Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0570000 | OGI:11010520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:21297839-21301397 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATACATATGCATTCTAACCTTACTTCCTGGAGAGACATTGCGAGAAGGATAGTCTTCCTCATGGCAGGAGCAAGAGCAACAGCATTGTCCTGCTTCTCACTGTTGTTGTTCTGTTCCTATGCCCTGGTCTCTCCAGGGAGCAGCGATGCCACTGTTGTCGATGAGCTCGCGCTCCTCTCCTTCAAGTCCATGCTGTCAGGCCCATCCGATGGTTTGCTCGCGTCATGGAACACCTCAATCCACTACTGCGATTGGACAGGGGTTGTCTGCAGTGGCCGTCGGCAACCTGAAAGGGTTGTCGCGCTGCTGATGAACTCCTCCAGCCTTTCGGGCCGCATCTCGCCGTTCTTGGGTAACCTGTCCTTTCTCAACAGGTTGGACCTTCACGGCAACGGATTTATTGGGCAGATACCATCGGAGCTCGGCCATCTCAGCAGGCTTCGGGTGCTGAATCTGAGCACAAATTCTCTGGATGGAAGCATTCCTGTGGCTCTGGGAAGGTGCACCAATCTCACGGTGCTTGACCTCAGCAGTAACAAACTCCGAGATAAGATACCGACTGAGGTAGGAGCCTTGGAAAATCTTGTTGATCTGAGACTTCACAAGAATGGTTTGTCAGGAGAGATCCCTTTGCACATATCAAATTTGCTATCGGTGGAGTACCTGTATTTGAGAGATAACTGGTTCTCTGGTGAGATACCACCTGCTCTGGGCAATCTCACCAAGCTGCGGTATCTTGACCTTGCGAGCAACAAGCTATCAGGATCTATTCCTTCATCTCTGGGTCAGTTGTCTAGCTTATCTTTGTTCAACTTAGGCCATAACAACTTAAGTGGATTGATCCCCAATTCTATTTGGAACATCTCCTCTCTGACAGTGCTCTCTGTCCAAGTAAATATGCTGAGTGGAACAATACCGCCAAATGCGTTCGATAGTCTGCCTCGTCTCCAGAGCATTTCAATGGATACCAACAAGTTTGAAGGCTATATCCCTGCATCACTTGCTAATGCTTCCAATCTGTCCTTTGTTCAACTCAGTGGTAACTCTTTACGCGGTATTGTTCCTCCCAAGATTGGAAGGTTAAGCAATATCAATTGGCTGCAGCTTTCGAACAATTTGCTTCAAGCTAAGGAGACGAAAGATTGGAACTTCATATCGGCATTGACAAATTGCTCCCAGTTAGAAATGTTGGACTTGGGTGCTAACAAGTTTAGTGGAGTTCTTCCTGATTCACTCTCCAACCATTCCAGTTCACTATGGTTTCTCTCCCTTTCAGTCAATGAGATTACAGGGAGCATACCCAAAGATATAGGTAACCTCATCAGTTTACAACAGATTGATCTCAGTAATAACTATTTCATAGGAACTCTTCCATCTTCCTTGAGTAGGCTCAACAAATTGCAAGCTCTCTCTGTTTATAGCAACAATATCAGTGGATTAGTCCCATCAACCATTGGAAATCTTACAGAAATGAATTATTTGGACCTCGACTCCAATGCTTTTAGTGGCAGTATACCAAGCACACTCGGAAACATGACAAACTTGTTGGCACTAGGCCTTTCCGACAATAACTTCATAGGCCGAATTCCAATTTGAATACTTAGCATCCCTACGCTCTCCGATATTTTGGAGCTATCCAGTAATAACTTGGAGGGACCAATACCACAAGAAATTGGGAATCTTAAAAATCTTGTGGAGTTCCATGCATATTCCAACAGATTATCAGGTGAAATCCCTAGCACCCTTGGTGAATGCAAACTTCTCCGGAATCTCTATCTCCAAAACAATGATTTAACTGGTAGCATTCCCTGACTCCTGAGTCAATTGAAAGGTCTAGAAAATCTTGACCTCTCAAGCAACAATTTATCCGGTCAGGTTCCCAAGTTCTTTGGAAACATTACCATTCTCTATTATCTAAATCTTTCATTCAATAGCTTTGTTGGAGATATTCCAAACTTTGGTGTTTTTGCAAATGCTACTGCCATATCAATCCAAGGCAATGACAAACTTTGTGGTGGCATACCTGATCTACATTTGCCTCCATGTTCTTCAGAATCGGGAAAGAGAAGACATAAATTTCCACTGATCCCTGTTGTTGTTTCTCTCGCTGCAACGATTTTCATCCTTTCATTGATCTCTGCATTTCTGTTCTGGCGCAAACCTATGAGCAAACTTCCTTCAGCAACATCTATGCAAGGTTACCCATTGATCTCTTACCAACAAATAGTGAGAGCAACAGATGATTTCTCGACAACCAATTTGTTGGGTTCTGGAACATTTGGGACTGTGTTCAAAGGAAATATAAGTGCTCAAGATGGTGAAAATACAAGTCTTGTTGCTATAAAGGTCCTAAAACTTCAAACTCCTGGGGCACTCAAGAGTTTCTCAGCCGAATGCGAAGCACTGCGAGACTTACGGCACCGAAATCTCGTGAAGATAATTACAGTCTGCTCAAGTATTGATAACAGAGGGAATGACTTCAAAGCAATTGTACTTGATTTCATGTCTAATGGTAGTTTAGAAGGCTGGCTGCATCCTGACAAAAATGACCAAACAGACCAGAGGTACTTAAGTCTCCTTGAGAGAGTTTGTGTACTGCTTGATGTGGCTTATGGGTTGGATTACCTTCACTGCCATGGCCCAACACCTGTTGTGCATTGTGATCTTAAGTCAAGTAATGTGCTCTTGGATGCTGATATGGTAGCTCATGTTGGAGACTTTGGCCTCGCAAAAATTCTTGTTGAGGGAAGCTCAATGTTCCAACAGTCAACAAGCTCAATGGGATTTAGAGGGACAATTGGTTATGCTGCCCCAGGTTAGTGTTATATGTTTCCTTACCTGTTTGCACCCCAATCACCTTTTCAAAATTCAGAAGAAAATGTTTAATTTGATGCAACCTTTTGTTTTCCGATTTCTAGCTTATCCTACATTTCTGTTCTGTATTTCCAAATGTTTGATTCAACAGAGTATGGTGCTGGAAATATGGTATCAACAAATGGAGATATCTACAGCTATGGAATTCTAGTGTTGGAAACAGTTACCGGGAAGAAGCCTGCTGGTAGTGAATTCAGACAAGGATTAAGCCTTCGCGAATACGTGAAGTCTGGTCTAGAAGACGAAGTGATGGAAATTGTTGACATGCGTCTATGTATGGACCTTACGAACGGCATTCCAACTGGGAATGATGCCACATACAAAAGAAAGGTTGAATGCATCGTTTTACTTCTTAAACTTGGAATGTCCTGCTCTCAGGAATTACCCTCAAGCAGATCGTCAACCGGAGATATTGTGAAGGAGCTTCTGGCCATCAAAGAATCTCTCTCAGGCGACGAGCACAAGATGTGATGATGGAAGATATATATGCCAAATGTCATGCTGCGATGATTCATGTATCGATGATATATATGCTGTTGGATGACATTAGGCTCCTTTCTCAAGTGTTCCATGAAATGTTTTGAACATCGAATGATCACTGAAATTGTATCTTTCTGCTAATCTGTGAACCTGAGAGAATTATTTCCTGTATTTTAGTCAGAGCTCAATACTAGTTCATAAGCCT
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| CDS seq | ATGCATTCTAACCTTACTTCCTGGAGAGACATTGCGAGAAGGATAGTCTTCCTCATGGCAGGAGCAAGAGCAACAGCATTGTCCTGCTTCTCACTGTTGTTGTTCTGTTCCTATGCCCTGGTCTCTCCAGGGAGCAGCGATGCCACTGTTGTCGATGAGCTCGCGCTCCTCTCCTTCAAGTCCATGCTGTCAGGCCCATCCGATGGTTTGCTCGCGTCATGGAACACCTCAATCCACTACTGCGATTGGACAGGGGTTGTCTGCAGTGGCCGTCGGCAACCTGAAAGGGTTGTCGCGCTGCTGATGAACTCCTCCAGCCTTTCGGGCCGCATCTCGCCGTTCTTGGGTAACCTGTCCTTTCTCAACAGGTTGGACCTTCACGGCAACGGATTTATTGGGCAGATACCATCGGAGCTCGGCCATCTCAGCAGGCTTCGGGTGCTGAATCTGAGCACAAATTCTCTGGATGGAAGCATTCCTGTGGCTCTGGGAAGGTGCACCAATCTCACGGTGCTTGACCTCAGCAGTAACAAACTCCGAGATAAGATACCGACTGAGGTAGGAGCCTTGGAAAATCTTGTTGATCTGAGACTTCACAAGAATGGTTTGTCAGGAGAGATCCCTTTGCACATATCAAATTTGCTATCGGTGGAGTACCTGTATTTGAGAGATAACTGGTTCTCTGGTGAGATACCACCTGCTCTGGGCAATCTCACCAAGCTGCGGTATCTTGACCTTGCGAGCAACAAGCTATCAGGATCTATTCCTTCATCTCTGGGTCAGTTGTCTAGCTTATCTTTGTTCAACTTAGGCCATAACAACTTAAGTGGATTGATCCCCAATTCTATTTGGAACATCTCCTCTCTGACAGTGCTCTCTGTCCAAGTAAATATGCTGAGTGGAACAATACCGCCAAATGCGTTCGATAGTCTGCCTCGTCTCCAGAGCATTTCAATGGATACCAACAAGTTTGAAGGCTATATCCCTGCATCACTTGCTAATGCTTCCAATCTGTCCTTTGTTCAACTCAGTGGTAACTCTTTACGCGGTATTGTTCCTCCCAAGATTGGAAGGTTAAGCAATATCAATTGGCTGCAGCTTTCGAACAATTTGCTTCAAGCTAAGGAGACGAAAGATTGGAACTTCATATCGGCATTGACAAATTGCTCCCAGTTAGAAATGTTGGACTTGGGTGCTAACAAGTTTAGTGGAGTTCTTCCTGATTCACTCTCCAACCATTCCAGTTCACTATGGTTTCTCTCCCTTTCAGTCAATGAGATTACAGGGAGCATACCCAAAGATATAGGTAACCTCATCAGTTTACAACAGATTGATCTCAGTAATAACTATTTCATAGGAACTCTTCCATCTTCCTTGAGTAGGCTCAACAAATTGCAAGCTCTCTCTGTTTATAGCAACAATATCAGTGGATTAGTCCCATCAACCATTGGAAATCTTACAGAAATGAATTATTTGGACCTCGACTCCAATGCTTTTAGTGGCAGTATACCAAGCACACTCGGAAACATGACAAACTTGTTGGCACTAGGCCTTTCCGACAATAACTTCATAGGCCGAATTCCAATTTGA
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| Protein seq | MHSNLTSWRDIARRIVFLMAGARATALSCFSLLLFCSYALVSPGSSDATVVDELALLSFKSMLSGPSDGLLASWNTSIHYCDWTGVVCSGRRQPERVVALLMNSSSLSGRISPFLGNLSFLNRLDLHGNGFIGQIPSELGHLSRLRVLNLSTNSLDGSIPVALGRCTNLTVLDLSSNKLRDKIPTEVGALENLVDLRLHKNGLSGEIPLHISNLLSVEYLYLRDNWFSGEIPPALGNLTKLRYLDLASNKLSGSIPSSLGQLSSLSLFNLGHNNLSGLIPNSIWNISSLTVLSVQVNMLSGTIPPNAFDSLPRLQSISMDTNKFEGYIPASLANASNLSFVQLSGNSLRGIVPPKIGRLSNINWLQLSNNLLQAKETKDWNFISALTNCSQLEMLDLGANKFSGVLPDSLSNHSSSLWFLSLSVNEITGSIPKDIGNLISLQQIDLSNNYFIGTLPSSLSRLNKLQALSVYSNNISGLVPSTIGNLTEMNYLDLDSNAFSGSIPSTLGNMTNLLALGLSDNNFIGRIPI |
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| Function | Receptor kinase-like protein Xa21 [UniProtKB/Swiss-Prot:Q1MX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0570000 | OsNip_11t0570000-01 | Chr11 | 21297839 | 21301397 | + | RAP2018-11-26 | ||
| CDS seq | ATGCATTCTAACCTTACTTCCTGGAGAGACATTGCGAGAAGGATAGTCTTCCTCATGGCAGGAGCAAGAGCAACAGCATTGTCCTGCTTCTCACTGTTGTTGTTCTGTTCCTATGCCCTGGTCTCTCCAGGGAGCAGCGATGCCACTGTTGTCGATGAGCTCGCGCTCCTCTCCTTCAAGTCCATGCTGTCAGGCCCATCCGATGGTTTGCTCGCGTCATGGAACACCTCAATCCACTACTGCGATTGGACAGGGGTTGTCTGCAGTGGCCGTCGGCAACCTGAAAGGGTTGTCGCGCTGCTGATGAACTCCTCCAGCCTTTCGGGCCGCATCTCGCCGTTCTTGGGTAACCTGTCCTTTCTCAACAGGTTGGACCTTCACGGCAACGGATTTATTGGGCAGATACCATCGGAGCTCGGCCATCTCAGCAGGCTTCGGGTGCTGAATCTGAGCACAAATTCTCTGGATGGAAGCATTCCTGTGGCTCTGGGAAGGTGCACCAATCTCACGGTGCTTGACCTCAGCAGTAACAAACTCCGAGATAAGATACCGACTGAGGTAGGAGCCTTGGAAAATCTTGTTGATCTGAGACTTCACAAGAATGGTTTGTCAGGAGAGATCCCTTTGCACATATCAAATTTGCTATCGGTGGAGTACCTGTATTTGAGAGATAACTGGTTCTCTGGTGAGATACCACCTGCTCTGGGCAATCTCACCAAGCTGCGGTATCTTGACCTTGCGAGCAACAAGCTATCAGGATCTATTCCTTCATCTCTGGGTCAGTTGTCTAGCTTATCTTTGTTCAACTTAGGCCATAACAACTTAAGTGGATTGATCCCCAATTCTATTTGGAACATCTCCTCTCTGACAGTGCTCTCTGTCCAAGTAAATATGCTGAGTGGAACAATACCGCCAAATGCGTTCGATAGTCTGCCTCGTCTCCAGAGCATTTCAATGGATACCAACAAGTTTGAAGGCTATATCCCTGCATCACTTGCTAATGCTTCCAATCTGTCCTTTGTTCAACTCAGTGGTAACTCTTTACGCGGTATTGTTCCTCCCAAGATTGGAAGGTTAAGCAATATCAATTGGCTGCAGCTTTCGAACAATTTGCTTCAAGCTAAGGAGACGAAAGATTGGAACTTCATATCGGCATTGACAAATTGCTCCCAGTTAGAAATGTTGGACTTGGGTGCTAACAAGTTTAGTGGAGTTCTTCCTGATTCACTCTCCAACCATTCCAGTTCACTATGGTTTCTCTCCCTTTCAGTCAATGAGATTACAGGGAGCATACCCAAAGATATAGGTAACCTCATCAGTTTACAACAGATTGATCTCAGTAATAACTATTTCATAGGAACTCTTCCATCTTCCTTGAGTAGGCTCAACAAATTGCAAGCTCTCTCTGTTTATAGCAACAATATCAGTGGATTAGTCCCATCAACCATTGGAAATCTTACAGAAATGAATTATTTGGACCTCGACTCCAATGCTTTTAGTGGCAGTATACCAAGCACACTCGGAAACATGACAAACTTGTTGGCACTAGGCCTTTCCGACAATAACTTCATAGGCCGAATTCCAATTTGA
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| Protein seq | MHSNLTSWRDIARRIVFLMAGARATALSCFSLLLFCSYALVSPGSSDATVVDELALLSFKSMLSGPSDGLLASWNTSIHYCDWTGVVCSGRRQPERVVALLMNSSSLSGRISPFLGNLSFLNRLDLHGNGFIGQIPSELGHLSRLRVLNLSTNSLDGSIPVALGRCTNLTVLDLSSNKLRDKIPTEVGALENLVDLRLHKNGLSGEIPLHISNLLSVEYLYLRDNWFSGEIPPALGNLTKLRYLDLASNKLSGSIPSSLGQLSSLSLFNLGHNNLSGLIPNSIWNISSLTVLSVQVNMLSGTIPPNAFDSLPRLQSISMDTNKFEGYIPASLANASNLSFVQLSGNSLRGIVPPKIGRLSNINWLQLSNNLLQAKETKDWNFISALTNCSQLEMLDLGANKFSGVLPDSLSNHSSSLWFLSLSVNEITGSIPKDIGNLISLQQIDLSNNYFIGTLPSSLSRLNKLQALSVYSNNISGLVPSTIGNLTEMNYLDLDSNAFSGSIPSTLGNMTNLLALGLSDNNFIGRIPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.042240 | 0.694925 | 1.137008 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36200 | RBH | 0.724667 | 0.490703 | 0.265260 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0570000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017840 | RBH | 0.0 | 3.134441 | 0.379084 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017960 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017770 | RBH | 0.164332 | 9.540369 | 4.595458 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017450 | RBH | 0.0 | 0.047769 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017870 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0332300 | RBH | 0.364913 | 3.632384 | 1.859963 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018340 | RBH | 0.0 | 0.187807 | 0.284136 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0344600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018160 | RBH | 0.049340 | 0.036304 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018170 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017710 | SBH | 0.429796 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017610 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004850 | SBH | 0.056974 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017720 | SBH | 0.042523 | 0.0 | 0.112282 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018010 | SBH | 0.080130 | 5.532844 | 0.000000 |
