Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0242900 | OGI:01044490 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:7678686-7679890 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAAGGACATCTATTGTTATCTTGACGTTGGGTGGCTTGTAGAAGTGAAAGATGCAAACTGAATGGAGATGAATGGCATTGGTTGCTGCAAAAGTTGCCCATCCTCTCTTTAGGTTGCAACGATCGTCCGATGATTTATGCAGGAGCATGGTGACTGAATCACTGCCTGCTGCTTCAACCTGAACGAAGATAGTTTTTTTGCGTCCCATGAGTGGCTGAATGTAGGTCACTGAATATTCCTTGGTAAAGTACTGCAATTGGAACTGCATGTTATTTTTTTAGGGAATGCATGAATAGACCAATGTTTGTCTAGTGTAAGTATACTTACCAGTCTATCTTGCTTCATGAATGTATTGTTCATAGTCACAATATAGAACTTGCTGGAACGCTGGAGGAACTGCCCGATGATGCTGATGTAGTTTTTAATGTCAGGTGTGACTGCTGTATTCCTTGCACAAAAACAGAGATCGTCGAAGCTACGTGTGGTTTCGCCTGTGAGCACACATTGTTTATAAGATTGCTATGTTTAATTGGAAAGAAGTCATGAAATAGGTAAATATGGCTATAAATTCTGTTAGTAGACAATTAATTATATCATGATTGTTGATATGCTAATAGTGACTCGGATTTGTTCTCTGTACTGGTAGGCTTGTGTGATAAAATCTCTGTGGCCAGAATGCGGATACTGATGCGGTGATTTTAGAAGGAAAAGAACTGAGTTATATGTGAACAGATGAAAGGCTTACCTGAATTGTCGGAGCTGGAAGGAATGTCAGTCATCGACTCTGTCCTTGAATCTGACGAAGTCTCTGAAAGATGGTGTTGAAATATGTCATTAGTGTGATTGGCTATAGATTTGTACATATAGGTATATATCATGGAGCACAGGATTGTAGACAAATATTTGTGCACCTTTGTTTGATGTGTGTGAAATGAGCATGGAAGCATGCTTGCTGGTAGGCATGTCATTGATAGTGATTCCTGTCGATCTCTTTGGTGCTGTCTTGATTTGTTTCTTGGATGAAGGGATCATGGGCAGCTTGCTATCTTTTTTCTTGTCAAAGAGAAGGACATTTATCTTTGATGGAGTAAGAACTTGAAAGCGAATGTATTGACCAGACAGTAAGCCAGTACGGTGTACAAAGGTTTTCCACCCTTTTGAGATGAAGAATGATCCTGCAATTTTTTCTAGTTCGACGGTCAT
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| CDS seq | ATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTACACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGCGAAACCACACGTAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGCCACCCAACGTCAAGATAACAATAGATGTCCTTTAA
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| Protein seq | MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTRSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKPPNVKITIDVL |
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| Function | Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0242900 | OsNip_11t0242900-00 | Chr11 | 7678686 | 7679890 | - | RAP2018-11-26 | ||
| CDS seq | ATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTACACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGCGAAACCACACGTAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGCCACCCAACGTCAAGATAACAATAGATGTCCTTTAA
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| Protein seq | MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTRSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKPPNVKITIDVL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0625400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13900 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0242900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008650 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018920 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018890 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011620 | RBH | 1.075955 | 0.206617 | 2.476452 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0582500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011750 | SBH | 0.427724 | 0.467581 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018900 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008670 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008710 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008590 | RBH | 0.0 | 0.0 | 0.0 |
