Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0007020 | OGI:11010520 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:5885350-5888528 | ||||||||
| Gene Symbol | RLCK312, OsRLCK312, - | ||||||||||
| DNA seq | ctagtattccctgagatatgcatctttgattctgtgcaacttggcagccacctcttgcatgctgatgcgttctcccggtgttggcttggtgcaacagagtccaatgtttaccatagagcgtagacaatgtaggcctttctcctcaactgctattggagtttcctggcaggggtccaactcttccttctctgtagaacaggggatcaattcttgatgcagcttgggatcaacaatttcaagtatcttgtcagggaagttgatagctgtatactttgcaatgctcaatccatccataaacatatcgtctgtcggccttctccgaataaatatttccaagagaacaactccaaagctgtatacatctgaggcagttgaaacttgaccaccatccgaacattctaaaatttcatatgacaagagttgagttcacaaattgacatatgtcagacaataaactaaatatgtagcaatgcaaaacaaggtaaaattaattaacagttacctggagcaatataaccaatggttccctttattacaagggaggaggttgagttcgaataacttagagatgatgttgtcgaatcaattttaaatcttgcaaggccaaagtctccaacatgagcaaccatgttatcatctagaaggatgttgctaggcttcaggtcacagtgaacaattgttccttggttgctatggtgcaggtactccagtgcatctgatacatccaccataatgtttattctctgagccaatgtaatgtgattttgatgtggagcatctccatcatctctgtttgagtatagtaatttatgtaagtccccacctgacataaacttatacactaaagctttgaagtcatttcctttagaatcaatactagagcatgcagttaggataggaactagattacggtgtctcacatttcttaaagcattacattctgaaataaagcttttttgtgcgccccttgtctctaggctgaataccttcacagcaaccacatcattgcactgaaatagttttccttgatatacacaactgaacctccctttgccaatcaaattggacatggaaaacctctcagttgctcttgcaagatcattgtaagaaactttgggaaaatctgtatgagatagtggcgaagatatagattgtcccttttgtttccccctcaagagtagtaagaccaatacagccaaagaaagtgataccaagatggccaatggtatcgcgattttgattgccaatgattgtccgtgtcttcttgaacttaaaggtgcaatgtagcatgcagctaggtgtaatgctagcaccccaccacataacccctgattgccatcaatttgaacggcagttgcattcttgaatattccttttgttgggacctcaccattaagatggttgaatgacaaatcaagttgcccaagatacttcaaattgctaagagaatctggtattggtcctgttaagttgttgtaagacagattaagcaaagtcaggctgaataacttgcctaacgatgtaggaatgcctcctgtgaaaatattatgatcgaacctgattatttgcaagctttcagagttgcccaaggtgttagggatctctccagatagattatttgatgaaagtatcagatacatcagatgctttgcattgccaacgtaaaagggaagaagtccctttagattgttgaaagataaattaatgtattgtattgttggaattctaaatatgtcctctggaatagtaccatcaaggttgttatttgaaattcccagtctttcaagggccgcaaggtttccaaaacttgccggtatctgtccactaaacttatttgagtataggaagaattggaccaagttagtaagattggaaagggtggatggaatgaaccctgtaaagttgttgtccctgacagatagtttttgcaagcttttgagagcccctagccaatctggaagaacacctgaaaaacgatttccagccaattctatcgcaaccagattgtgaaggttttctaggccagaaggaaaatgccctgatagctgattttctcccatgtgcacatattgcaattgaaaagaatggtttccaaatgaatttggcagacggccttctagacgattccaagctatcgagaacatttgcagctcagtgcaattggcaatgctgttcagaaactcctggtcttcactgttacgtccatggagttcattgaactcaagatttaaccaagacagtttagtaagtttgccgatcgagctagccaatcccccgttgaaattattgtatgataattcgagaaggtataagttagaagcatttgttattgatgatgggattttcccatgaaagaggttgccgcttaattcaaatgcttggagattaggcagggagttacccaggtctggtggcacctctccatgaagatcattaatagcgaagctaagtccagttagagcagaaatattcaggacggcttctggaaagctacctgttagcttattgatatccaaatacaagatctccagcgcagacaacttcgaaaactcatctgggatgttgccctcaatactagtgttaacacaagcaaagtattttagcgttgtgatgttggcaagagaagcaggtatggttcccgtgatattattgaatgaaagtctcagcttttctagccgatgaggtaaatctgcaggaaatttcccagctagattgtttctaaacagatctagcaccatgagatcagaataatttgcaaggtttggtatccttccttgtaaggtgttagcagccaaggagagggtttggagacggtgcaagtgggcaagggatgcagggatctgtccagtgaaagcatttcctgttaggattagatgcttgaggaatgttaggtttccaagtgaaggggatattgtccctactaggtctcgatttgtaaggttaagtgcaacaacatggtttggggccttcaccctacaaaagacaccttcccaactgcaaacttgagtgctgtcattccaggacactaatgcttgctgtggatccaaaatgattgcattcttgaaatcaagcagcgaaagtcgatctgtctcatttccatgtaacgattggcacacgatttggattacactgcatgccataaggaccaagagaaactgtccagttgcagcaatcttcat
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| CDS seq | atgaagattgctgcaactggacagtttctcttggtccttatggcatgcagtgtaatccaaatcgtgtgccaatcgttacatggaaatgagacagatcgactttcgctgcttgatttcaagaatgcaatcattttggatccacagcaagcattagtgtcctggaatgacagcactcaagtttgcagttgggaaggtgtcttttgtagggtgaaggccccaaaccatgttgttgcacttaaccttacaaatcgagacctagtagggacaatatccccttcacttggaaacctaacattcctcaagcatctaatcctaacaggaaatgctttcactggacagatccctgcatcccttgcccacttgcaccgtctccaaaccctctccttggctgctaacaccttacaaggaaggataccaaaccttgcaaattattctgatctcatggtgctagatctgtttagaaacaatctagctgggaaatttcctgcagatttacctcatcggctagaaaagctgagactttcattcaataatatcacgggaaccatacctgcttctcttgccaacatcacaacgctaaaatactttgcttgtgttaacactagtattgagggcaacatcccagatgagttttcgaagttgtctgcgctggagatcttgtatttggatatcaataagctaacaggtagctttccagaagccgtcctgaatatttctgctctaactggacttagcttcgctattaatgatcttcatggagaggtgccaccagacctgggtaactccctgcctaatctccaagcatttgaattaagcggcaacctctttcatgggaaaatcccatcatcaataacaaatgcttctaacttataccttctcgaattatcatacaataatttcaacgggggattggctagctcgatcggcaaacttactaaactgtcttggttaaatcttgagttcaatgaactccatggacgtaacagtgaagaccaggagtttctgaacagcattgccaattgcactgagctgcaaatgttctcgatagcttggaatcgtctagaaggccgtctgccaaattcatttggaaaccattcttttcaattgcaatatgtgcacatgggagaaaatcagctatcagggcattttccttctggcctagaaaaccttcacaatctggttgcgatagaattggctggaaatcgtttttcaggtgttcttccagattggctaggggctctcaaaagcttgcaaaaactatctgtcagggacaacaactttacagggttcattccatccaccctttccaatcttactaacttggtccaattcttcctatactcaaataagtttagtggacagataccggcaagttttggaaaccttgcggcccttgaaagactgggaatttcaaataacaaccttgatggtactattccagaggacatatttagaattccaacaatacaatacattaatttatctttcaacaatctaaagggacttcttcccttttacgttggcaatgcaaagcatctgatgtatctgatactttcatcaaataatctatctggagagatccctaacaccttgggcaactctgaaagcttgcaaataatcaggttcgatcataatattttcacaggaggcattcctacatcgttaggcaagttattcagcctgactttgcttaatctgtcttacaacaacttaacaggaccaataccagattctcttagcaatttgaagtatcttgggcaacttgatttgtcattcaaccatcttaatggtgaggtcccaacaaaaggaatattcaagaatgcaactgccgttcaaattgatggcaatcaggggttatgtggtggggtgctagcattacacctagctgcatgctacattgcacctttaagttcaagaagacacggacaatcattggcaatcaaaatcgcgataccattggccatcttggtatcactttctttggctgtattggtcttactactcttgagggggaaacaaaagggacaatctatatcttcgccactatctcatacagattttcccaaagtttcttacaatgatcttgcaagagcaactgagaggttttccatgtccaatttgattggcaaagggaggttcagttgtgtatatcaaggaaaactatttcagtgcaatgatgtggttgctgtgaaggtattcagcctagagacaaggggcgcacaaaaaagctttatttcagaatgtaatgctttaagaaatgtgagacaccgtaatctagttcctatcctaactgcatgctctagtattgattctaaaggaaatgacttcaaagctttagtgtataagtttatgtcaggtggggacttacataaattactatactcaaacagagatgatggagatgctccacatcaaaatcacattacattggctcagagaataaacattatggtggatgtatcagatgcactggagtacctgcaccatagcaaccaaggaacaattgttcactgtgacctgaagcctagcaacatccttctagatgataacatggttgctcatgttggagactttggccttgcaagatttaaaattgattcgacaacatcatctctaagttattcgaactcaacctcctcccttgtaataaagggaaccattggttatattgctccagaatgttcggatggtggtcaagtttcaactgcctcagatgtatacagctttggagttgttctcttggaaatatttattcggagaaggccgacagacgatatgtttatggatggattgagcattgcaaagtatacagctatcaacttccctgacaagatacttgaaattgttgatcccaagctgcatcaagaattgatcccctgttctacagagaaggaagagttggacccctgccaggaaactccaatagcagttgaggagaaaggcctacattgtctacgctctatggtaaacattggactctgttgcaccaagccaacaccgggagaacgcatcagcatgcaagaggtggctgccaagttgcacagaatcaaagatgcatatctcagggaatactag
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| Protein seq | MKIAATGQFLLVLMACSVIQIVCQSLHGNETDRLSLLDFKNAIILDPQQALVSWNDSTQVCSWEGVFCRVKAPNHVVALNLTNRDLVGTISPSLGNLTFLKHLILTGNAFTGQIPASLAHLHRLQTLSLAANTLQGRIPNLANYSDLMVLDLFRNNLAGKFPADLPHRLEKLRLSFNNITGTIPASLANITTLKYFACVNTSIEGNIPDEFSKLSALEILYLDINKLTGSFPEAVLNISALTGLSFAINDLHGEVPPDLGNSLPNLQAFELSGNLFHGKIPSSITNASNLYLLELSYNNFNGGLASSIGKLTKLSWLNLEFNELHGRNSEDQEFLNSIANCTELQMFSIAWNRLEGRLPNSFGNHSFQLQYVHMGENQLSGHFPSGLENLHNLVAIELAGNRFSGVLPDWLGALKSLQKLSVRDNNFTGFIPSTLSNLTNLVQFFLYSNKFSGQIPASFGNLAALERLGISNNNLDGTIPEDIFRIPTIQYINLSFNNLKGLLPFYVGNAKHLMYLILSSNNLSGEIPNTLGNSESLQIIRFDHNIFTGGIPTSLGKLFSLTLLNLSYNNLTGPIPDSLSNLKYLGQLDLSFNHLNGEVPTKGIFKNATAVQIDGNQGLCGGVLALHLAACYIAPLSSRRHGQSLAIKIAIPLAILVSLSLAVLVLLLLRGKQKGQSISSPLSHTDFPKVSYNDLARATERFSMSNLIGKGRFSCVYQGKLFQCNDVVAVKVFSLETRGAQKSFISECNALRNVRHRNLVPILTACSSIDSKGNDFKALVYKFMSGGDLHKLLYSNRDDGDAPHQNHITLAQRINIMVDVSDALEYLHHSNQGTIVHCDLKPSNILLDDNMVAHVGDFGLARFKIDSTTSSLSYSNSTSSLVIKGTIGYIAPECSDGGQVSTASDVYSFGVVLLEIFIRRRPTDDMFMDGLSIAKYTAINFPDKILEIVDPKLHQELIPCSTEKEELDPCQETPIAVEEKGLHCLRSMVNIGLCCTKPTPGERISMQEVAAKLHRIKDAYLREY |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0007020 | OsPr106_11g0007020.01 | Chr11 | 5885350 | 5888528 | - | NAM | ||
| CDS seq | atgaagattgctgcaactggacagtttctcttggtccttatggcatgcagtgtaatccaaatcgtgtgccaatcgttacatggaaatgagacagatcgactttcgctgcttgatttcaagaatgcaatcattttggatccacagcaagcattagtgtcctggaatgacagcactcaagtttgcagttgggaaggtgtcttttgtagggtgaaggccccaaaccatgttgttgcacttaaccttacaaatcgagacctagtagggacaatatccccttcacttggaaacctaacattcctcaagcatctaatcctaacaggaaatgctttcactggacagatccctgcatcccttgcccacttgcaccgtctccaaaccctctccttggctgctaacaccttacaaggaaggataccaaaccttgcaaattattctgatctcatggtgctagatctgtttagaaacaatctagctgggaaatttcctgcagatttacctcatcggctagaaaagctgagactttcattcaataatatcacgggaaccatacctgcttctcttgccaacatcacaacgctaaaatactttgcttgtgttaacactagtattgagggcaacatcccagatgagttttcgaagttgtctgcgctggagatcttgtatttggatatcaataagctaacaggtagctttccagaagccgtcctgaatatttctgctctaactggacttagcttcgctattaatgatcttcatggagaggtgccaccagacctgggtaactccctgcctaatctccaagcatttgaattaagcggcaacctctttcatgggaaaatcccatcatcaataacaaatgcttctaacttataccttctcgaattatcatacaataatttcaacgggggattggctagctcgatcggcaaacttactaaactgtcttggttaaatcttgagttcaatgaactccatggacgtaacagtgaagaccaggagtttctgaacagcattgccaattgcactgagctgcaaatgttctcgatagcttggaatcgtctagaaggccgtctgccaaattcatttggaaaccattcttttcaattgcaatatgtgcacatgggagaaaatcagctatcagggcattttccttctggcctagaaaaccttcacaatctggttgcgatagaattggctggaaatcgtttttcaggtgttcttccagattggctaggggctctcaaaagcttgcaaaaactatctgtcagggacaacaactttacagggttcattccatccaccctttccaatcttactaacttggtccaattcttcctatactcaaataagtttagtggacagataccggcaagttttggaaaccttgcggcccttgaaagactgggaatttcaaataacaaccttgatggtactattccagaggacatatttagaattccaacaatacaatacattaatttatctttcaacaatctaaagggacttcttcccttttacgttggcaatgcaaagcatctgatgtatctgatactttcatcaaataatctatctggagagatccctaacaccttgggcaactctgaaagcttgcaaataatcaggttcgatcataatattttcacaggaggcattcctacatcgttaggcaagttattcagcctgactttgcttaatctgtcttacaacaacttaacaggaccaataccagattctcttagcaatttgaagtatcttgggcaacttgatttgtcattcaaccatcttaatggtgaggtcccaacaaaaggaatattcaagaatgcaactgccgttcaaattgatggcaatcaggggttatgtggtggggtgctagcattacacctagctgcatgctacattgcacctttaagttcaagaagacacggacaatcattggcaatcaaaatcgcgataccattggccatcttggtatcactttctttggctgtattggtcttactactcttgagggggaaacaaaagggacaatctatatcttcgccactatctcatacagattttcccaaagtttcttacaatgatcttgcaagagcaactgagaggttttccatgtccaatttgattggcaaagggaggttcagttgtgtatatcaaggaaaactatttcagtgcaatgatgtggttgctgtgaaggtattcagcctagagacaaggggcgcacaaaaaagctttatttcagaatgtaatgctttaagaaatgtgagacaccgtaatctagttcctatcctaactgcatgctctagtattgattctaaaggaaatgacttcaaagctttagtgtataagtttatgtcaggtggggacttacataaattactatactcaaacagagatgatggagatgctccacatcaaaatcacattacattggctcagagaataaacattatggtggatgtatcagatgcactggagtacctgcaccatagcaaccaaggaacaattgttcactgtgacctgaagcctagcaacatccttctagatgataacatggttgctcatgttggagactttggccttgcaagatttaaaattgattcgacaacatcatctctaagttattcgaactcaacctcctcccttgtaataaagggaaccattggttatattgctccagaatgttcggatggtggtcaagtttcaactgcctcagatgtatacagctttggagttgttctcttggaaatatttattcggagaaggccgacagacgatatgtttatggatggattgagcattgcaaagtatacagctatcaacttccctgacaagatacttgaaattgttgatcccaagctgcatcaagaattgatcccctgttctacagagaaggaagagttggacccctgccaggaaactccaatagcagttgaggagaaaggcctacattgtctacgctctatggtaaacattggactctgttgcaccaagccaacaccgggagaacgcatcagcatgcaagaggtggctgccaagttgcacagaatcaaagatgcatatctcagggaatactag
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| Protein seq | MKIAATGQFLLVLMACSVIQIVCQSLHGNETDRLSLLDFKNAIILDPQQALVSWNDSTQVCSWEGVFCRVKAPNHVVALNLTNRDLVGTISPSLGNLTFLKHLILTGNAFTGQIPASLAHLHRLQTLSLAANTLQGRIPNLANYSDLMVLDLFRNNLAGKFPADLPHRLEKLRLSFNNITGTIPASLANITTLKYFACVNTSIEGNIPDEFSKLSALEILYLDINKLTGSFPEAVLNISALTGLSFAINDLHGEVPPDLGNSLPNLQAFELSGNLFHGKIPSSITNASNLYLLELSYNNFNGGLASSIGKLTKLSWLNLEFNELHGRNSEDQEFLNSIANCTELQMFSIAWNRLEGRLPNSFGNHSFQLQYVHMGENQLSGHFPSGLENLHNLVAIELAGNRFSGVLPDWLGALKSLQKLSVRDNNFTGFIPSTLSNLTNLVQFFLYSNKFSGQIPASFGNLAALERLGISNNNLDGTIPEDIFRIPTIQYINLSFNNLKGLLPFYVGNAKHLMYLILSSNNLSGEIPNTLGNSESLQIIRFDHNIFTGGIPTSLGKLFSLTLLNLSYNNLTGPIPDSLSNLKYLGQLDLSFNHLNGEVPTKGIFKNATAVQIDGNQGLCGGVLALHLAACYIAPLSSRRHGQSLAIKIAIPLAILVSLSLAVLVLLLLRGKQKGQSISSPLSHTDFPKVSYNDLARATERFSMSNLIGKGRFSCVYQGKLFQCNDVVAVKVFSLETRGAQKSFISECNALRNVRHRNLVPILTACSSIDSKGNDFKALVYKFMSGGDLHKLLYSNRDDGDAPHQNHITLAQRINIMVDVSDALEYLHHSNQGTIVHCDLKPSNILLDDNMVAHVGDFGLARFKIDSTTSSLSYSNSTSSLVIKGTIGYIAPECSDGGQVSTASDVYSFGVVLLEIFIRRRPTDDMFMDGLSIAKYTAINFPDKILEIVDPKLHQELIPCSTEKEELDPCQETPIAVEEKGLHCLRSMVNIGLCCTKPTPGERISMQEVAAKLHRIKDAYLREY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.122954 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0570000 | SBH | 1.042240 | 0.694925 | 1.137008 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07200 | SBH | 0.057823 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0172400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004940 | RBH | 0.027774 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004920 | RBH | 0.310265 | 0.0 | 0.101677 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004950 | SBH | 0.351912 | 0.244407 | 1.702016 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004840 | SBH | 0.216128 | 0.044515 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006760 | SBH | 17.078571 | 0.0 | 2.234451 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0061200 | RBH | 0.3629345 | 0.024787 | 0.005779 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004810 | RBH | 0.297846 | 0.021683 | 0.170285 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0061800 | SBH | 0.3220435 | 0.126046 | 0.0049055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007160 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007030 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004860 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004780 | SBH | 0.152264 | 0.0 | 0.102352 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004840 | RBH | 0.034522 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004840 | RBH | 0.012716 | 0.072135 | 0.295710 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004810 | SBH | 4.826402 | 0.871399 | 1.661659 |
