Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g13900 | OGI:01044490 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:7678686-7679890 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAAGGACATCTATTGTTATCTTGACGTTGGGTGGCTTGTAGAAGTGAAAGATGCAAACTGAATGGAGATGAATGGCATTGGTTGCTGCAAAAGTTGCCCATCCTCTCTTTAGGTTGCAACGATCGTCCGATGATTTATGCAGGAGCATGGTGACTGAATCACTGCCTGCTGCTTCAACCTGAACGAAGATAGTTTTTTTGCGTCCCATGAGTGGCTGAATGTAGGTCACTGAATATTCCTTGGTAAAGTACTGCAATTGGAACTGCATGTTATTTTTTTAGGGAATGCATGAATAGACCAATGTTTGTCTAGTGTAAGTATACTTACCAGTCTATCTTGCTTCATGAATGTATTGTTCATAGTCACAATATAGAACTTGCTGGAACGCTGGAGGAACTGCCCGATGATGCTGATGTAGTTTTTAATGTCAGGTGTGACTGCTGTATTCCTTGCACAAAAACAGAGATCGTCGAAGCTACGTGTGGTTTCGCCTGTGAGCACACATTGTTTATAAGATTGCTATGTTTAATTGGAAAGAAGTCATGAAATAGGTAAATATGGCTATAAATTCTGTTAGTAGACAATTAATTATATCATGATTGTTGATATGCTAATAGTGACTCGGATTTGTTCTCTGTACTGGTAGGCTTGTGTGATAAAATCTCTGTGGCCAGAATGCGGATACTGATGCGGTGATTTTAGAAGGAAAAGAACTGAGTTATATGTGAACAGATGAAAGGCTTACCTGAATTGTCGGAGCTGGAAGGAATGTCAGTCATCGACTCTGTCCTTGAATCTGACGAAGTCTCTGAAAGATGGTGTTGAAATATGTCATTAGTGTGATTGGCTATAGATTTGTACATATAGGTATATATCATGGAGCACAGGATTGTAGACAAATATTTGTGCACCTTTGTTTGATGTGTGTGAAATGAGCATGGAAGCATGCTTGCTGGTAGGCATGTCATTGATAGTGATTCCTGTCGATCTCTTTGGTGCTGTCTTGATTTGTTTCTTGGATGAAGGGATCATGGGCAGCTTGCTATCTTTTTTCTTGTCAAAGAGAAGGACATTTATCTTTGATGGAGTAAGAACTTGAAAGCGAATGTATTGACCAGACAGTAAGCCAGTACGGTGTACAAAGGTTTTCCACCCTTTTGAGATGAAGAATGATCCTGCAATTTTTTCTAGTTCGACGGTCAT
More
|
||||||||||
| CDS seq | ATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTACACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGCGAAACCACACGTAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGCCACCCAACGTCAAGATAACAATAGATGTCCTTTAA
More
|
||||||||||
| Protein seq | MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTRSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKPPNVKITIDVL |
||||||||||
| Function | Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g13900 | LOC_Os11g13900.1 | Chr11 | 7678686 | 7679890 | - | MSU_osa1r7 | ||
| CDS seq | ATGACCGTCGAACTAGAAAAAATTGCAGGATCATTCTTCATCTCAAAAGGGTGGAAAACCTTTGTACACCGTACTGGCTTACTGTCTGGTCAATACATTCGCTTTCAAGTTCTTACTCCATCAAAGATAAATGTCCTTCTCTTTGACAAGAAAAAAGATAGCAAGCTGCCCATGATCCCTTCATCCAAGAAACAAATCAAGACAGCACCAAAGAGATCGACAGGAATCACTATCAATGACATGCCTACCAGCAAGCATGCTTCCATGCTCATTTCACACACATCAAACAAAGAGACTTCGTCAGATTCAAGGACAGAGTCGATGACTGACATTCCTTCCAGCTCCGACAATTCAGGCGAAACCACACGTAGCTTCGACGATCTCTGTTTTTGTGCAAGGAATACAGCAGTCACACCTGACATTAAAAACTACATCAGCATCATCGGGCAGTTCCTCCAGCGTTCCAGCAAGTTCTATATTGTGACTATGAACAATACATTCATGAAGCAAGATAGACTGGTTGAAGCAGCAGGCAGTGATTCAGTCACCATGCTCCTGCATAAATCATCGGACGATCGTTGCAACCTAAAGAGAGGATGGGCAACTTTTGCAGCAACCAATGCCATTCATCTCCATTCAGTTTGCATCTTTCACTTCTACAAGCCACCCAACGTCAAGATAACAATAGATGTCCTTTAA
More
|
|||||||
| Protein seq | MTVELEKIAGSFFISKGWKTFVHRTGLLSGQYIRFQVLTPSKINVLLFDKKKDSKLPMIPSSKKQIKTAPKRSTGITINDMPTSKHASMLISHTSNKETSSDSRTESMTDIPSSSDNSGETTRSFDDLCFCARNTAVTPDIKNYISIIGQFLQRSSKFYIVTMNNTFMKQDRLVEAAGSDSVTMLLHKSSDDRCNLKRGWATFAATNAIHLHSVCIFHFYKPPNVKITIDVL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0242900 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g40900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0242900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008650 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030710 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0582500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008670 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008710 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008590 | RBH | 0.0 | 0.0 | 0.0 |
