Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0020450 | OGI:01044490 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:26650477-26654887 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagagggggagcgcgccgttggcgcgcggcctgcaatcaagtaggttagaaacagagtggacatatgtatagtaatcccagcaggtttgtatattaaagattgaagataaaggagagcatattgaaagaagcatatgagaaataaattaagggaaaggaagcaggcattgataaatagatcatatacaagtatattagcgggtagtagtaggtggcattgcatatttacaatagagttgagtgctgatcattagtgcttaaggtgcaaagctaattagcatagcataacggtggtagaggaggcttgcagttttgctgcactaaaatgaatgggataatttagtgctaacaaaaggacgatttcactatagcataggcgatatacatggcatttagcagacatctattgtcgtttggagttgaggtgccttgtggaagtgaaagatgtaaacggaccgaagatgtatgccattgttcgctgcaaaagttgcccatccttttttttaagttgcaacgaccatgtgttgaaacatgtagagtcagggtgactgaaattctgtctgctgcttcaacttgaatgtccatggtttttcgacctcccatgagtggctgaatgtaggtctttgatattccttagcaaagtactgtaatttgaatttcatgttatttctttgtcaaaggcatgaagagagcaatggttgtctagtgtaagtgagcttactattttatcttgcttcatgaatgtattgttcatagtcacaatgtagaacttgtttgaaggaggaactgtccaataatgtcggtgtagttcttgatgtcaggtgtcacttttgtatccttcagcaaaagcagacattgttgaatttgcgtgtgctattgccggcctgtgagcaaacattttttataagttttgtaagtgcaattgaaaaacattgacactggatattctccgtccatcacttctcccgaccttgtcaaaagaataaacaatcaacatagggcgccactgaattttgtcagtaacaatagaagtagccatgttcgtttaattattctgaactaaaaacttatacacaacattttgtaaaatcgcaagacaaagtaaaaacatagattgaactaagaacatacgaagcataaatttctaagaggctgtttggttgttgccctcacctgagtgctctcaagcaggtcgatccagccgaaggcgaacgacgtcgaacgctgagatcgatgcctgagtcaggcgtgattctcagggcagtaaccaaacacactctaaatccagactgcgcgtgactgattagagagttaagctggatagtattaaccacctaatgtcaatgctttccttgaaaattcaaatcaggaagccctgaatcacagggattaaatatatttatgaaacacaggggcaatggcaaacaaatgagattgcatatcagggaaaggtcagtgatgaaggtgggaggctgggagaggagcaacactgtaaaaccgtcttcatttgtaggaagcaatcagaaggtcagttcagccacctcgttctaaagctatacaataaaatggaatcaacaaatggcatatactttatcaatatattttttttctgtaatcatttattgaaatgaaataaaaagcaaccaccagggaccttacaaattaaaacaaaggagtggccaatcataactgtattcactatcactttattaagaagggatataaggtataaaaccaatctcgggaagaagttatgtaccaggagcagtccattcccactgcaaattcattggacttaccacaaactaccgcacacatccacccaggtgatggcaataaaaattgaggctctcaaatgtagtactgttagtttgagcaatctgaaaccaagaatgaggcacatgaattatatcgtaaatggtgtaatctatgatatagatctgaccaaaaagaaaatacaagatatatggtagaaaagaaaaaaaacaattaaattaagtattcaagtttggaacagagaaattcaagtaaaggaaaagttctccatttctagaatttggagcaaaatcacaggagagatggccacaatgtcaaaaacactcatcagcatgttcatattataaaaagtacatatagctcgagtatttgaaacgaaaaatatttcggctgctgttttctgttgctaatatataacatttcgtccagatagcacaaactaacccctctaaatttacagcacatcatgcccatgcatctataatatatttcataaatattaaacctcacttcaatggagactgattttatgcaaacattaagtcgcatttgaattatgtacaaaatacccagtggtacgttcagatccagtagaactgtgcaagaaaggatgaaaaatgcatctaaacttgtcgttatggggaaaaaaggcatgggttttgaagccagctattcctaagggaaaattaatgtcagttctcataagcatatactgttaataaaggcatgatcttctatttcaagcatggaggtacatagttatcataagtgctcattggaaaaggattgttttataaaaagaccaaggttatactttatttattagatcaaagaaggtaaaaagtaagatattgcgagcatatgacattagctaccgcatcaatggagttataaagaagtaaagcaattggcatataaccaatgtaatggatgagcagagcatcacagtgaggcaacatgatttgtacattgaggaaaaaagcatttaccggcagtaatcagagcacatatcggaaatgtacaggaaaaaacatcgtgatgtacctgattaacattttgaaagcaaaaataaggaatgttatgcataatactttcaccaccacagcagcattgcctgtccagcagtcctctcaggacatccatattatgatgatgcacttgtttgatgaagcaaaagccacactactacatgtcaaagccagctcagatttacctacttctcccaatcaggtcattgctaattgcaacaaagagagaaaatagagagaaaatggcatcagctagaattacatacactgaaacatccgatacaacaccactaagacccatgtgtaaagataaagtgagaatgggtgtattgcactgcttactcatttgttctgcaagcaatcaattttgtcaatcttccagattggctagacttcgctgcagaggcagtaagctgtagaagcatcatcagatttgtgccaaaaagaacgcttattgttgtgtgtgtgcggagaagcaacggttactgaatttatgtaaatattaagttgcagttgagttccgcacaaaataattaaacccagtgttcatttagctctactggaactgcgcaagaacggatgaaatgcatcttaatttgttgttattggagaaaagcatatatgttttggggccagctatatacctaagggaaaaaaaaaggtgagtaaatcagaaatagaaaggtttacttaaaaggttacaactctttgtccatgcgatctctaccatgaatgcaaggcaggaaaaacgaaagctgctatttaaattctagagcagatattaatcaccatctacaggaaggattttgtaaagtacaaacttgctatctgtatatagcattacacaatagccttaagcaacagctattacttacaaaatagggggagaagtctactaatacattattaagcaaaaaattaatgatgaagtccacctcccttgttatgaccgaagagagtgaaacagctgtgacaaagcaagaaatacatctcaatcattcaatcaactttgtgctaaatagggtcatttctggtgtacttgaataaccaataacctgtcaaaagtgcattctttcatttcctatttctatccatcaccattcttcaaaaattagagaaacaaacattaaagaagaaggcactcaactgaccaagtagctcaaggcaacaacagggggctgcgggtgaagataatctttcggagcagctggacttctatacagcggtgtgtccctgttgaccatgagccctaggccgcctaatcgcaggcgtccgccgatccagaaacgaagaggatggagagggagagaggggcggtgccgggcgtagagggcagctgccggcttcccctcccctcacaacggccggatctgccggcgaggaggccggagtcaccggatccggcggtcccggcctccttgttggcggatgcggcggcaggagcgagaggatggcgacggcagcggcccgcgtgtcgggcggtggcgggcacggcagcagagagcgcgcgggggaggtcgtcacctgtgggaagaagaggatgaggggagcggcacgcggcgacggccgtcgcttgggcagggagagagcggagcgagaggaggag
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| CDS seq | atggtcaacagggacacaccgctgtatagaagtccagctgctccgaaagattatcttcacccgcagccccctgttgttgccttgagctacttggatacaaaagtgacacctgacatcaagaactacaccgacattattggacagttcctccttcaaacaagaatatcaaagacctacattcagccactcatgggaggtcgaaaaaccatggacattcaagttgaagcagcagacagaatttcagtcaccctgactctacatgtttcaacacatggtcgttgcaacttaaaaaaaaggatgggcaacttttgcagcgaacaatggcatacatcttcggtccgtttacatctttcacttccacaaggcacctcaactccaaacgacaatagatgtctgctaaatgccatgtatatcgcctatgctatagtgaaatcgccgcgcgccaacggcgcgctccccctctag
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| Protein seq | MVNRDTPLYRSPAAPKDYLHPQPPVVALSYLDTKVTPDIKNYTDIIGQFLLQTRISKTYIQPLMGGRKTMDIQVEAADRISVTLTLHVSTHGRCNLKKRMGNFCSEQWHTSSVRLHLSLPQGTSTPNDNRCLLNAMYIAYAIVKSPRANGALPL |
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| Function | Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0020450 | OsPr106_11g0020450.02 | Chr11 | 26650639 | 26654658 | - | NAM | ||
| CDS seq | atggtcaacagggacacaccgctgtatagaagtccagctgctccgaaagattatcttcacccgcagccccctgttgttgccttgagctacttgtactttgctaaggaatatcaaagacctacattcagccactcatgggaggtcgaaaaaccatggacattcaagttgaagcagcagacagaatttcagtcaccctga |
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| Protein seq | MVNRDTPLYRSPAAPKDYLHPQPPVVALSYLYFAKEYQRPTFSHSWEVEKPWTFKLKQQTEFQSP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0020450 | OsPr106_11g0020450.01 | Chr11 | 26650477 | 26654658 | - | NAM | ||
| CDS seq | atggtcaacagggacacaccgctgtatagaagtccagctgctccgaaagattatcttcacccgcagccccctgttgttgccttgagctacttggatacaaaagtgacacctgacatcaagaactacaccgacattattggacagttcctccttcaaacaagaatatcaaagacctacattcagccactcatgggaggtcgaaaaaccatggacattcaagttgaagcagcagacagaatttcagtcaccctgactctacatgtttcaacacatggtcgttgcaacttaaaaaaaaggatgggcaacttttgcagcgaacaatggcatacatcttcggtccgtttacatctttcacttccacaaggcacctcaactccaaacgacaatagatgtctgctaaatgccatgtatatcgcctatgctatagtgaaatcgccgcgcgccaacggcgcgctccccctctag
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| Protein seq | MVNRDTPLYRSPAAPKDYLHPQPPVVALSYLDTKVTPDIKNYTDIIGQFLLQTRISKTYIQPLMGGRKTMDIQVEAADRISVTLTLHVSTHGRCNLKKRMGNFCSEQWHTSSVRLHLSLPQGTSTPNDNRCLLNAMYIAYAIVKSPRANGALPL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0020450 | OsPr106_11g0020450.03 | Chr11 | 26650628 | 26654887 | - | IsoSeq | ||
| CDS seq | atgccttttttccccataacgacaagtttagatgcatttttcatcctttcttgcacagttctactggatctgaacgtaccactgggtattttgtacataattcaaatgcgacttaatgtttgcataaaatcagtctccattgaagtgaggtttaatatttatgaaatatattatagatgcatgggcatgatgtgctgtaaatttagaggggttagtttgtgctatctggacgaaatgttatatattagcaacagaaaacagcagccgaaatatttttcgtttcaaatactcgagctatatgtactttttata
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| Protein seq | MPFFPITTSLDAFFILSCTVLLDLNVPLGILYIIQMRLNVCIKSVSIEVRFNIYEIYYRCMGMMCCKFRGVSLCYLDEMLYISNRKQQPKYFSFQILELYVLFI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 16.869125 | 26.684681 | 59.053978 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0242900 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0242900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008760 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020600 | RBH | 1.798389 | 10.012899 | 8.004105 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018920 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018630 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015980 | RBH | 11.833102 | 23.168686 | 48.910770 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0243400 | SBH | 0.6169775 | 8.6632395 | 5.746596 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020940 | RBH | 0.969617 | 0.560121 | 3.537962 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0380800 | RBH | 1.5840765 | 22.384185 | 4.6952955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019400 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018900 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020190 | RBH | 3.354925 | 0.0 | 3.497534 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020300 | RBH | 0.850919 | 8.116541 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018900 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019170 | SBH | 0.0 | 0.0 | 0.0 |
