCAGCCGAAAGAGGCTATTGTATTTCTCAAAAAGATGCGCAGTGATGGTGTCGAACCAGATGTTGTTACTTATAACTCGCTCATGGATTATCTTTGCAAGAACGGAAGATGCACGGAAGCAAGAAAGATTTTTGATTCTATGACCAAGAGGGGCCTAAAGCCTGATATTACTACCTATGGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGGTCTCTTGGATTTGATGGTACGAAACGGTATCCACCCTAATCATTATGTTTTCAGCATTCTAGTATGTGCATACGCTAAACAAGAGAAAGTAGAAGAGGCAATGCTTGTATTCAGCAAAATGAGGCAGCAAGGATTGAATCCGAATGCAGTGACCTATGGAACAGTTATAGATGTACTTTGCAAGTCAGGTAGAGTAGAAGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAAGACCTGACAGCATTGTTTATAACTCCCTAATTCATAGTCTCTGTATCTTTGACAAATGGGAGAAGGCTGAAGAGTTATTTCTTGAAATGTTGGATCGAGGCATCTGTCTTAGCACTATTTTCTTTAATTCAATAATTGACAGTCATTGCAAAGAAGGGAGGGTTATAGAATCTGGAAAACTCTTTGACTTGATGGTACGAATTGGTGTGAAGCCCGATATCATTACCCTTGGCAGGTAAGATGGATGAAGCAATGAAGTTACTTTCTGGCATGGTCTCAGTTGGGTTGAAACCTAATACTGTTACTTATAGCACTTTGATTAATGGCTACTGCAAAATTAGTAGGATGGAAGACGCGTTAGTTCTTTTTAAGGAGATGGAGAGCAGTGGTGTTAGTCCTGATATTATTACGTATAACATAATTCTGCAAGGTTTATTTCAAACCAGAAGAACTGCTGCTGCAAAAGAACTCTATGTCAGGATTACCGAAAGTGGAATGCAGATTGAACTTTGTTAGATTTAATTGGATAATTAATCCATTTAAATCAATTAAATCAAATAAATTCCAAGGCTCATTATGCTAGGAATTCATGTGAATTCATTCTTCTATGGGATATCAATGGGATGAAGAGTTTTGAGAATTAATCCATTTGATTAAGGAATTGGTAACTTATATCAATTAATCCTAATTGATGGATGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCTATTCCTCTTCCTATTCCATTGGTAACTTACATCAATTACTCTTAATTGATTGTTGGTTGATGGTTGTGTAGTGGAGGATGGTTCATGGCTAGTTGATGACAATTAGTTGCTCCATTCCTCTTCCTATTCCATGACTCTTACTCTTCATCTTCCATTCCTCTTATAAAATGAGAATGGATTTGATCTCCCGCGAGAAGAAGAAGACACACTTTCATCCATTTTCAAAAGCTGTTGCTGCTACGGTAATCCCATCCCGACGAGTGTGTGCACACGCGTTGGGAGAGTAGGCCTCCGAAACCACGCGTTGCTGCGACGTTTGCACAGACGGGCGGGCGATCAGGTTTTTGGGGAGCGCAAGGCGCGACTACTCACTGTTCGTCAACATCTACTTCATCTTCACCAACATGTCGAACACTGGAGACAAGGAGAAGGAGACTCCCGTCAACACCAACGGAGGCAATACTGCCTCAAACTCCAGCGGAGGACCATTCTTGGGGTATAACCTTATTACATTATTTCAATTAGAAGTTTTACTGTTAATGTTCATCGCAATGTCAACATTGTGTCATTATGTGATTGTTGATGCTTATTCAACGTTAAGCATGCTCATGTTGATTACATTCACCACTATCACTGGATCAAATCCTATTGTAAATATCATGTTTATTATCTTGTTATTTTGGATTAAAATATGCCGAATTATGACCAAATTTCCAACAAACTTAGCACATACAACATAATCCTTCATGGACTTTGCAAAAACAAACTCACTGATGATGCACTTCGAATGTTTCAGAACCTATGTTTGATGGATTTGAAGCTTGAGGCTAGGACTTTCAACATTATGATTGATGCATTGCTTAAAGTTGGCAGAAATGATGAAGCCAAGGATTTGTTTGTTGCTTTCTCGTCTAACGGTTTAGTGCCGAATTATTGGACGTACAGATTGATGGCTGAAAATATTATAGGACAGGGGTTGCTAGAAGAATTGGATCAACTCTTTCTTTCAATGGAGGACAATGGCTGTACTGTTGACTCTGGCATGCTAAATTTCATTGTTAGGGAACTGTTGCAGAGAGGTGAGATAACCAGGGCTGGCACTTACCTTTCCATGATTGATGAGAAGCACTTTTCCCTCGAAGCATCCACTGCTTCCTTGTTTATAGATCTTTTGTCTGGGGGAAAATATCAAGAATATCATATATTTCTCCCTGAAAAATACAAGTCCTTTATAGAATCTTTGAGCTGCTGAAGCATTTTGCAGCTTTGAAATTCTGTGTTGGAATTCTTTTCTCCTACAGTCCGATTAGAG
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| CDS seq | ATGGCGCGCCGCGCCGCTTCCCGCGCTGCTGGCGCCCTTCGCTCGGAGGGCTCGATCCAAGGGCGAGGGGGCCGCGCGGGGGGCAGTGGCGGTGGCGCGGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGTCGTGGCATACCAGATGTCTTCTCCTACAATATTCTTCTCAACGGGCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGTTACTGCACATAATGGCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTCGTACAGCACCGTCATCAATGGCTTCTTCAAGGAGGGGGATCTGGACAAAATGCTTGACCAGAGGATTTCGCCAAATGTTGTGACCTACAACTCTATTATTGCTGCGCTATGCAAGGCTCAAACTGTGGACAAGGCCATGGAGGTACTTACCACCATGGTTAAGAGTGGTGTCATGCCTGATTGCATGACATATAATAGTATTGTGCATGGGTTTTGCTCTTCAGGGCAGCCGAAAGAGGCTATTGTATTTCTCAAAAAGATGCGCAGTGATGGTGTCGAACCAGATGTTGTTACTTATAACTCGCTCATGGATTATCTTTGCAAGAACGGAAGATGCACGGAAGCAAGAAAGATTTTTGATTCTATGACCAAGAGGGGCCTAAAGCCTGATATTACTACCTATGGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGGTCTCTTGGATTTGATGGTACGAAACGGTATCCACCCTAATCATTATGTTTTCAGCATTCTAGTATGTGCATACGCTAAACAAGAGAAAGTAGAAGAGGCAATGCTTGTATTCAGCAAAATGAGGCAGCAAGGATTGAATCCGAATGCAGTGACCTATGGAACAGTTATAGATGTACTTTGCAAGTCAGGTAGAGTAGAAGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAAGACCTGACAGCATTGTTTATAACTCCCTAATTCATAGTCTCTGTATCTTTGACAAATGGGAGAAGGCTGAAGAGTTATTTCTTGAAATGTTGGATCGAGGCATCTGTCTTAGCACTATTTTCTTTAATTCAATAATTGACAGTCATTGCAAAGAAGGGAGGGTTATAGAATCTGGAAAACTCTTTGACTTGATGGTACGAATTGGTGTGAAGCCCGATATCATTACCCTTGGCAGGTAA
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| Protein seq | MARRAASRAAGALRSEGSIQGRGGRAGGSGGGAEDARHVFDELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0497366 | OsNip_10t0497366-00 | Chr10 | 18946448 | 18949595 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGCGCCGCGCCGCTTCCCGCGCTGCTGGCGCCCTTCGCTCGGAGGGCTCGATCCAAGGGCGAGGGGGCCGCGCGGGGGGCAGTGGCGGTGGCGCGGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGTCGTGGCATACCAGATGTCTTCTCCTACAATATTCTTCTCAACGGGCTGTGTGATGAGAACAGAAGCCAAGAAGCTCTCGAGTTACTGCACATAATGGCTGATGATGGAGGTGACTGCCCACCTGATGTGGTGTCGTACAGCACCGTCATCAATGGCTTCTTCAAGGAGGGGGATCTGGACAAAATGCTTGACCAGAGGATTTCGCCAAATGTTGTGACCTACAACTCTATTATTGCTGCGCTATGCAAGGCTCAAACTGTGGACAAGGCCATGGAGGTACTTACCACCATGGTTAAGAGTGGTGTCATGCCTGATTGCATGACATATAATAGTATTGTGCATGGGTTTTGCTCTTCAGGGCAGCCGAAAGAGGCTATTGTATTTCTCAAAAAGATGCGCAGTGATGGTGTCGAACCAGATGTTGTTACTTATAACTCGCTCATGGATTATCTTTGCAAGAACGGAAGATGCACGGAAGCAAGAAAGATTTTTGATTCTATGACCAAGAGGGGCCTAAAGCCTGATATTACTACCTATGGTACCCTGCTTCAGGGGTATGCTACCAAAGGAGCCCTTGTTGAGATGCATGGTCTCTTGGATTTGATGGTACGAAACGGTATCCACCCTAATCATTATGTTTTCAGCATTCTAGTATGTGCATACGCTAAACAAGAGAAAGTAGAAGAGGCAATGCTTGTATTCAGCAAAATGAGGCAGCAAGGATTGAATCCGAATGCAGTGACCTATGGAACAGTTATAGATGTACTTTGCAAGTCAGGTAGAGTAGAAGATGCTATGCTTTATTTTGAGCAGATGATCGATGAAGGACTAAGACCTGACAGCATTGTTTATAACTCCCTAATTCATAGTCTCTGTATCTTTGACAAATGGGAGAAGGCTGAAGAGTTATTTCTTGAAATGTTGGATCGAGGCATCTGTCTTAGCACTATTTTCTTTAATTCAATAATTGACAGTCATTGCAAAGAAGGGAGGGTTATAGAATCTGGAAAACTCTTTGACTTGATGGTACGAATTGGTGTGAAGCCCGATATCATTACCCTTGGCAGGTAA
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| Protein seq | MARRAASRAAGALRSEGSIQGRGGRAGGSGGGAEDARHVFDELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0497300 | RBH | 0.203808 | 0.658216 | 0.377032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35436 | SBH | 0.338377 | 0.442807 | 0.161691 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497366 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015890 | RBH | 0.092648 | 0.0 | 0.752496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016130 | RBH | 0.163027 | 0.000000 | 0.213683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015520 | RBH | 0.610800 | 1.212539 | 1.200322 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016220 | RBH | 0.026612 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016040 | SBH | 2.907954 | 13.057494 | 14.280411 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | SBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015930 | SBH | 0.037830 | 0.006792 | 0.266487 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336900 | RBH | 0.168846 | 0.2688145 | 0.650718 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015700 | RBH | 0.051787 | 0.129545 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015580 | SBH | 0.058650 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | RBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015840 | SBH | 0.141397 | 0.0 | 0.060239 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016240 | RBH | 0.056753 | 0.650219 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015670 | SBH | 0.283203 | 1.667709 | 1.056783 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016020 | SBH | 0.771048 | 7.247159 | 6.238315 |
