Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0020600 | OGI:01044490 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:25361723-25362394 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gataaatagatcatatacaagtatattagcgggtagtagtaggtggcattgcatatttacaatagagttgagtgctgatcattagtgcttaaggtgcaaagctaattagcatagcataacggtggtagaggaggcttgcagttttgctgcactaaaatgaatgggataatttagtgctaacaaaaggacgatttcactatagcataggcgatatacatggcatttagcagacatctattgtcgtttggagttgaggtgccttgtggaagtgaaagatgtaaacggaccgaagatgtatgccattgttcgctgcaaaagttgcccatccttttttttaagttgcaacgaccatgtgttgaaacatgtagagtcagggtgactgaaattctgtctgctgcttcaacttgaatgtccatggtttttcgacctcccatgagtggctgaatgtaggtctttgatattccttagcaaagtactgtaatttgaatttcatgttatttctttgtcaaaggcatgaagagagcaatggttgtctagtgtaagtgagcttactattttatcttgcttcatgaatgtattgttcatagtcacaatgtagaacttgtttgaaggaggaactgtccaataatgtcggtgtagttcttgatgtcaggtgtcacttttgtatccttc
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| CDS seq | atgggaggtcgaaaaaccatggacattcaagttgaagcagcagacagaatttcagtcaccctgactctacatgtttcaacacatggtcgttgcaacttaaaaaaaaggatgggcaacttttgcagcgaacaatggcatacatcttcggtccgtttacatctttcacttccacaaggcacctcaactccaaacgacaatagatgtctgctaaatgccatgtatatcgcctatgctatagtgaaatcgtccttttgttag |
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| Protein seq | MGGRKTMDIQVEAADRISVTLTLHVSTHGRCNLKKRMGNFCSEQWHTSSVRLHLSLPQGTSTPNDNRCLLNAMYIAYAIVKSSFC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0020600 | OsKeNa_11g0020600.01 | Chr11 | 25361899 | 25362394 | - | NAM | ||
| CDS seq | atgggaggtcgaaaaaccatggacattcaagttgaagcagcagacagaatttcagtcaccctgactctacatgtttcaacacatggtcgttgcaacttaaaaaaaaggatgggcaacttttgcagcgaacaatggcatacatcttcggtccgtttacatctttcacttccacaaggcacctcaactccaaacgacaatagatgtctgctaaatgccatgtatatcgcctatgctatagtgaaatcgtccttttgttag
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| Protein seq | MGGRKTMDIQVEAADRISVTLTLHVSTHGRCNLKKRMGNFCSEQWHTSSVRLHLSLPQGTSTPNDNRCLLNAMYIAYAIVKSSFC |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0020600 | OsKeNa_11g0020600.02 | Chr11 | 25361723 | 25362317 | - | IsoSeq | ||
| CDS seq | attgtgactatgaacaatacattcatgaagcaagataaaatatactttgctaaggaatatcaaagacctacattcagccactcatgggaggtcgaaaaaccatggacattcaagttgaagcagcagacagaatttcagtca |
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| Protein seq | IVTMNNTFMKQDKIYFAKEYQRPTFSHSWEVEKPWTFKLKQQTEFQS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.798389 | 10.012899 | 8.004105 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018920 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018630 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020450 | RBH | 16.869125 | 26.684681 | 59.053978 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0243400 | RBH | 0.6169775 | 8.6632395 | 5.746596 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020940 | RBH | 0.969617 | 0.560121 | 3.537962 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0094700 | RBH | 2.1451085 | 34.455635 | 6.750704 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019400 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0019010 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020190 | RBH | 3.354925 | 0.0 | 3.497534 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018730 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018900 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019170 | SBH | 0.0 | 0.0 | 0.0 |
