Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0258400 | OGI:02045340 | 4/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:16653432-16654191 | ||||||||
| Gene Symbol | LP2, OsLP2 | ||||||||||
| DNA seq | CTATATACAGTATAGGTTCTTGAGCTTCACGAAGCTCGGCATCACGCCGGCGAACTTGTTGCCGTAGAGGAGTATCTCAGCCAAGGCGCTGCATTTGGTCAGGTTGTCCATGAACTCCCAGCCGCCGCCGGCGTCGGTCGCCGTGAGCTTGTTGTTCGACAGCTCCAGCGACAGCGCGCAGAGCGTGCCGATCTCGGCGGGCACCTGCCCGGCGAAGCTGTTATTTGCGAGGTTGAGAGCCACCAGCGCCGTGGCGTTCGACAGCGACGCCGGGATAGGGTGGGCAGAATAAAACCGAACCGAAGAACTAAAAAAAGACCGAGACCGAAAAAACCTAGACCAAGAAATTCGGTCTCAACCATTAAGATCGAAATTTGTTCGGTTAATTCGGTCAGGGGTCTCAATTAACCGAATTGACCGAAATAACCGAATTGGGCCCAATAGATCTTGTTGGCCCAATAAGCCCACTAATTTAGAAGAAACCCTAGAGGCAAACCGATCCCCATCCAATTCACATGTGCGCCGCCGTCCCCATCTGACCATCCCCATCCTCCTGTGCGCCGTCCCCATCCCCATCCCCATACTCCTTTGCACCTTCGCGCCGCCTCTTGACCGCATCAGCGTGCGCCTCTCGCCTCCGCCTCCATCGCCGCCCGTGCGCCGCCTCCAACCAGCCTACCTCCGCGGCTCCGCCTCCATCGCCATGCGCCGACTCCAGCCGGGCCGCCTCCACCTCCAGCCGGCGCGCCTCCACTTCCAT
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| CDS seq | ATGGAAGTGGAGGCGCGCCGGCTGGAGGTGGAGGCGGCCCGGCTGGAGTCGGCGCATGGCGATGGAGGCGGAGCCGCGGAGGTAGGCTGGTTGGAGGCGGCGCACGGGCGGCGATGGAGGCGGAGGCGAGAGGCGCACGCTGATGCGGTCAAGAGGCGGCGCGAAGGTGCAAAGGAGTATGGGGATGGGGATGGGGACGGCGCACAGGAGGATGGGGATGGTCAGATGGGGACGGCGGCGCACATTTCTTCGGTTCGGTTTTATTCTGCCCACCCTATCCCGGCGTCGCTGTCGAACGCCACGGCGCTGGTGGCTCTCAACCTCGCAAATAACAGCTTCGCCGGGCAGGTGCCCGCCGAGATCGGCACGCTCTGCGCGCTGTCGCTGGAGCTGTCGAACAACAAGCTCACGGCGACCGACGCCGGCGGCGGCTGGGAGTTCATGGACAACCTGACCAAATGCAGCGCCTTGGCTGAGATACTCCTCTACGGCAACAAGTTCGCCGGCGTGATGCCGAGCTTCGTGAAGCTCAAGAACCTATACTGTATATAG
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| Protein seq | MEVEARRLEVEAARLESAHGDGGGAAEVGWLEAAHGRRWRRRREAHADAVKRRREGAKEYGDGDGDGAQEDGDGQMGTAAHISSVRFYSAHPIPASLSNATALVALNLANNSFAGQVPAEIGTLCALSLELSNNKLTATDAGGGWEFMDNLTKCSALAEILLYGNKFAGVMPSFVKLKNLYCI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0258400 | OsMH63_02T0258400.1 | Chr02 | 16653432 | 16654191 | - | maker | ||
| CDS seq | ATGGAAGTGGAGGCGCGCCGGCTGGAGGTGGAGGCGGCCCGGCTGGAGTCGGCGCATGGCGATGGAGGCGGAGCCGCGGAGGTAGGCTGGTTGGAGGCGGCGCACGGGCGGCGATGGAGGCGGAGGCGAGAGGCGCACGCTGATGCGGTCAAGAGGCGGCGCGAAGGTGCAAAGGAGTATGGGGATGGGGATGGGGACGGCGCACAGGAGGATGGGGATGGTCAGATGGGGACGGCGGCGCACATTTCTTCGGTTCGGTTTTATTCTGCCCACCCTATCCCGGCGTCGCTGTCGAACGCCACGGCGCTGGTGGCTCTCAACCTCGCAAATAACAGCTTCGCCGGGCAGGTGCCCGCCGAGATCGGCACGCTCTGCGCGCTGTCGCTGGAGCTGTCGAACAACAAGCTCACGGCGACCGACGCCGGCGGCGGCTGGGAGTTCATGGACAACCTGACCAAATGCAGCGCCTTGGCTGAGATACTCCTCTACGGCAACAAGTTCGCCGGCGTGATGCCGAGCTTCGTGAAGCTCAAGAACCTATACTGTATATAG
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| Protein seq | MEVEARRLEVEAARLESAHGDGGGAAEVGWLEAAHGRRWRRRREAHADAVKRRREGAKEYGDGDGDGAQEDGDGQMGTAAHISSVRFYSAHPIPASLSNATALVALNLANNSFAGQVPAEIGTLCALSLELSNNKLTATDAGGGWEFMDNLTKCSALAEILLYGNKFAGVMPSFVKLKNLYCI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.833369 | 2.232354 | 3.1470415 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0461300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g26310 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0461300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0018540 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0018300 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017900 | RBH | 117.676010 | 0.680283 | 16.440817 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0278100 | RBH | 0.4325725 | 0.8989115 | 3.043596 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017750 | SBH | 10.666207 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
