Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_02g0017900 | OGI:02045340 | 4/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr02:19077491-19080039 | ||||||||
| Gene Symbol | LP2, OsLP2 | ||||||||||
| DNA seq | atgcttcagagattatctcaaatagacctgtcctctaataatttcaatggtcaagttccaagctctttggggatgctttcagggctgattcgcctaaacgttgagagcaatatgcttaatgcaagtgataatgaaggctgggatttctttaatgcgttaagcaactgccgtaatctagagcagctttcattcacggataatcagctccaaggagtcataccaaattcagttggcaacctgtctgtcaatcttctatatctactaatgagtgaaaataaattatcaggtgtagttcccccaagcataggaaaccttacaagcttaattgaactcgggctagatgcaaacagccttactggtccaattgatgagtggattggaaagcaagaaaatctaacaagtttacatctcgaaaccaacaacttcactgggacaattccactctcccttgctaatcttacaaagctgacaaggctctatctagcgaataatgcattcgacggtattgtaacacccaacttgggaaggcttcaaccactgttggagttgaatcttagcaacaataatctccagggtagcatacctccagagttaggtaacctcaaacaattgtacatactagatctttcatcaaataaattcagtggtgcaattcctgaaactttaggccaatgtcaaaatttagttatccttcaaatggaacaaaatgttcttacaggaaatatcccaaccactttcacaaatctaaatagcttgagccttctcaatctttcccacaatgctttgtcgggccccttgccagctgttctaaatgatctaaagcttctcagtaagctagacctatcttacaacaacttcgaaggagagataccatgaaatggtatattcgacaattcgacggtggtttcactggatggcaatgcaggactatgtggaggagccatgactttgcgaatgcgtccatgtcctgtttctcatagagcaataagcgtaaacagattaatcaaaataTtgatcccaatatttggcttcatgtcgctcatattattgatctactttttactccttgggaagaagaggtcaagaagaacatcattatcagagccttcttttggtgagcattttgaaaaagtttcttataatgatcttgctcaagcaacaagggacttctcggaattcaacctcattgggaggggaagctacggttcggtatatcgaggaaaattaaaggaaagcaaaatagaagtggctgtgaaggttttcgaccttgagatgcatggagcagagagaagcttcatgtcagaatgtgaagcactaagaagcattcaacatcgaaatcttctttctatcagaactgcttgctcaacaggagataatacgggcagagagttttcaaagctttagtttttgattacatgcctaatgggaacctggatatgtggctacatcacaaagaggatgagaaaactccgaattatctaaacttaactcagagaataagcatagctgttaacattgctgatgctttggattatttgcaccacgactgcggaagaaccattgtgcatagtgatctgaagccaagcaacatccttctagatgacgatatgaatgctcttctgggagattttggaattgcacgtctatatcttgattctcagtcaacgtaccaaggctcagttagcacaattggtctgaagggaacaattggttatattcctccaggtatttgaagctatatattctcatagatttattttagtttcttattagcattcctctttttatgcaatcaaatcaatagtactatatactttgtgcatgttttccttttcagagtacggaggcgggggccatgcatcaacactaggagatgtttatagttttgggataatgttgttggagatttttacaggAaaaaggccaacagatcctatgttcacggacggacttgacattgtcagctttgtggacagaaactttccggatcaaatattccaagtcatcgatgttcgtctgaaggaagaatgcaacaacttatctcgagataacatggtatccgaagatacaatctatcaattgttggtgtctttgctacaagtagcactttcttgcacacgcccatcaccatctgaacgattgaacatgaagcaagcagcaaccaaaatacatgctatcaatgcgtcgcttcacggatggaatgaaaaaaagtatgcctcagttgatgagtagggtgaattgtacaacgtacatggacatacatacatatttttagagaagggaacatacatctgataaacacgtacgtattggttgtgtcttgtatagtataacaaattagcgtggcggcccgcgcaaattgcacattaccatgggcatattttttttctcacataatagcatatatattttcatattttattattaaaatatattaaaatagcaagataattttaaattctgtactaacttggtcaaagtaacccatgtgtaatatttatatactatatattatatatgtgatagttattaattattaattatttttt
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| CDS seq | atgcttcagagattatctcaaatagacctgtcctctaataatttcaatggtcaagttccaagctctttggggatgctttcagggctgattcgcctaaacgttgagagcaatatgcttaatgcaagtgataatgaaggctgggatttctttaatgcgttaagcaactgccgtaatctagagcagctttcattcacggataatcagctccaaggagtcataccaaattcagttggcaacctgtctgtcaatcttctatatctactaatgagtgaaaataaattatcaggtgtagttcccccaagcataggaaaccttacaagcttaattgaactcgggctagatgcaaacagccttactggtccaattgatgagtggattggaaagcaagaaaatctaacaagtttacatctcgaaaccaacaacttcactgggacaattccactctcccttgctaatcttacaaagctgacaaggctctatctagcgaataatgcattcgacggtattgtaacacccaacttgggaaggcttcaaccactgttggagttgaatcttagcaacaataatctccagggtagcatacctccagagttaggtaacctcaaacaattgtacatactagatctttcatcaaataaattcagtggtgcaattcctgaaactttaggccaatgtcaaaatttagttatccttcaaatggaacaaaatgttcttacaggaaatatcccaaccactttcacaaatctaaatagcttgagccttctcaatctttcccacaatgctttgtcgggccccttgccagctgttctaaatgatctaaagcttctcagactatgtggaggagccatgactttgcgaatgcgtccatgtcctgtttctcatagagcaataagcgtaaacagattaatcaaaataTtgatcccaatatttggcttcatgtcgctcatattattgatctactttttactccttgggaagaagaggtcaagaagaacatcattatcagagccttcttttggtgagcattttgaaaaagtttcttataatgatcttgctcaagcaacaagggacttctcggaattcaacctcattgggaggggaagctacggttcgagaataagcatagctgttaacattgctgatgctttggattatttgcaccacgactgcggaagaaccattgtgcatagtgatctgaagccaagcaacatccttctagatgacgatatgaatgctcttctgggagattttggaattgcacgtctatatcttgattctcagtcaacgtaccaaggctcagttagcacaattggtctgaagggaacaattggttatattcctccaggAaaaaggccaacagatcctatgttcacggacggacttgacattgtcagctttgtggacagaaactttccggatcaaatattccaagtcatcgatgttcgtctgaaggaagaatgcaacaacttatctcgagataacatggtatccgaagatacaatctatcaattgttggtgtctttgctacaagtagcactttcttgcacacgcccatcaccatctgaacgattgaacatgaagcaagcagcaaccaaaatacatgctatcaatgcgtcgcttcacggatggaatgaaaaaaagtatgcctcagttgatgagtag
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| Protein seq | MLQRLSQIDLSSNNFNGQVPSSLGMLSGLIRLNVESNMLNASDNEGWDFFNALSNCRNLEQLSFTDNQLQGVIPNSVGNLSVNLLYLLMSENKLSGVVPPSIGNLTSLIELGLDANSLTGPIDEWIGKQENLTSLHLETNNFTGTIPLSLANLTKLTRLYLANNAFDGIVTPNLGRLQPLLELNLSNNNLQGSIPPELGNLKQLYILDLSSNKFSGAIPETLGQCQNLVILQMEQNVLTGNIPTTFTNLNSLSLLNLSHNALSGPLPAVLNDLKLLRLCGGAMTLRMRPCPVSHRAISVNRLIKILIPIFGFMSLILLIYFLLLGKKRSRRTSLSEPSFGEHFEKVSYNDLAQATRDFSEFNLIGRGSYGSRISIAVNIADALDYLHHDCGRTIVHSDLKPSNILLDDDMNALLGDFGIARLYLDSQSTYQGSVSTIGLKGTIGYIPPGKRPTDPMFTDGLDIVSFVDRNFPDQIFQVIDVRLKEECNNLSRDNMVSEDTIYQLLVSLLQVALSCTRPSPSERLNMKQAATKIHAINASLHGWNEKKYASVDE |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0017900 | OsPr106_02g0017900.01 | Chr02 | 19077491 | 19079722 | + | NAM | ||
| CDS seq | atgcttcagagattatctcaaatagacctgtcctctaataatttcaatggtcaagttccaagctctttggggatgctttcagggctgattcgcctaaacgttgagagcaatatgcttaatgcaagtgataatgaaggctgggatttctttaatgcgttaagcaactgccgtaatctagagcagctttcattcacggataatcagctccaaggagtcataccaaattcagttggcaacctgtctgtcaatcttctatatctactaatgagtgaaaataaattatcaggtgtagttcccccaagcataggaaaccttacaagcttaattgaactcgggctagatgcaaacagccttactggtccaattgatgagtggattggaaagcaagaaaatctaacaagtttacatctcgaaaccaacaacttcactgggacaattccactctcccttgctaatcttacaaagctgacaaggctctatctagcgaataatgcattcgacggtattgtaacacccaacttgggaaggcttcaaccactgttggagttgaatcttagcaacaataatctccagggtagcatacctccagagttaggtaacctcaaacaattgtacatactagatctttcatcaaataaattcagtggtgcaattcctgaaactttaggccaatgtcaaaatttagttatccttcaaatggaacaaaatgttcttacaggaaatatcccaaccactttcacaaatctaaatagcttgagccttctcaatctttcccacaatgctttgtcgggccccttgccagctgttctaaatgatctaaagcttctcagactatgtggaggagccatgactttgcgaatgcgtccatgtcctgtttctcatagagcaataagcgtaaacagattaatcaaaataTtgatcccaatatttggcttcatgtcgctcatattattgatctactttttactccttgggaagaagaggtcaagaagaacatcattatcagagccttcttttggtgagcattttgaaaaagtttcttataatgatcttgctcaagcaacaagggacttctcggaattcaacctcattgggaggggaagctacggttcgagaataagcatagctgttaacattgctgatgctttggattatttgcaccacgactgcggaagaaccattgtgcatagtgatctgaagccaagcaacatccttctagatgacgatatgaatgctcttctgggagattttggaattgcacgtctatatcttgattctcagtcaacgtaccaaggctcagttagcacaattggtctgaagggaacaattggttatattcctccaggAaaaaggccaacagatcctatgttcacggacggacttgacattgtcagctttgtggacagaaactttccggatcaaatattccaagtcatcgatgttcgtctgaaggaagaatgcaacaacttatctcgagataacatggtatccgaagatacaatctatcaattgttggtgtctttgctacaagtagcactttcttgcacacgcccatcaccatctgaacgattgaacatgaagcaagcagcaaccaaaatacatgctatcaatgcgtcgcttcacggatggaatgaaaaaaagtatgcctcagttgatgagtag
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| Protein seq | MLQRLSQIDLSSNNFNGQVPSSLGMLSGLIRLNVESNMLNASDNEGWDFFNALSNCRNLEQLSFTDNQLQGVIPNSVGNLSVNLLYLLMSENKLSGVVPPSIGNLTSLIELGLDANSLTGPIDEWIGKQENLTSLHLETNNFTGTIPLSLANLTKLTRLYLANNAFDGIVTPNLGRLQPLLELNLSNNNLQGSIPPELGNLKQLYILDLSSNKFSGAIPETLGQCQNLVILQMEQNVLTGNIPTTFTNLNSLSLLNLSHNALSGPLPAVLNDLKLLRLCGGAMTLRMRPCPVSHRAISVNRLIKILIPIFGFMSLILLIYFLLLGKKRSRRTSLSEPSFGEHFEKVSYNDLAQATRDFSEFNLIGRGSYGSRISIAVNIADALDYLHHDCGRTIVHSDLKPSNILLDDDMNALLGDFGIARLYLDSQSTYQGSVSTIGLKGTIGYIPPGKRPTDPMFTDGLDIVSFVDRNFPDQIFQVIDVRLKEECNNLSRDNMVSEDTIYQLLVSLLQVALSCTRPSPSERLNMKQAATKIHAINASLHGWNEKKYASVDE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_02g0017900 | OsPr106_02g0017900.02 | Chr02 | 19078236 | 19080039 | + | IsoSeq | ||
| CDS seq | aatagcttgagccttctcaatctttcccacaatgctttgtcgggccccttgccagctgttctaaatgatctaaagcttctcagtaagctagacctatcttacaacaacttcgaaggagagata |
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| Protein seq | NSLSLLNLSHNALSGPLPAVLNDLKLLSKLDLSYNNFEGEI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 19079215 | 19079406 | + | OsPr106_02g0017900.02 | OsPr106_02g0017900.01,OsPr106_02g0017900.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 117.676010 | 0.680283 | 16.440817 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615400 | SBH | 1.810530 | 3.247144 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40240 | SBH | 43.565369 | 39.550552 | 4.059873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | SBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | SBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | SBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0004020 | SBH | 0.031011 | 0.040793 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017890 | RBH | 156.941895 | 6.344275 | 27.008585 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0258400 | RBH | 0.833369 | 2.232354 | 3.1470415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018050 | SBH | 2.032622 | 0.0 | 1.961450 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0061900 | SBH | 4.7170635 | 2.200798 | 1.7117715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024840 | SBH | 0.416905 | 0.027276 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017750 | SBH | 10.666207 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018710 | SBH | 98.102180 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G024900 | SBH | 0.199466 | 0.184480 | 0.440630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024740 | SBH | 0.0 | 0.0 | 1.133679 |
