Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0020300 | OGI:01044490 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:26119730-26124009 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agggaaaggaagcaggcattgataaatagatcatatacaagtatattagcgggtagtagtaggtggcattgcatatttacaatagagttgagtgctgatcattagtgcttaaggtgcaaagctaattagcatagcataacggtggtagaggaggcttgcagttttgctgcactaaaatgaatgggataatttagtgctaacaaaaggacgatttcactatagcataggcgatatacatggcatttagcagacatctattgtcgtttggagttgaggtgccttgtggaagtgaaagatgtaaacggaccgaagatgtatgccattgttcgctgcaaaagttgcccatccTtttttttaagttgcaacgaccatgtgttgaaacatgtagagtcagggtgactgaaattctgtctgctgcttcaacttgaatgtccatggtttttcgacctcccatgagtggctgaatgtaggtctttgatattccttagcaaagtactgtaatttgaatttcatgttatttctttgtcaaaggcatgaagagagcaatggttgtctagtgtaagtgagcttactattttatcttgcttcatgaatgtattgttcatagtcacaatgtagaacttgtttgaaggaggaactgtccaataatgtcggtgtagttcttgatgtcaggtgtcacttttgtatccttcagcaaaagcagacattgttgaaTttgcgtgtgctattgccggCctgtgagcaaacattttttaTaagttttgtaagtgcaattgaaaaacattgacactggatattctccgtccatcacttctcccgaccttgtcaaaagaataaacaatcaacatagggcgccactgaattttgtcagtaacaatagaagtagccatgttcgtttaattattctgaactaaaaacttatacacaacattttgtaaaatcgcaagacaaagtaaaaacatagattgaactaagaacatacgaagcataaatttctaagaggctgtttggttgttgccctcacctgagtgctctcaagcaggtcgatccagccgaaggcgaacgacgtcgaacgctgagatcgatgcctgagtcaggcgtgattctcagggcagtaaccaaacacactctaaatccagactgcgcgtgactgattagagagttaagctggatagtattaaccacctaatgtcaatgctttccttgaaaattcaaatcaggaagccctgaatcacagggattaaatatatttatgaaacacaggggcaatggcaaacaaatgagattgcatatcagggaaaggtcagtgatgaaggtgggaggctgggagaggagcaacactgtaaaaccgtcttcatttgtaggaagcaatcagaaggtcagttcagccacctcgttctaaagctatacaataaaatggaatcaacaaatggcatatactttatcaatataTtttttttctgtaatcatttattgaaatgaaataaaaagcaaccaccagggaccttacaaattaaaacaaaggagtggccaatcataactgtattcactatcactttattaagaagggatataaggtataaaaccaatctcgggaagaagttatgtaccaggagcagtccattcccactgcaaattcattggacttaccacaaactaccgcacacatccacccaggtgatggcaataaaaattgaggctctcaaatgtagtactgttagtttgagcaatctgaaaccaagaatgaggcacatgaattatatcgtaaatggtgtaatctatgatatagatctgaccaaaaagaaaatacaagatatatggtagaaaagaaaaaaaacaattaaattaagtattcaagtttggaacagagaaattcaagtaaaggaaaagttctccatttctagaatttggagcaaaatcacaggagagatggccacaatgtcaaaaacactcatcagcatgttcatattataaaaagtacatatagctcgagtatttgaaacgaaaaatatttcggctgctgttttctgttgctaatatataacatttcgtccagatagcacaaactaacccctctaaatttacagcacatcatgcccatgcatctataatatatttcataaatattaaacctcacttcaatggagactgattttatgcaaacattaagtcgcatttgaattatgtacaaaatacccagtggtacgttcagatccagtagaactgtgcaagaaaggatgaaaaatgcatctaaacttgtcgttatggggaaaaaaggcatgggttttgaagccagctattcctaagggaaaattaatgtcagttctcataagcatatactgttaataaaggcatgatcttctatttcaagcatggaggtacatagttatcataagtgctcattggaaaaggattgttttataaaaagaccaaggttatactttatttattagatCaaagaaggTAAAAAGTAAGAtattgcgagcatatgacattagctaccgcatcaatggagttataaagaagtaaagcaattggcatataaccaatgtaatggatgagcagagcatcacagtgaggcaacatgatttgtacattgaggaaaaaagcatttaccggcagtaatcagagcacatatcggaaatgtacaggaaaaaacatcgtgatgtacctgattaacattttgaaagcaaaaataaggaatgttatgcataatactttcaccaccacagcagcattgcctgtccagcagtcctctcaggacatccatattatgatgatgcacttgtttgatgaagcaaaagccacactactacatgtcaaagccagctcagatttacctacttctcccaatcaggtcattgctaattgcaacaaagagagaaaatagagagaaaatggcatcagctagaattacatacactgaaacatccgatacaacaccactaagacccatgtgtaaagataaagtgagaatgggtgtattgcactgcttactcatttgttctgcaagcaatcaattttgtcaatcttccagattggctagacttcgctgcagaggcagtaagctgtagaagcatcatcagatttgtgccaaaaagaacgcttattgttgtgtgtgtgcggagaagcaacggttactgaatttatgtaaatattaagttgcagttgagttccgcacaaaataattaaacccagtgttcatttagctctactggaactgcgcaagaacggatgaaatgcatcttaatttgttgttattggagaaaagcatatatgttttggggccagctatatacctaagggaaaaaaaaaaggtgagtaaatcagaaatagaaaggtttacttaaaaggttacaactctttgtccatgcgatctctaccatgaatgcaaggcaggaaaaacgaaagctgctatttaaattctagagcagatattaatcaccatctacaggaaggattttgtaaagtacaaacttgctatctgtatatagcattacacaatagccttaagcaacagctattacttacaaaatagggggagaagtctactaatacattattaagcaaaaaattaatgatgaagtccacctcccttgttatgaccgaagagagtgaaacagctgtgacaaagcaagaaatacatctcaatcattcaatcaactttgtgctaaatagggtcatttctggtgtacttgaataaccaataacctgtcaaaagtgcattctttcatttcctatttctatccatcaccattcttcaaaaattagagaaacaaacattaaagaagaaggcactcaactgaccaagtagctcaaggcaacaacagggggctgcgggtgaagataatctttcggagcagctggacttctatacagcggtgtgtccctgttgaccatgagccctaggccgcctaatcgcaggcgtccgccgatccagaaacgaagaggatggagagggagagaggggcggtgccgggcgtagagggcagctgccggcttcccctcccctcacaacggccggatctgccggcgaggaggccggagtcaccggatccggcggtcccggcctccttgttggcggatgcggcggcaggagcgagaggatggcgacggcagcggcccgcgtgtcgggcggtggcgggcacggcagcagagagcgcgcgggggaggtcgtcacctgtgggaagaagaggatgaggggagcggcacgcggcgacggccgtcgcttgggcagggagagagcggagcgagaggaggagaggaggcggaggaacggt
More
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| CDS seq | atggtcaacagggacacaccgctgtatagaagtccagctgctccgaaagattatcttcacccgcagccccctgttgttgccttgagctacttgtactttgctaaggaatatcaaagacctacattcagccactcatgggaggtcgaaaaaccatggacattcaagttgaagcagcagacagaatttcagtcaccctga |
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| Protein seq | MVNRDTPLYRSPAAPKDYLHPQPPVVALSYLYFAKEYQRPTFSHSWEVEKPWTFKLKQQTEFQSP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0020300 | OsLaMu_11g0020300.01 | Chr11 | 26119750 | 26123629 | - | NAM | ||
| CDS seq | atggtcaacagggacacaccgctgtatagaagtccagctgctccgaaagattatcttcacccgcagccccctgttgttgccttgagctacttgtactttgctaaggaatatcaaagacctacattcagccactcatgggaggtcgaaaaaccatggacattcaagttgaagcagcagacagaatttcagtcaccctga |
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| Protein seq | MVNRDTPLYRSPAAPKDYLHPQPPVVALSYLYFAKEYQRPTFSHSWEVEKPWTFKLKQQTEFQSP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0020300 | OsLaMu_11g0020300.02 | Chr11 | 26119730 | 26124009 | - | IsoSeq | ||
| CDS seq | atggatgtcctgagaggactgctggacaggcaatgctgctgtggtggtgaaagtattatgcataacattccttatttttgctttcaaaatgttaatcagattgctcaaactaacagtactacatttgagagcctcaatttttattgccatcacctgggtggatgtgtg |
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| Protein seq | MDVLRGLLDRQCCCGGESIMHNIPYFCFQNVNQIAQTNSTTFESLNFYCHHLGGCV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.850919 | 8.116541 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0020450 | RBH | 16.869125 | 26.684681 | 59.053978 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020940 | RBH | 0.969617 | 0.560121 | 3.537962 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0380800 | RBH | 1.5840765 | 22.384185 | 4.6952955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
