Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_02g0013790 | OGI:02032660 | 4/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr02:11789799-11799733 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagaacggcggcggcgacgcgtcggcggcggcgtggcggttcggggcggcgaacccggcgatggaggcggcgaggtcgcagagcatccgcgcgctggtgtaccgggtgtacgcctgcctcgacaggggcgacgcgcggtccgtggcgccgctcggacacggcgaccccgccgcgttcgcgtgcttccgcgcggcgccggcggccacgggcgccgtcgtcgccgccgccgcctccggcgcgcacaacagctacgcgccggccgccggaatcgcggaggcgtgcaggtacattgttttccttatccgtttactcaggtagtgtactttttgctgccgttgcttactgtcatttactcttgggctggattagaaggctcgggacgaaagaagtccaggcccaagttacatacatgggcccaagctaccaagtactatagctagctacgctgcttctggcctttggacctagcaaatatcactctcagtactatcattgtcgtgaggaataagttcaccggaggtccctccacttaacagcgagattttttgaggtcccttaaccacaaaaccagaaatctccacccctaaactatacaaaaccgttcactcaaggtccctaagcagtatatatgggtggtttcgctgacgtggcatcctagtcagcaaataaatttttaaaaagtatgtggagcctacatgtcagctgcacaTtttttttcttctctttttctttttcttctcttctcttttctctcctctctccttttcttcagcgagggaggcggcggcaggcggagcagtggagggtgagcgcggcagcggagtggaggcgggcgcgagcacggccgcgggcagagaagcgagcagcggggcgcgtcacgtcgctggacgtgtccatgagccgcctcgccggcgagctctcaccggccgtcgccaacctcacgcagctcgagctactcatcaacctcacctccaacgccttctccgggagcatcgccgatggcctcggctggctccggcggatgtggtatctcagtgtcacgcccagaaatttaacccaaatttccagactattttgcgtattaaatccctgtccaggaccagctagggtacacaaaacgacaagtaatatacagttccaaatgtaaataaagcgtaaaatacttacggaagaggcacttagtcctcacaccgaaacagaacgacagcagcggaaaaaggcgatcctagcggggcttcagctccactccacaagcaaaactcaactggggtctgagccttggtcctctaactctatcttcagctcagaagcacaacacttctgaaaagggggaataaaagcaagactgagtacaaccaccgtactcagcaagccacactaacgatgcagatgtgcaaggggatacaaggatggtttgtggctatttgcataaaggcggttgtaaaacattttattgagcaaaacagtaaaactgttgagtaattaaagtaacattaaatctccactgatcaacgctacaccacgttgaacaggcccaaccaacccacctgaactacagtgtattggatcgatttattaagatgggactaatcacggtgaatctggtcgaccgcccataaccgcgggcacggctattcgaataactttactctgatcagaggtgtacaactgtacccataagacacagccccacgacacgtttccgtgcgccgacatgccaccacgacataccggaaagaggccgtgacaggacccttcgcataaccccctctagccaagcacaccacacctcaggtttcacccccgtccccagcgggcaacgggcagtcccctctcgtgcctaggtgaatccggaagcgacagaggccgtcgcagggcccgccctctccatcacgcccacccttgcctggatgcgtcgactagaggaaagctacactacaagcccagccgttgcccacgctggcttgtggtaagtacgataagttcttccagggcatcccgcaaaccggtccttaactgccatgggtgcgaccagcaaaaccatgcacccatagcccaccattcagtcgcattttagttggataattacgaccatgaagcatggccagatgtctcgagcacgcagctcattctgatactaaaaggtctaatacggtaattatcccatcaactgagctagtggtaattaagcatggctaagcatatagttctagctaggtcacataagtaacatgagctagtcgatttattacccaatgttgacaaaggacatatatcaagtaaatatggcacaagcgagcagataggtaaaaccctgaccccatgtaattagcaaaatatgcatatttatttgcaaacagtaaaacattagtaaattgggatcaacatgctcaaggggaatatgtgacttgccttgcttcttcaaacaatcttccgaactcttatccttgcgaccgtgatctttcgaaacgacggattctacacacaggcacgcaaaacgaggaaaaactctaataaaaaccaaggaaacagtacataaaaagtaaacaaacatgtagagctcaattttagatgaattttgcaagttgaatggctcaattcggagtttgaatgaattagatatgaattttagaagttttgagccatttaaatgaatttctagaactattaacgaattattgtgcaattgttaattattttatcaaaggaaaaggctcctgctggcgtcatcaaagggcagcggcgccgacaggcgggccccacatgacagcgggcaagggagtggtccaccgtgaactgggaccacggggtggtccaccgccggtccacgggaaccgacggcccagatcagcccgagctgatcgggcggccatggggtggcgcggttgagcacgggcacagctcaggccggcccggccgagcgacggctcacggcggcgcgacctcctgcggcgacggccgacgcacgcgggaaagcggtggcgcggcgcggcaaggggatccgggcggcctaggcgagcggggcggcgacaagccggccggccgacctaacggcggcggcgcacggcccggtggtcgccggcggcggccaccggcgcggcagcacgcacgggagacagaggagggaggcaaggagggagatgaggagctcaccaaggacgcgacgacgaggggcggggaaaggcgggggagctcggcgtcggcgctcctcgggacgaaggcggaacggcagcccggcggcgtagggtggaggtggcttgggatgcactgtggaagggtggttgcggcgattaaatggggaaacggagcggaggccggagtgcggcgaggcacggagaagccggcggtgcaaacggcgcggcgcggcagtggctagggcggcggctagaggtggccggagcacgccggggaccgatggagagagggagcacggtggagaggtggttcgcgtggtggaaggggaggaagaaacggcggccgagcgtgcccttgaggtggcaaagccagcggtggcggcggagcagtgcggcggcgaccctagcgacgggaaacggcggccggagttcgccagagtgtggcggcgcgcgggagcggcgtggggagagtgagggagagagtgccgggcccgggaaacaaggggaaatggacgaggggagcacgggggtgctttttatgggctcgggaaggcgggatcgaggccggacgtggcggaatcggccggcgaagtggggcgccgacgtggggtggtggaggggttaaccggcgccgattttcgcggggagagtggggggaaaggtggaggaggtggaggggatcgatttcacgcgctcgtggggcggggtggagcgcgggagccgcggcgtcgtggggtgaaaccggcggccatggcggcagttggggcgacgggaggttggggaagaagatgacaggtagggcctcgggtcccacctgtcggggagagagagagatgggaaaacgggcgagggaggtaaagcagacttgagggagagagagccgagtgggccgagggaggaggccggcccgagagggagagaaaaggggcgcgcgggccacgggagagaaggaagacttgggccgagaatggcccaaagagaggaagggggattttaattgtttttctttttatttagttggttaaaatgaacttggtgcttttaaaattatttcttgagctccgaaaattcacggaaaattctagagagtacattagggcacaaagaatattacagaatattcccggccaatgatttttaaaggaaattttaatttcctccataattccacttgattaaattggtttaacttttatttaatttctagaaaatgcattattaaatgattttttaaacccgaacgaaaatcggggcgttacactcagcctatgcgacaacgcgtttgccggcgagatacctgatgcgctccacaattgcaccgcccttgacgtcgcgtacctcaaaaacaacaacctcgatcgtcggcggcattccacggtggcttgacgcgttgccgaatctcacggtgctccagctcagccacaactcgctcttcggccacatcccgccatcgctggcgaacctcacgaagatcgtgcagctcgagttcgaccagaaccttctgggaagttccatccccgacggcttgtcacacctcccggcgctccgcatgttagccttgtcgcagaacagcctcaccagagagatcccgccgagtttcttcaacatgacgtcgttgcaaggtctcgcactcgcaaacaacgtgttctgtggggagctcccagccgatcgacgtgggcgcgcgtggaccagcacattcctcccaagttctaaacgcagttcaaaccatacaagtgtaaaacttcatcaccgaattcgcatttctatctactccacgattcgaacgtcaactagcgataacactttagtctgtaccacgagttctgttgaaattataagcacataataatttaatttattctataaataaatcatgacattgcagatgtaaactagattgaacgcatcattagatctacacatgtaaattaagcagtaaaacatgaacagatcaaatatgcacaacatgttgaacacgtaccgaggtgacggaaagaccggttgctcggcaggaactactcgcggttgcgagcgtcgacgaaggcgcgaagcatgcgagcaaagaggaagacgagccgtcgcgaacgaacagggagcagtcgcgcgaagcgcttcccaaaaaccttattgccgccttctcccggtgcaggacgtcgaaggcagaggttccggagactgcaagagtgtaatcacattctcacctctaattagcttaatgtttaagataacatcagctactcccaaatccttcatatcaaaattttgagacaagaatgatttaacctcatttatcacctcaaggtttgttccaaatatcagtatgtcgtcaacatacaagcacaaaataactccctcacccccaccatggcgatagtacacacatttatctgcctcattgactgcaaagcctgcagatgtcaatgttttgtcaaatttctcatgccattgcttaggagcttgtttcagaccatacaaagacttcaacaatttgcacactttgccttcttgaccttcaactacaaacccatcaggttgatccatatagatctcctcatccagctctccattaagaaaagctgtcttaacgtccatttgatgaacgagaagtccatttgatgaacgagaagaccatgtgaggctgctagggaaagtagcacacgaattgtggtcaatctagcaacaggtgagtaagtgtcaaagaaatcttcgccttttttctgagtatagcccttagcaacaagccgagccttatacttttcaatagtaccgtcaagcataagcttcttcttgaacacccacttgcaccccacaagtttacacctatagggtcgctctgtcacctcccaagtcccgttagcgataatggaatccatttcactatggacaacctccttcgagtagtctgcatcaggagatgcatatgcttctgaaattgacttaggagtgtcatccacgaggtacacagtgaaatcatcaccaaaggacttagccgtcctttgtctcttactccttcgaggagcttcactgacatcctcctcagagacatgttcatgtgtatgttcagtttgttctggtggtgtgattgaactgggaattatttcagagggttgcctcgaaccactatgtgtatccttcattgggaaaaagctctcaaagaaggtagcatcacgagactccataattataccaacatgcatgtccggtacctcggatttaactattaaaaatctataggcaatgctatgatgagcatatcctagaaagacacagtctacagtcttaggtcaaattttgcgcttcttcgttattagtacattgactttcgccaagcacccccatgtgcacaaataagaaagtgatggttttctcccaatccatatctcatatggtgttttgtccttatttctgttaggaactctgtttaacacataatttgaggtcaaaaatgcctccctccaccatgccttaggtattcccgcggtgtccaacatggcattcaccaagtcagtcagtgtgcggttcttcttttcagcaatcccattagactcgggagaatagggaggcgtcctctcatgtatgatgccatgttcctcacaaaataagtcaaactcgttcgagaaaaactctccaccacgatcagacctaagcctttttatctttctgtcaagttgattttcaacttctgccttataaattttaaaatagtctagagcctcgtcttttgttttcaacaagtacacatagcaaaatctagtagcatcatcaatcaacgtcatgaaatatcgttttccacccttcgtcaacaccccattcatttcacaaagatctgaatgtaggagttctattggtgccaagtttctcttctcggcagccttgtgaggcttgcgaggttgcttcgattgcacacacctatggcacttagaacctttgacaatgaaaaacttaggaattaaacatatgctggaaagccgagacatcaagccaaaattaatatgacataaacgtgagtgccaaacattagcctcatcatcctcacagacttattgcagaaatcagaaagggaaaagcggaacaggcctccacactcataacctttaccattaaaatatccatgtttagacacgactactttattagactcaaaaaccaacttaaatttgtctctagttagacgggagccactaacaagattcctatcgatagaagggacatgctgcacgttcttcagctgcacgatctttcccgaagtaaacttcagatctaccgtgccaacaccatgaacagaagcatgtgacccattccccattaggacggtggaaccccgtgcgacctaataagaagaaaacaatgagatgtcagcacaaacatgtacattggccccagtatcaacccaccaattagtagactgattaactgaaaaaacagtaggtaaattaccatacccgctcccatctccagtgttgccaatggtcacattagcagacttagaagtctgccctgcaggtgccttcatccccttgcactgtggacacttactagccagatgaccaggttgcccacacacaaagcaagtcctctcatcctggttaggattgttgttcttcttctgcttcttgaagttggtggtctgttgagctttgtatttccccttactcttgttctgggccttatgcacaacattggcactggactgcccaccatcgcccttagacgcggcgtctttttcccgagctttctcctcaacatcaagagacgctatcaacccctcaacggagtattcctgtctcttgtgtttgagtgcagtaccgaaacttctccatgatggaggtagtttcgcaataatgcacccagccacaaatttgtcgggtaagacacacttaaggagttcgagttccttagccatggtttgtatctcatgagcctgttcaactacagaacggttgtcagccatcttgtagtcatgaaactgctccatgatatacagatcattgctagcatcagtagcaccgaatttagtattcagtgcatcccacaactccttagcgtcggtcatatgcatatacacctcgaccagacgatcgtcaagaacgctaagaatgcatcccacaaagagtggcttcctcgaattgcttctgctgatcagcagtaagaattccttcaggtttgccaatactcacccagaagcatttcatagccgtcagccacagagtgaccctgatctgccatctcttaaagtgcacaccggtgaatttatccggcctcagtgcatcggcaaaaccagccatagtaaaatcacagcgcctataataaggtttttggattgttgaaattataagcacataatgatttaatttattccataaataaatcatgacattgcagatgtaaactagattgaacgcatcattagatctacacatgtaaactaagcagtaaaacatgaacagataaaatatgcgcaacatgttgaacacataccgaggtggcggaaagaccggttgctcggcaggaactactcgcagttgcgagcgtcgacgaaggcgcgaagcacgcgagcgaagaggaAGacgagccgtcgcgaacgaacagggagcagtcgcgcgaagcgcttcccaaaaaccatattgctgccttctcccggtgcaggacatcgaaggcagaggttccggagacctgctctcccgattgccggtgcacgccggcgagcgggatggagtagtctacgagcgacggcgcagtacagagtaggaggcaaaccctagattgatttcgcgtgtgttgcgtgaaggcagcggctcggtttatatagagataaatcgcctgatcagggcgtccgcgtaaaccgaaccggataagtcgcacgtaacctatccggattccatgccgttttcacacaccagatttttcggaatgtttccaaaacaaaacaaatccgaatcccgcagcaaaacaaaactgcaaaaggaggctgcatctgcacaagggtgaggagccaattttgcggactattcgacgcgtacgtcgtgcacgtgcgccgcctgccctgccaagccaggccagcgagcgcgcacgtgtgtttcccctcttctctccaccacacatgctttaagtggctaggagggcatcctcccttttaaggaggtccccctctcctagaataagcaaggtggtactaaactccacatgcatgccatcccatgaggtgggcttttgtgattttccaaagaattaatcttcgaatgggccttagcccatctattaattccaacaagttcacgactcgacacctccaggctctatccctaacccgagtaacaaccaaaggaacccaccaaaccaggacatctcgagcgattcccacacggatctgcgagggctagcgaatctatcgacactacataaatcagagtaagtccaaagaagcactttgcggcggaggtgctccttggggatgccagagaccatgcttatctcgcctggcttgatcttgacgagggcgtcggacgctgccgcggagagcatccgcgcgggcgtgggagacgatgagaggagcgcccgccccagggaggggaggctccacaggagcggggcgtccatctcgtcggagccgtacgccgaccgatgatggcggcgcctgggagttcttggacaacctgaccaactgcaacaccttggctgagatattcctcaacggcaacatgttcgccgacgtgatgttgagctccgtcgtggttccatccgccattggccgattggcgacctcacgcagctactcaagctcgacctgagtggcaactc
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| CDS seq | atggagaacggcggcggcgacgcgtcggcggcggcgtggcggttcggggcggcgaacccggcgatggaggcggcgaggtcgcagagcatccgcgcgctggtgtaccgggtgtacgcctgcctcgacaggggcgacgcgcggtccgtggcgccgctcggacacggcgaccccgccgcgttcgcgtgcttccgcgcggcgccggcggccacgggcgccgtcgtcgccgccgccgcctccggcgcgcacaacagctacgcgccggccgccggaatcgcggaggcgtgcaggctcgggacgaaagaagtccaggcccaagttacatacatgggcccaagctaccaactcagccacaactcgctcttcggccacatcccgccatcgctggcgaacctcacgaagatcgtgcagctcgagttcgaccagaaccttctgggaaggcgtcggacgctgccgcggagagcatccgcgcgggcgtgggagacgatgagaggagcgcccgccccagggaggggaggctccacaggagcggggcgtccatctcgtcggagccgtacgccgaccgatgatggcggcgcctgggagttcttggacaacctgaccaactgcaacaccttggctgagatattcctcaacggcaacatgttcgccgacgtgatgttgagctccgtcgtggttccatccgccattggccgattggcgacctcacgcagctactcaagctcgacctga
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| Protein seq | MENGGGDASAAAWRFGAANPAMEAARSQSIRALVYRVYACLDRGDARSVAPLGHGDPAAFACFRAAPAATGAVVAAAASGAHNSYAPAAGIAEACRLGTKEVQAQVTYMGPSYQLSHNSLFGHIPPSLANLTKIVQLEFDQNLLGRRRTLPRRASARAWETMRGAPAPGRGGSTGAGRPSRRSRTPTDDGGAWEFLDNLTNCNTLAEIFLNGNMFADVMLSSVVVPSAIGRLATSRSYSSST |
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| Function | Tyrosine aminotransferase [UniProtKB/Swiss-Prot:Q9LVY1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_02g0013790 | OsGoSa_02g0013790.01 | Chr02 | 11789799 | 11799733 | + | NAM | ||
| CDS seq | atggagaacggcggcggcgacgcgtcggcggcggcgtggcggttcggggcggcgaacccggcgatggaggcggcgaggtcgcagagcatccgcgcgctggtgtaccgggtgtacgcctgcctcgacaggggcgacgcgcggtccgtggcgccgctcggacacggcgaccccgccgcgttcgcgtgcttccgcgcggcgccggcggccacgggcgccgtcgtcgccgccgccgcctccggcgcgcacaacagctacgcgccggccgccggaatcgcggaggcgtgcaggctcgggacgaaagaagtccaggcccaagttacatacatgggcccaagctaccaactcagccacaactcgctcttcggccacatcccgccatcgctggcgaacctcacgaagatcgtgcagctcgagttcgaccagaaccttctgggaaggcgtcggacgctgccgcggagagcatccgcgcgggcgtgggagacgatgagaggagcgcccgccccagggaggggaggctccacaggagcggggcgtccatctcgtcggagccgtacgccgaccgatgatggcggcgcctgggagttcttggacaacctgaccaactgcaacaccttggctgagatattcctcaacggcaacatgttcgccgacgtgatgttgagctccgtcgtggttccatccgccattggccgattggcgacctcacgcagctactcaagctcgacctga
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| Protein seq | MENGGGDASAAAWRFGAANPAMEAARSQSIRALVYRVYACLDRGDARSVAPLGHGDPAAFACFRAAPAATGAVVAAAASGAHNSYAPAAGIAEACRLGTKEVQAQVTYMGPSYQLSHNSLFGHIPPSLANLTKIVQLEFDQNLLGRRRTLPRRASARAWETMRGAPAPGRGGSTGAGRPSRRSRTPTDDGGAWEFLDNLTNCNTLAEIFLNGNMFADVMLSSVVVPSAIGRLATSRSYSSST
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0302450 | SBH | 0.261989 | 0.079323 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g19924 | SBH | 0.872889 | 1.640608 | 1.159116 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0302450 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0013550 | SBH | 0.236141 | 7.043384 | 4.235290 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0013730 | SBH | 0.434098 | 0.0 | 1.514101 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0013560 | SBH | 0.668827 | 0.000000 | 4.520222 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0013400 | RBH | 0.002078 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0013400 | SBH | 3.294039 | 2.019352 | 4.403326 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0185800 | SBH | 2.626099 | 1.5642585 | 9.4859565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0013180 | SBH | 0.271081 | 0.0 | 1.447778 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0197700 | SBH | 4.658357 | 8.523863 | 6.628866 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0013730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0013290 | SBH | 0.741645 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0013810 | SBH | 4.073175 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0013640 | SBH | 0.782877 | 0.0 | 1.208062 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0013440 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G013770 | SBH | 0.137529 | 0.780199 | 2.818570 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0013530 | SBH | 0.183147 | 0.000000 | 6.385164 |
