Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0461300 | OGI:02045340 | 4/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:15452946-15453705 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATATACAGTATAGGTTCTTGAGCTTCACGAAGCTCGGCATCACGCCGGCGAACTTGTTGCCGTAGAGGAGTATCTCAGCCAAGGCGCTGCATTTGGTCAGGTTGTCCACGAACTCCCAGCCGCCGCCGGCGTCGATCGCCGTGAGCTTGTTGTTCGACAGCTCCAGCGACAGCGCGCAGAGCGTGCCGATCTCGGCGGGCACCTGCCCGGCGAAGCTGTTATTTGCGAGGTTGAGAGCCACCAGCGCCGTGGCGTTCGACAGCGACGCCGGGATAGGGTGGGCAGAATAAAACCGAACTGAAGAACCAAACCGAAAAGACCGGACGAAAAAACCGAGACCGAGAAATTCGGTCTCAACCATTAAGACCGAAATTTGTTCGGTTAATTCGGTCAGGGTCTCAATTAACCGAATTGACCGAAATAACCGAATTGGGTCCAATAGATCTTGTTGGCCCAATAAGCCCACTAATTTAGAAGAAACCCTAGAGGCAAACCGATCCCCATCCATTTCACATGTGCGCCGCCGTCCCCATCTGACCATCCCCATCCTCCTGTGCGCCGTCCCCATCCCCATCCCCATCCTCCTTTGCACCTTCGCGCCGCCTCTTGACCGCATCAGCGTGCGCCTCTCGCCTCCGCCTCCATCGCCGCCCGTGCGCCGCCTCCAACCAGCCTACCTCCGCGGCTCCGCCTCCATCGCCATGCGCCGACTCCAGCCGGGCCGCCTCCACCTCCAGCCGGCGCGCCTCCACTTCCAT
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| CDS seq | ATGGAAGTGGAGGCGCGCCGGCTGGAGGTGGAGGCGGCCCGGCTGGAGTCGGCGCATGGCGATGGAGGCGGAGCCGCGGAGGTAGGCTGGTTGGAGGCGGCGCACGGGCGGCGATGGAGGCGGAGGCGAGAGGCGCACGCTGATGCGGTCAAGAGGCGGCGCGAAGGTGCAAAGGAGGATGGGGATGGGGATGGGGACGGCGCACAGGAGGATGGGGATGGTCAGATGGGGACGGCGGCGCACATCTTCGCCGGGCAGGTGCCCGCCGAGATCGGCACGCTCTGCGCGCTGTCGCTGGAGCTGTCGAACAACAAGCTCACGGCGATCGACGCCGGCGGCGGCTGGGAGTTCGTGGACAACCTGACCAAATGCAGCGCCTTGGCTGAGATACTCCTCTACGGCAACAAGTTCGCCGGCGTGATGCCGAGCTTCGTGAAGCTCAAGAACCTATACTGTATATAG
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| Protein seq | MEVEARRLEVEAARLESAHGDGGGAAEVGWLEAAHGRRWRRRREAHADAVKRRREGAKEDGDGDGDGAQEDGDGQMGTAAHIFAGQVPAEIGTLCALSLELSNNKLTAIDAGGGWEFVDNLTKCSALAEILLYGNKFAGVMPSFVKLKNLYCI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0461300 | Os02t0461300-00 | Chr02 | 15452946 | 15453705 | - | irgsp1_rep | ||
| CDS seq | ATGGAAGTGGAGGCGCGCCGGCTGGAGGTGGAGGCGGCCCGGCTGGAGTCGGCGCATGGCGATGGAGGCGGAGCCGCGGAGGTAGGCTGGTTGGAGGCGGCGCACGGGCGGCGATGGAGGCGGAGGCGAGAGGCGCACGCTGATGCGGTCAAGAGGCGGCGCGAAGGTGCAAAGGAGGATGGGGATGGGGATGGGGACGGCGCACAGGAGGATGGGGATGGTCAGATGGGGACGGCGGCGCACATCTTCGCCGGGCAGGTGCCCGCCGAGATCGGCACGCTCTGCGCGCTGTCGCTGGAGCTGTCGAACAACAAGCTCACGGCGATCGACGCCGGCGGCGGCTGGGAGTTCGTGGACAACCTGACCAAATGCAGCGCCTTGGCTGAGATACTCCTCTACGGCAACAAGTTCGCCGGCGTGATGCCGAGCTTCGTGAAGCTCAAGAACCTATACTGTATATAG
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| Protein seq | MEVEARRLEVEAARLESAHGDGGGAAEVGWLEAAHGRRWRRRREAHADAVKRRREGAKEDGDGDGDGAQEDGDGQMGTAAHIFAGQVPAEIGTLCALSLELSNNKLTAIDAGGGWEFVDNLTKCSALAEILLYGNKFAGVMPSFVKLKNLYCI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0461300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g26310 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025030 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025210 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025060 | SBH | 8.845984 | 0.000000 | 17.735216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013400 | SBH | 0.002078 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0024710 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0258400 | RBH | 0.833369 | 2.232354 | 3.1470415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0024610 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0278100 | RBH | 0.4325725 | 0.8989115 | 3.043596 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013730 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0024650 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013790 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024800 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013440 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025050 | SBH | 3.565824 | 0.0 | 3.907463 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0024900 | SBH | 21.950468 | 8.298501 | 18.806587 |
