Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0227100 | OGI:11019820 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:6657129-6658984 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTTGGAATCAAACATACAAAACAGCTTAGAAGTGAGCTGTCAAAAAACAACAATATTCGAGCAATTTTAAATATGAGCTACCATGACCTATCAGGAGAACTCAGAAACTGCTTTTTGTATTGCAGTTTATTCTCAGAGGACTACCCGATCTCCCGTGAGAGCCTTGTGCGACTGTGGATAGCAGAAGGATTTGTCTTGAGCAAAGAGAACAACACACCAGAGGTGGTAGCAGAGGGGAATCTTATGGAACTGATATACCGGAATATGCTTCAAATTAAAGAGAATGATGAGCTAGGCAGGGTGACTACCTGCACAATGCATGATATTGTGCGGGACCTGGCCCTTTCTATTGCTAAAGAGGAGAAATTTGGTTCTGCAAATGATTTCGGCACAATGGTACAGATTAATAAGGATGTTCGTCGTCTATCATCTTATGAATGGAATGATAGTGTTGCTGCCACTGCACCAAAATTTAAACTTCCACGTCTTCGAACACTAGTATCGCTTGGAGCAATTTCATTTCCCACTTATATGTTGGACTCAATTTTGTCAGAATCAAGTTACCTTACTGTTCTTGAGCTCCAAGATTCAGAAATCACTCAATTGCCAAAATCTATAGGCAATATGTTTAATCTGCGTTACATTGGCTTGCGTCGCACAAAGGTCAAGTCACTCCCTGACTCTATTGAAAAGTTGTCTAATCTCTACACTCTGGACATCAAGCAAACCAAAATAGAGAAGCTACCACGTGGAATCACTAAGATCAAGAAGCTAAGGCACCTGCTAGCTGATAGATATGATGATGAGAAACATTCAGAGTTCCGGTACTTCAAAGGCGTGCAAGCACCAAAAGATCTGTCTAACTTGGAAGAACTTCAGACTCTTGAGACCGTGGAAGCTAGCAAGGACTTGGCCGTGCAACTGAAGAAACTGATGCAACTAAGAAGTGTTTGGATTGACAACATAAGTTCTGCTGATTGTGGAAATATTTTTGCTACATTATCAACTATGCCGCTTCTTTCTAGCTTGCTTCTTTCTGCAAGAGATGAGAATGAACCACTTTGCTTTGAGGCTCTCCAGCCCATGTCCAAAGAACTCCACAGGTCAATTATCAGAGGGCAATGGGCCAAGGGCACATTGGACTACCCGATATTTCTTAGCCACACTACACATCTCAAGTACTTAGCTCTAAGTTGGTGTAATCTTGGGGAAGATCCACTGGGGATGCTCGCATCACACTTGTCAAACCTCACTTATCTAAGACTGAACAACATGCACAGTTCGAAAACTTTGGTTCTTGATGCAGAGGCGTTCCCCCACCTGAAGACTCTTGTGTTAATGCACATGCCTGATGTCAACCAGATAAACATCACGGATGGCGCCCTTCCATGCATTGAAGGTTTATACATTGTATCATTGTGGAAGCTGGATAAAGTCCCTCAAGGCATTGAATCCCTTGCCTCCCTGAAGAAGCTCTGGTTGAAGGACCTGCACAAAGACTTCAAGACTCAATGGAAAGGTGACGGGATGCACCAGAAGATGCTGCATGTTGCAGAGGTCCGTATATAGATGTTGCAGATTGGCTCTTTCTACATTAGTATTCTTTCTTAAAGTCTGTCTGCGTGCAAGTACATCACACATTTAGTTCTTTCCAGTAATTTGTCAGATTTGCATATGTATGGTCGGTATTGTTTTCTTTGGTAACATGTCATGCTTGATTTTTTTTCCTAAAGGAGGCCCCCATAATTTATGTGTTGTTTCAATTGCCTTCAGATTTATTTCATGTAAGAATCATGTCCCATTTTTATCAACGGCATCTTCCTGTGGTGTTATCAACGTTGGAACCTCCTTGT
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| CDS seq | ATGTTTGGAATCAAACATACAAAACAGCTTAGAAGTGAGCTGTCAAAAAACAACAATATTCGAGCAATTTTAAATATGAGCTACCATGACCTATCAGGAGAACTCAGAAACTGCTTTTTGTATTGCAGTTTATTCTCAGAGGACTACCCGATCTCCCGTGAGAGCCTTGTGCGACTGTGGATAGCAGAAGGATTTGTCTTGAGCAAAGAGAACAACACACCAGAGGTGGTAGCAGAGGGGAATCTTATGGAACTGATATACCGGAATATGCTTCAAATTAAAGAGAATGATGAGCTAGGCAGGGTGACTACCTGCACAATGCATGATATTGTGCGGGACCTGGCCCTTTCTATTGCTAAAGAGGAGAAATTTGGTTCTGCAAATGATTTCGGCACAATGGTACAGATTAATAAGGATGTTCGTCGTCTATCATCTTATGAATGGAATGATAGTGTTGCTGCCACTGCACCAAAATTTAAACTTCCACGTCTTCGAACACTAGTATCGCTTGGAGCAATTTCATTTCCCACTTATATGTTGGACTCAATTTTGTCAGAATCAAGTTACCTTACTGTTCTTGAGCTCCAAGATTCAGAAATCACTCAATTGCCAAAATCTATAGGCAATATGTTTAATCTGCGTTACATTGGCTTGCGTCGCACAAAGGTCAAGTCACTCCCTGACTCTATTGAAAAGTTGTCTAATCTCTACACTCTGGACATCAAGCAAACCAAAATAGAGAAGCTACCACGTGGAATCACTAAGATCAAGAAGCTAAGGCACCTGCTAGCTGATAGATATGATGATGAGAAACATTCAGAGTTCCGGTACTTCAAAGGCGTGCAAGCACCAAAAGATCTGTCTAACTTGGAAGAACTTCAGACTCTTGAGACCGTGGAAGCTAGCAAGGACTTGGCCGTGCAACTGAAGAAACTGATGCAACTAAGAAGTGTTTGGATTGACAACATAAGTTCTGCTGATTGTGGAAATATTTTTGCTACATTATCAACTATGCCGCTTCTTTCTAGCTTGCTTCTTTCTGCAAGAGATGAGAATGAACCACTTTGCTTTGAGGCTCTCCAGCCCATGTCCAAAGAACTCCACAGGTCAATTATCAGAGGGCAATGGGCCAAGGGCACATTGGACTACCCGATATTTCTTAGCCACACTACACATCTCAAGTACTTAGCTCTAAGTTGGTGTAATCTTGGGGAAGATCCACTGGGGATGCTCGCATCACACTTGTCAAACCTCACTTATCTAAGACTGAACAACATGCACAGTTCGAAAACTTTGGTTCTTGATGCAGAGGCGTTCCCCCACCTGAAGACTCTTGTGTTAATGCACATGCCTGATGTCAACCAGATAAACATCACGGATGGCGCCCTTCCATGCATTGAAGGTTTATACATTGTATCATTGTGGAAGCTGGATAAAGTCCCTCAAGGCATTGAATCCCTTGCCTCCCTGAAGAAGCTCTGGTTGAAGGACCTGCACAAAGACTTCAAGACTCAATGGAAAGGTGACGGGATGCACCAGAAGATGCTGCATGTTGCAGAGGTCCGTATATAG
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| Protein seq | MFGIKHTKQLRSELSKNNNIRAILNMSYHDLSGELRNCFLYCSLFSEDYPISRESLVRLWIAEGFVLSKENNTPEVVAEGNLMELIYRNMLQIKENDELGRVTTCTMHDIVRDLALSIAKEEKFGSANDFGTMVQINKDVRRLSSYEWNDSVAATAPKFKLPRLRTLVSLGAISFPTYMLDSILSESSYLTVLELQDSEITQLPKSIGNMFNLRYIGLRRTKVKSLPDSIEKLSNLYTLDIKQTKIEKLPRGITKIKKLRHLLADRYDDEKHSEFRYFKGVQAPKDLSNLEELQTLETVEASKDLAVQLKKLMQLRSVWIDNISSADCGNIFATLSTMPLLSSLLLSARDENEPLCFEALQPMSKELHRSIIRGQWAKGTLDYPIFLSHTTHLKYLALSWCNLGEDPLGMLASHLSNLTYLRLNNMHSSKTLVLDAEAFPHLKTLVLMHMPDVNQINITDGALPCIEGLYIVSLWKLDKVPQGIESLASLKKLWLKDLHKDFKTQWKGDGMHQKMLHVAEVRI |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0227100 | OsNip_11t0227100-00 | Chr11 | 6657129 | 6658984 | + | RAP2018-11-26 | ||
| CDS seq | ATGTTTGGAATCAAACATACAAAACAGCTTAGAAGTGAGCTGTCAAAAAACAACAATATTCGAGCAATTTTAAATATGAGCTACCATGACCTATCAGGAGAACTCAGAAACTGCTTTTTGTATTGCAGTTTATTCTCAGAGGACTACCCGATCTCCCGTGAGAGCCTTGTGCGACTGTGGATAGCAGAAGGATTTGTCTTGAGCAAAGAGAACAACACACCAGAGGTGGTAGCAGAGGGGAATCTTATGGAACTGATATACCGGAATATGCTTCAAATTAAAGAGAATGATGAGCTAGGCAGGGTGACTACCTGCACAATGCATGATATTGTGCGGGACCTGGCCCTTTCTATTGCTAAAGAGGAGAAATTTGGTTCTGCAAATGATTTCGGCACAATGGTACAGATTAATAAGGATGTTCGTCGTCTATCATCTTATGAATGGAATGATAGTGTTGCTGCCACTGCACCAAAATTTAAACTTCCACGTCTTCGAACACTAGTATCGCTTGGAGCAATTTCATTTCCCACTTATATGTTGGACTCAATTTTGTCAGAATCAAGTTACCTTACTGTTCTTGAGCTCCAAGATTCAGAAATCACTCAATTGCCAAAATCTATAGGCAATATGTTTAATCTGCGTTACATTGGCTTGCGTCGCACAAAGGTCAAGTCACTCCCTGACTCTATTGAAAAGTTGTCTAATCTCTACACTCTGGACATCAAGCAAACCAAAATAGAGAAGCTACCACGTGGAATCACTAAGATCAAGAAGCTAAGGCACCTGCTAGCTGATAGATATGATGATGAGAAACATTCAGAGTTCCGGTACTTCAAAGGCGTGCAAGCACCAAAAGATCTGTCTAACTTGGAAGAACTTCAGACTCTTGAGACCGTGGAAGCTAGCAAGGACTTGGCCGTGCAACTGAAGAAACTGATGCAACTAAGAAGTGTTTGGATTGACAACATAAGTTCTGCTGATTGTGGAAATATTTTTGCTACATTATCAACTATGCCGCTTCTTTCTAGCTTGCTTCTTTCTGCAAGAGATGAGAATGAACCACTTTGCTTTGAGGCTCTCCAGCCCATGTCCAAAGAACTCCACAGGTCAATTATCAGAGGGCAATGGGCCAAGGGCACATTGGACTACCCGATATTTCTTAGCCACACTACACATCTCAAGTACTTAGCTCTAAGTTGGTGTAATCTTGGGGAAGATCCACTGGGGATGCTCGCATCACACTTGTCAAACCTCACTTATCTAAGACTGAACAACATGCACAGTTCGAAAACTTTGGTTCTTGATGCAGAGGCGTTCCCCCACCTGAAGACTCTTGTGTTAATGCACATGCCTGATGTCAACCAGATAAACATCACGGATGGCGCCCTTCCATGCATTGAAGGTTTATACATTGTATCATTGTGGAAGCTGGATAAAGTCCCTCAAGGCATTGAATCCCTTGCCTCCCTGAAGAAGCTCTGGTTGAAGGACCTGCACAAAGACTTCAAGACTCAATGGAAAGGTGACGGGATGCACCAGAAGATGCTGCATGTTGCAGAGGTCCGTATATAG
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| Protein seq | MFGIKHTKQLRSELSKNNNIRAILNMSYHDLSGELRNCFLYCSLFSEDYPISRESLVRLWIAEGFVLSKENNTPEVVAEGNLMELIYRNMLQIKENDELGRVTTCTMHDIVRDLALSIAKEEKFGSANDFGTMVQINKDVRRLSSYEWNDSVAATAPKFKLPRLRTLVSLGAISFPTYMLDSILSESSYLTVLELQDSEITQLPKSIGNMFNLRYIGLRRTKVKSLPDSIEKLSNLYTLDIKQTKIEKLPRGITKIKKLRHLLADRYDDEKHSEFRYFKGVQAPKDLSNLEELQTLETVEASKDLAVQLKKLMQLRSVWIDNISSADCGNIFATLSTMPLLSSLLLSARDENEPLCFEALQPMSKELHRSIIRGQWAKGTLDYPIFLSHTTHLKYLALSWCNLGEDPLGMLASHLSNLTYLRLNNMHSSKTLVLDAEAFPHLKTLVLMHMPDVNQINITDGALPCIEGLYIVSLWKLDKVPQGIESLASLKKLWLKDLHKDFKTQWKGDGMHQKMLHVAEVRI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.065772 | 0.336805 | 0.643014 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0229700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11990 | RBH | 0.037362 | 0.095143 | 0.065533 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0227100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008080 | SBH | 0.418868 | 14.766461 | 1.036938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008040 | SBH | 0.198904 | 6.296239 | 0.434316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007940 | RBH | 0.098951 | 3.491027 | 1.403182 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007800 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007860 | SBH | 1.050933 | 5.437952 | 4.828925 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0106000 | RBH | 1.373814 | 6.078619 | 1.017997 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007900 | SBH | 0.246380 | 0.692657 | 0.378460 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0111500 | RBH | 5.456746 | 174.322876 | 2.407701 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007980 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008030 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007880 | RBH | 1.926036 | 9.854136 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007880 | SBH | 0.437642 | 0.0 | 0.310380 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007980 | SBH | 0.180296 | 1.474919 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008000 | RBH | 0.370055 | 4.354017 | 0.451209 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007810 | SBH | 1.236004 | 20.805704 | 1.013925 |
