Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0007880 | OGI:11019820 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:6995857-6998791 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaaataaatctgaaggcaaatggggcaacacagaaattacaggagattcaatgatctgggaatgtttgtataacaatttaaagcatgacatgtaatcaaagagaactttactgaccatatgtatgcaaatccaacaaattactggaaagaaccaaatctgtgatgtacttgcacatagggaaactttatgcaacatctatattcggacctctgcaacatgcatcatcttctggtgcatcccattaccattccattgaattttgaagtctttgtgcaggctcgtcagccagagcttcttcagggagctgagggactcaatgccttgaggaaccttattcagattcggcagggacacaatgtacaagccttcaatgcatggaagggcgccatccatgatctttatctggttgacgtcaggcatcttctgcaatacaagcgtctttaggtaggggaacgcctctgcatcaagaactaaagtttctgcactgtgcatgttgttcagttttaggtaagtcaggtttgacaagtgtgatgcgagcatccccagtggatcttcaccaagatgacaccaacttagagctaaatatttgagatatttactatggctacgaaatatcgggtagtctagtgtgcccttagcacattgccctctgataattaacctgtggagttctgtagacctgggcttgagtgcctcgaagcaaagtggctcattctcatcctttgcagaaagaagcaagctggaaagaagtggcatatttgacagtgccgcaaaaatacttgcacaatcagtagaacttatgttgtcaatccacaaacttcgtagttgcatcagtgtcttcaactgctcggccaaacctttgctagcttccacggtctcaagagtctgtagttcatttaggttggatagatctttaggtgcttgcattcctatgaaataccggaactccgactgcttttcatcagcatatctatcagctaacaggtgccttagcttctttattttagtgattcctcgtggtagcttctctatttttgtttgcttaatgtctagagtgtagaggttcgacaacttctcaacagaatcagggagtgacttgaccttcgtgcgccgtaaaccaatgtaacgtagattaaacaaattccctattgatgctggcacttgagtgatttctgaatcttgaagctcgagaacagtaaggtagcttgagtgagacaaaactgagaacaacatatcaatggaagatgaaattgcttcaagtgatactatggttcgaagacgtagaagtttgagatttggtgcagtactatctttccatcggtaagttgacagacgacgaacatccttatcaatctctaccattgtgccaaaatcattagcagagccaaacttctcctctttagcagcagaaagggccaggtctcgcataatgtcatgcattccacaagttttcaccctgccgagctcatcatactctttaacttgaagcatattcctgtatatcaattccatgagatttccctcagctactgcctctggtgtgttgttctctttcctgaggacaaagccttctgcaatccacagatgcacaaggatctcacgggagagcaggtagtcttccgggaataggctgcagtacaaaaagcagtttcttaggtctcctgacaggtcatggtagctcatatttaaaattgcttggacatgattgttctttgacaactcgcttctaagttgattgtatgcttgattccaaacgtaatgtgaccgtgaccttgaagacaagaggcagcctattgacacaattgctagtggaaggccctgacacctctcaactatagatttggcaactttcacgagttccgtgggacactcatggtccttaatgttataaaatgcccttctgcagaatagatcaaagccatgaatatcactcaatggctggagatcaaggtgacatgttgaggaagcaagagctgccacatgattcttccgtgttgtgattattacgcgacttccttggtcattctggaatgcatcacgtatttgaaagtatgcttcttgATCCCAGACATCATCAAGTACGATCAAGCATTTTCTAACTTTGAGCATTCGCTTTATTTCCTCTTTCAAATCATACACATCCATTTTGTCAATGTTACTTGACAGTGGTGGTTCTGTGTAACCAACTTTCCAAAGCAGCTTCCTTAATAGAGCATCCACAGTGTAGGTTTGAGACACAACCATCCATGCATGAGCAGAGAAGTTGATCTTTTCACGTTCATACACATTTGTGACCAGGGTGGTTTTCCCCAGTCCGCCCATACCTGACACTGTTATCACCTTACTGTCCAGCTCGTCGGTGTACAACCATTCAGTCAGCAGTCTCCTGTTGTCTTCAATCCCCACAAGATCTTCATCTTTCACAAGTTCTGGGAAGCTGTCCCGGGACCTCTGTCTTTCCATCTCAGTGAGCgggtcagaaacaagctgggatggatgcaaccactgatccttgagttctataacttgtttgatttccttctctatcttgactacctcattagcaatttcagtgaaaacaataacataatgtgatgctttgatgaagtattttttaaggaaccattcttccgccatttgcacagagtaatacgagtatttgtccatgacatcctcaacacggtaggccaccttcctcacctccccaatccaacacttgacgacttcatcagtgaggtatgtcgtgcctatctgcaatataacgttgttcatggttgtcaattgcttcctcatttgctcaatcttctcatccagatccttcagattattaaccttttcagacagtttggcaatcaattctttagcgatttcatttgctaaagcatcaccgatcttcgttagagcaaggaggactgcctctgccatttgtgct
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| CDS seq | atggcagaggcagtcctccttgctctaacgaagatcggtgatgctttagcaaatgaaatcgctaaagaattgattgccaaactgtctgaaaaggttaataatctgaaggatctggatgagaagattgagcaaatgaggaagcaattgacaaccatgaacaacgttatattgcagataggcacgacatacctcactgatgaagtcgtcaagtgttggattggggaggtgaggaaggtggcctaccgtgttgaggatgtcatggacaaatactcgtattactctgtgcaaatggcggaagaatggttccttaaaaaatacttcatcaaagcatcacattatgttattgttttcactgaaattgctaatgaggtagtcaagatagagaaggaaatcaaacaagttatagaactcaaggatcagtggttgcatccatcccagcttgtttctgacccGCTCACTGAGATGGAAAGACAGAGGTCCCGGGACAGCTTCCCAGAACTTGTGAAAGATGAAGATCTTGTGGGGATTGAAGACAACAGGAGACTGCTGACTGAATGGTTGTACACCGACGAGCTGGACAGTAAGGTGATAACAGTGTCAGGTATGGGCGGACTGGGGAAAACCACCCTGGTCACAAATGTGTATGAACGTGAAAAGATCAACTTCTCTGCTCATGCATGGATGGTTGTGTCTCAAACCTACACTGTGGATGCTCTATTAAGGAAGCTGCTTTGGAAAGTTGGTTACACAGAACCACCACTGTCAAGTAACATTGACAAAATGGATGTGTATGATTTGAAAGAGGAAATAAAGCGAATGCTCAAAGTTAGAAAATGCTTGATCGTACTTGATGATGTCTGGGATcaagaagcatactttcaaatacgtgatgcattccagaatgaccaaggaagtcgcgtaataatcacaacacggaagaatcatgtggcagctcttgcttcctcaacatgtcaccttgatctccagccattgagtgatattcatggctttgatctattctgcagaagggcattttataacattaaggaccatgagtgtcccacggaactcgtgaaagttgccaaatctatagttgagaggtgtcagggccttccactagcaattgtgtcaataggctgcctcttgtcttcaaggtcacggtcacattacgtttggaatcaagcatacaatcaacttagaagcgagttgtcaaagaacaatcatgtccaagcaattttaaatatgagctaccatgacctgtcaggagacctaagaaactgctttttgtactgcagcctattcccggaagactacctgctctcccgtgagatccttgtgcatctgtggattgcagaaggctttgtcctcaggaaagagaacaacacaccagaggcagtagctgagggaaatctcatggaattgatatacaggaatatgcttcaagttaaagagtatgatgagctcggcagggtgaaaacttgtggaatgcatgacattatgcgagacctggccctttctgctgctaaagaggagaagtttggctctgctaatgattttggcacaatggtagagattgataaggatgttcgtcgtctgtcaacttaccgatggaaagatagtactgcaccaaatctcaaacttctacgtcttcgaaccatagtatcacttgaagcaatttcatcttccattgatatgttgttctcagttttgtctcactcaagctaccttactgttctcgagcttcaagattcagaaatcactcaagtgccagcatcaatagggaatttgtttaatctacgttacattggtttacggcgcacgaaggtcaagtcactccctgattctgttgagaagttgtcgaacctctacactctagacattaagcaaacaaaaatagagaagctaccacgaggaatcactaaaataaagaagctaaggcacctgttagctgatagatatgctgatgaaaagcagtcggagttccggtatttcataggaatgcaagcacctaaagatctatccaacctaaatgaactacagactcttgagaccgtggaagctagcaaaggtttggccgagcagttgaagacactgatgcaactacgaagtttgtggattgacaacataagttctactgattgtgcaagtatttttgcggcactgtcaaatatgccacttctttccagcttgcttctttctgcaaaggatgagaatgagccactttgcttcgaggcactcaagcccaggtctacagaactccacaggttaattatcagagggcaatgtgctaagggcacactagactacccgatatttcgtagccatagtaaatatctcaaatatttagctctaagttggtgtcatcttggtgaagatccactggggatgctcgcatcacacttgtcaaacctgacttacctaaaactgaacaacatgcacagtgcagaaactttagttcttgatgcagaggcgttcccctacctaaagacgcttgtattgcagaagatgcctgacgtcaaccagataaagatcatggatggcgcccttccatgcattgaaggcttgtacattgtgtccctgccgaatctgaataaggttcctcaaggcattgagtccctcagctccctgaagaagctctggctgacgagcctgcacaaagacttcaaaattcaatggaatggtaatgggatgcaccagaagatgatgcatgttgcagaggtccgaatatag
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| Protein seq | MAEAVLLALTKIGDALANEIAKELIAKLSEKVNNLKDLDEKIEQMRKQLTTMNNVILQIGTTYLTDEVVKCWIGEVRKVAYRVEDVMDKYSYYSVQMAEEWFLKKYFIKASHYVIVFTEIANEVVKIEKEIKQVIELKDQWLHPSQLVSDPLTEMERQRSRDSFPELVKDEDLVGIEDNRRLLTEWLYTDELDSKVITVSGMGGLGKTTLVTNVYEREKINFSAHAWMVVSQTYTVDALLRKLLWKVGYTEPPLSSNIDKMDVYDLKEEIKRMLKVRKCLIVLDDVWDQEAYFQIRDAFQNDQGSRVIITTRKNHVAALASSTCHLDLQPLSDIHGFDLFCRRAFYNIKDHECPTELVKVAKSIVERCQGLPLAIVSIGCLLSSRSRSHYVWNQAYNQLRSELSKNNHVQAILNMSYHDLSGDLRNCFLYCSLFPEDYLLSREILVHLWIAEGFVLRKENNTPEAVAEGNLMELIYRNMLQVKEYDELGRVKTCGMHDIMRDLALSAAKEEKFGSANDFGTMVEIDKDVRRLSTYRWKDSTAPNLKLLRLRTIVSLEAISSSIDMLFSVLSHSSYLTVLELQDSEITQVPASIGNLFNLRYIGLRRTKVKSLPDSVEKLSNLYTLDIKQTKIEKLPRGITKIKKLRHLLADRYADEKQSEFRYFIGMQAPKDLSNLNELQTLETVEASKGLAEQLKTLMQLRSLWIDNISSTDCASIFAALSNMPLLSSLLLSAKDENEPLCFEALKPRSTELHRLIIRGQCAKGTLDYPIFRSHSKYLKYLALSWCHLGEDPLGMLASHLSNLTYLKLNNMHSAETLVLDAEAFPYLKTLVLQKMPDVNQIKIMDGALPCIEGLYIVSLPNLNKVPQGIESLSSLKKLWLTSLHKDFKIQWNGNGMHQKMMHVAEVRI |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0007880 | OsLiXu_11g0007880.01 | Chr11 | 6995857 | 6998791 | - | NAM | ||
| CDS seq | atggcagaggcagtcctccttgctctaacgaagatcggtgatgctttagcaaatgaaatcgctaaagaattgattgccaaactgtctgaaaaggttaataatctgaaggatctggatgagaagattgagcaaatgaggaagcaattgacaaccatgaacaacgttatattgcagataggcacgacatacctcactgatgaagtcgtcaagtgttggattggggaggtgaggaaggtggcctaccgtgttgaggatgtcatggacaaatactcgtattactctgtgcaaatggcggaagaatggttccttaaaaaatacttcatcaaagcatcacattatgttattgttttcactgaaattgctaatgaggtagtcaagatagagaaggaaatcaaacaagttatagaactcaaggatcagtggttgcatccatcccagcttgtttctgacccGCTCACTGAGATGGAAAGACAGAGGTCCCGGGACAGCTTCCCAGAACTTGTGAAAGATGAAGATCTTGTGGGGATTGAAGACAACAGGAGACTGCTGACTGAATGGTTGTACACCGACGAGCTGGACAGTAAGGTGATAACAGTGTCAGGTATGGGCGGACTGGGGAAAACCACCCTGGTCACAAATGTGTATGAACGTGAAAAGATCAACTTCTCTGCTCATGCATGGATGGTTGTGTCTCAAACCTACACTGTGGATGCTCTATTAAGGAAGCTGCTTTGGAAAGTTGGTTACACAGAACCACCACTGTCAAGTAACATTGACAAAATGGATGTGTATGATTTGAAAGAGGAAATAAAGCGAATGCTCAAAGTTAGAAAATGCTTGATCGTACTTGATGATGTCTGGGATcaagaagcatactttcaaatacgtgatgcattccagaatgaccaaggaagtcgcgtaataatcacaacacggaagaatcatgtggcagctcttgcttcctcaacatgtcaccttgatctccagccattgagtgatattcatggctttgatctattctgcagaagggcattttataacattaaggaccatgagtgtcccacggaactcgtgaaagttgccaaatctatagttgagaggtgtcagggccttccactagcaattgtgtcaataggctgcctcttgtcttcaaggtcacggtcacattacgtttggaatcaagcatacaatcaacttagaagcgagttgtcaaagaacaatcatgtccaagcaattttaaatatgagctaccatgacctgtcaggagacctaagaaactgctttttgtactgcagcctattcccggaagactacctgctctcccgtgagatccttgtgcatctgtggattgcagaaggctttgtcctcaggaaagagaacaacacaccagaggcagtagctgagggaaatctcatggaattgatatacaggaatatgcttcaagttaaagagtatgatgagctcggcagggtgaaaacttgtggaatgcatgacattatgcgagacctggccctttctgctgctaaagaggagaagtttggctctgctaatgattttggcacaatggtagagattgataaggatgttcgtcgtctgtcaacttaccgatggaaagatagtactgcaccaaatctcaaacttctacgtcttcgaaccatagtatcacttgaagcaatttcatcttccattgatatgttgttctcagttttgtctcactcaagctaccttactgttctcgagcttcaagattcagaaatcactcaagtgccagcatcaatagggaatttgtttaatctacgttacattggtttacggcgcacgaaggtcaagtcactccctgattctgttgagaagttgtcgaacctctacactctagacattaagcaaacaaaaatagagaagctaccacgaggaatcactaaaataaagaagctaaggcacctgttagctgatagatatgctgatgaaaagcagtcggagttccggtatttcataggaatgcaagcacctaaagatctatccaacctaaatgaactacagactcttgagaccgtggaagctagcaaaggtttggccgagcagttgaagacactgatgcaactacgaagtttgtggattgacaacataagttctactgattgtgcaagtatttttgcggcactgtcaaatatgccacttctttccagcttgcttctttctgcaaaggatgagaatgagccactttgcttcgaggcactcaagcccaggtctacagaactccacaggttaattatcagagggcaatgtgctaagggcacactagactacccgatatttcgtagccatagtaaatatctcaaatatttagctctaagttggtgtcatcttggtgaagatccactggggatgctcgcatcacacttgtcaaacctgacttacctaaaactgaacaacatgcacagtgcagaaactttagttcttgatgcagaggcgttcccctacctaaagacgcttgtattgcagaagatgcctgacgtcaaccagataaagatcatggatggcgcccttccatgcattgaaggcttgtacattgtgtccctgccgaatctgaataaggttcctcaaggcattgagtccctcagctccctgaagaagctctggctgacgagcctgcacaaagacttcaaaattcaatggaatggtaatgggatgcaccagaagatgatgcatgttgcagaggtccgaatatag
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| Protein seq | MAEAVLLALTKIGDALANEIAKELIAKLSEKVNNLKDLDEKIEQMRKQLTTMNNVILQIGTTYLTDEVVKCWIGEVRKVAYRVEDVMDKYSYYSVQMAEEWFLKKYFIKASHYVIVFTEIANEVVKIEKEIKQVIELKDQWLHPSQLVSDPLTEMERQRSRDSFPELVKDEDLVGIEDNRRLLTEWLYTDELDSKVITVSGMGGLGKTTLVTNVYEREKINFSAHAWMVVSQTYTVDALLRKLLWKVGYTEPPLSSNIDKMDVYDLKEEIKRMLKVRKCLIVLDDVWDQEAYFQIRDAFQNDQGSRVIITTRKNHVAALASSTCHLDLQPLSDIHGFDLFCRRAFYNIKDHECPTELVKVAKSIVERCQGLPLAIVSIGCLLSSRSRSHYVWNQAYNQLRSELSKNNHVQAILNMSYHDLSGDLRNCFLYCSLFPEDYLLSREILVHLWIAEGFVLRKENNTPEAVAEGNLMELIYRNMLQVKEYDELGRVKTCGMHDIMRDLALSAAKEEKFGSANDFGTMVEIDKDVRRLSTYRWKDSTAPNLKLLRLRTIVSLEAISSSIDMLFSVLSHSSYLTVLELQDSEITQVPASIGNLFNLRYIGLRRTKVKSLPDSVEKLSNLYTLDIKQTKIEKLPRGITKIKKLRHLLADRYADEKQSEFRYFIGMQAPKDLSNLNELQTLETVEASKGLAEQLKTLMQLRSLWIDNISSTDCASIFAALSNMPLLSSLLLSAKDENEPLCFEALKPRSTELHRLIIRGQCAKGTLDYPIFRSHSKYLKYLALSWCHLGEDPLGMLASHLSNLTYLKLNNMHSAETLVLDAEAFPYLKTLVLQKMPDVNQIKIMDGALPCIEGLYIVSLPNLNKVPQGIESLSSLKKLWLTSLHKDFKIQWNGNGMHQKMMHVAEVRI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.437642 | 0.0 | 0.310380 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0226933 | RBH | 3.265536 | 4.079123 | 3.423502 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11960 | RBH | 2.288282 | 2.649541 | 0.808534 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0226933 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008080 | RBH | 0.418868 | 14.766461 | 1.036938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008040 | RBH | 0.198904 | 6.296239 | 0.434316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007910 | RBH | 2.060827 | 18.695328 | 1.356757 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007770 | RBH | 0.137865 | 0.304908 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007860 | RBH | 1.050933 | 5.437952 | 4.828925 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0105900 | RBH | 0.109065 | 0.603869 | 0.012481 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007900 | RBH | 0.246380 | 0.692657 | 0.378460 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0111500 | SBH | 5.456746 | 174.322876 | 2.407701 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007950 | RBH | 0.0 | 0.257585 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008000 | RBH | 0.160174 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007850 | RBH | 0.0 | 29.095007 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065060 | RBH | 0.000000 | 0.0 | 0.263851 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007980 | RBH | 0.180296 | 1.474919 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008000 | RBH | 0.370055 | 4.354017 | 0.451209 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007810 | RBH | 1.236004 | 20.805704 | 1.013925 |
