Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_08g0197500 OGI:08014880 | 15/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr08:5638269-5643221
Gene Symbol OsFbox425, Os_F0168, Os_F0662
DNA seq

GGAGTTTTTCCCCCTTTCTTCTCACTCCAACTGATGAGTGGACGAAGCAGACGACTCTCTCCCTCATCGGAGACCTCATCTGCTCGCGGGAGTCGGATCTGTTGTGCTGGAGTCGAAGAGCTCGCCAGCGGTCAAATCCATGGTGCGGATTCAGGGGCAGCGTGAGCAAGCCAGGCTAGCTCCCTGGTAGGCCCCCGTCCCTCTCGCCTCACTCTCTCTTCCTCCGTCCTAGCCTAAATTGGGCGCAAGTGATGCGGATTGAGTGCAGCCGCACCCAACGGGCCTTTCACCTCATTTGAAGAAAACATAGCGATTTTTATCTTGGTTGGATCAGTTCCTATTTATTTTTGATTCCGTGAGATTATATTTGATTACGCATCTTCTATGACTTGATTTCTTTTAATCTTATTCTTGGATTCGATTTCAGTTACCATAAACATGTTTCTAGGTCCGATTTATTTACAAGATAGGATTATTTTGAGGGAATTTGGGTTGCATCTGTTTGTTTTTGTGTTCATGCTTTCAAGTGACTTTTGAGGTGAGACGGCATTGAGACACGTGCGGAGCATTTGAGACAGGTGTGAAGGGCAACAACGTGCCAACGTGAGGGAAGCGGAGGCTCACACCGTGACGGAGGAAAGCGGACTATCACGGACGAAGGCGTAATGTGAAGATCAGAAACATATGAATTTTTTAATTAGTTAAGACTAGAAAAAAATACCCGTGCATTGCAACGGGTGAAGGTTATTTTATTCTTATTATATTATACGGTTTAGTTAAGATGAAATTCACTTTGGGAATTCGCTTTAATATATAACTTTTTAGAAAATCGTGAACTACAATTAAGAGTCCGATCGTCTCAAGTTAGCGTGCGAGTTTTTTTTATAAGAGATTTCTTATACGACTCCTTTTGTATTTTCAAAAGCGAACGAACTTAAAAACCGACTCATACACAGATGACGTACCAAAGTACTAGCAAAAAATATTTTTAATTTTTATAATAGTAGAGATTAGATAAAGATATTTGTAAATTTCTACTCTACGGGCCTATTTGGTTCTCTACCCTACCTATTTATTGGTAGTGCCAAAATCTAGGCAAATTTTGGCACTGCCAATTTTTTGGTAGGGAAAAGTTAATTAGACTACTTTTGGTTTAATACCAATATGGAGCCAAATTTTAATAGTATGGTGAAGAATATTCTAGAATATGTCCAAATTGAGTATGGGCACTATCAATTGTTTGGCTTCAAACCAAACTAGCATATTTACTATTTAAATTACCAAAATTTTGGTAGGGCACAGTTTTGGCTTCAATCCAAAACGGTCCTACATTCGGTCTCAAAACTGACATAAGTGGCGACGTCTGGGCGTAATTTGAATGGAAATTTGAACTAATATGGCCCATATACTTACATGGATGGGCCAGAATTTCAGCCCAACCCAAACGAGACGTTGCTGGCCTCCGTTCAGCATGGAGTAGTTGCCGCCTCCTTATGCTCGGTTTGTTGTTTAAACTTTAAATTTGAATTCTGCGGAAACCAAGAACACCATTTCAGCCATCTTCTTCCTTCGAGAGACGTAAGCTCGAATAATTCATCTTCCTCTTTTGATTTCACCTTCACATGCAAGTTGTTTCCTCAAAGATTTCCTCGCAATTATTTGTCTTGATAGGTTGAAATCGAAGAATGGAGGTTGGAGGTTACTGAGACCTAGTTCGACGAGGAGGTGAAGGCAACCTGTTCGACGGAATGCGCCGGGGGAAAGCCGCTCTCTGGCGGCCGCGCCATGGCGAGGGCGAGACGTCCCGGCGTGGAGGCGACGGCGATGGAGAAGCGGCCGACCGCCTCAGCGCCCTCCCGGACGGGGTGCTGCACCACGTGATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGGCGGTGGCGCAACCTCTGGGCGTCCGCGCCCTGCGTCGACCTCCGCATCCGGTACTTCCGCCTCGACAGCGAGCCGCCGGAGGAGCCGCGCGATTTCGTGAACCGCCTCTTCCGCCGCCGGGAGGCGTCGGCGCCGGTGGACACGCTCCGCCTGCAGTTGAGCGACCCGGACAATTTGTTTGACAACGACGATGCCAATGCGTGGATCCGGACTGCCATCAAGCGCAATGCTCGATTCATTCATCTCACTGGGCACCGCAAAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGTGATGACCGGCCATCAGATCTCCTCTGCTTCTTTGAAGACTTTGAAGATGGATAGGTGCAAGATCAATGTGGACCTCTCTATCACTGCTCCAAACCTTGTTTTTCTGAACATAGTCACACCTTACATCCGAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGACATGCTCTATCATACTTGATGACCTTTTCTTGGGTGATGATTATCAGCACATTAGTGATGAAGATGACATTGATGAAACCACTGATGATGATGATTTTGGTTATCAGAAGAATGATAAGGCAGGGTATAGGATTAATTACGCTAAAAAAGGATTTGTGTTTGGTGGAAACGAGGATGGTTATGGCTATGGTAGTGATATTGAGAGTGATGACAACACCTATGAATATAGTGAGATTGCAAATGAGTGTGGTGAGCTTCAGTATGGTAACAATGGTGATGGTCATAATTCCAGTAAAGATGGCGAATATGACAATGCTGAAACATTTGGTGGCCAAAATGTGATTCACAGCCTTTCAAATGTTAGAAGTTTGGAACTCTTAGCTGGTGCTGGAGAGGTATAGTCTTTTCATTATGTTGTATATGTATTTTGTTTTCTTCAATATCCAGCCCTTTTGAACATAATGATATTTTTCTGACTTTTTCCAAAGAAACCTTTTCCCTTTCACCAGATATCTGGTTATCCAGTGAGAACATGTGATACATTTTTTTGCTGCAGTATCAATTGATTAAACCTACTTACTTACTCATAGCATTCTATGATTTTCCATCATCCGTTGTGAGGCATTTGATTGGCAACTAAATCTCTTGAGATTGCAGCTTTGAGAGAGCAATGCTCTTAGTCGTTCAAAAAAAGAGAGAGCAATCCTCTTAGTTTTGGTGTGATTGCTTGTTACTTTTTGTTGTCGTGATAGTGTATCTTTTGACATCAGTTAAGATTCCCACAGACAATTTCGATCTGTGTATTTTTGTTCAAGGAAATACACTTTATGATATACTCCCTCCGTCCCATAAAAATTGCATTTGTAGCTCCAAGGCTTTGTCCCACAAAAATTGTATTTCTAGTCATATGGGGCCCAACCAATTGATTCATCTATATAAGTTTTCTTCCATCCCACGTAATTTGGGCTGCTAATGCTTGCAATTTTATTAAGTATGCTAATTATATGGGTTAATTCTCTCAAACTTCCTTTTAATCATTTGTATATATGGAATGTGTGTATGCAGTGGGTTCATTAAATAAGGTTATTGTGGTCATTTTTCAATCATACTATTTTGTCCTAAATTAGCTAGAAATACAATTTTTATGGGACGGAGGTAGTAGATGTTAATCCACTGTCAATATATCACCATATTATTGTTTTCATTCTTGATGCACATTGAATATCATTTGTATGCACGATGTGAGGTTGATTCAATCATTATAGTTCACTGATGAAAAAGCACTTTTGTGTCCAATATGAAGGTGGTTCTTTCTAGGGAATTGAAAAGCTGCCCAATTTTTATCAACTTGAAGACCCTGTCCCTTGGTGAATGGTGTATGGATGCTGAATTCGATGCATTAGTTTTCTTGCTACAGCGTTCACCTAATTTGGAGAGGCTTTTTCTTGAACCTCAGTTGGTACGTCTCCTCTGACTTATATGTAGAGTTCCGAGTATGCGTGCATGTTTTAATAGATTTCATTGTTCTGCAAAAAGAACTTCAATACTAGGAAGGCATTGGAAAGTGGTGTTAAACCTACGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCGAAGGACGATGCGAGAGTCCATATGCTGGCACATTTGTTCAGGGCTAATGGCATACCCTTTGATAAGATTTATGTCCATCGGTCTGGGAGCTCTCGTAAGTCAGACTGTCTCTTCTTGGCATTTTGTATTTATTTGCATTATCAGTATTAAATTACCCATCTATTTGCTGTTTAATTGAAGCATGCAACGTTAAATCTCTATCCTGCTTTCTGAAATATGGTTAAATTATCATGTCTTTCCTGTTTATACATATGACCGTGTTCCTCAAAAAGCTAAATATGGTTAAATGGACATTCTGCGCTCCTGATAGCTATTCTGTTATCAGGCTTTTCTGTTAAACAATCAAAAGGCTATTCTGTTAGCTTGAAGTTTTGATTTTCTGTGTGATCTTCACATGTGTTCTTATCTGCTTTCTGATATTGCTACCAGGTCTCCGCAGCGAGAAGGTGATGAGAGATCTAGCCAAGCAAGAACTGGAGTTCTGGGGGTCAGATGAGTTCTGGGGTTCAGATTATGAGTACTGTGGTCCAGATCCGGAGTTCGGGGATTCGGATTTGGAATTCTGATGCAACGTCAGATCATCTATCGTTCATCATATCTTCTATCGTATTTAGTTCTTATGTTCGGATTGCAATCGTCTTCTATATGTACTTAGAAAGAATCTGACGGCACGACGCATTAAGCACGCATAGCAGGGCCGTGACAGATCGGTTATTCCTCTTTGGGGTAATATTGAATGAACTATGTATGGCTATCCAAATACTGAAATGCTCTTATCCAGTGGAATGAGTTAACATTCAAATGTTTTGGAGTTTGTTT

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CDS seq

ATGCGCCGGGGGAAAGCCGCTCTCTGGCGGCCGCGCCATGGCGAGGGCGAGACGTCCCGGCGTGGAGGCGACGGCGATGGAGAAGCGGCCGACCGCCTCAGCGCCCTCCCGGACGGGGTGCTGCACCACGTGATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGGCGGTGGCGCAACCTCTGGGCGTCCGCGCCCTGCGTCGACCTCCGCATCCGGTACTTCCGCCTCGACAGCGAGCCGCCGGAGGAGCCGCGCGATTTCGTGAACCGCCTCTTCCGCCGCCGGGAGGCGTCGGCGCCGGTGGACACGCTCCGCCTGCAGTTGAGCGACCCGGACAATTTGTTTGACAACGACGATGCCAATGCGTGGATCCGGACTGCCATCAAGCGCAATGCTCGATTCATTCATCTCACTGGGCACCGCAAAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGTGATGACCGGCCATCAGATCTCCTCTGCTTCTTTGAAGACTTTGAAGATGGATAGGTGCAAGATCAATGTGGACCTCTCTATCACTGCTCCAAACCTTGTTTTTCTGAACATAGTCACACCTTACATCCGAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGACATGCTCTATCATACTTGATGACCTTTTCTTGGGTGATGATTATCAGCACATTAGTGATGAAGATGACATTGATGAAACCACTGATGATGATGATTTTGGTTATCAGAAGAATGATAAGGCAGGGTATAGGATTAATTACGCTAAAAAAGGATTTGTGTTTGGTGGAAACGAGGATGGTTATGGCTATGGTAGTGATATTGAGAGTGATGACAACACCTATGAATATAGTGAGATTGCAAATGAGTGTGGTGAGCTTCAGTATGGTAACAATGGTGATGGTCATAATTCCAGTAAAGATGGCGAATATGACAATGCTGAAACATTTGGTGGCCAAAATGTGATTCACAGCCTTTCAAATGTTAGAAGTTTGGAACTCTTAGCTGGTGCTGGAGAGGTGGTTCTTTCTAGGGAATTGAAAAGCTGCCCAATTTTTATCAACTTGAAGACCCTGTCCCTTGGTGAATGGTGTATGGATGCTGAATTCGATGCATTAGTTTTCTTGCTACAGCGTTCACCTAATTTGGAGAGGCTTTTTCTTGAACCTCAGTTGAACTTCAATACTAGGAAGGCATTGGAAAGTGGTGTTAAACCTACGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCGAAGGACGATGCGAGAGTCCATATGCTGGCACATTTGTTCAGGGCTAATGGCATACCCTTTGATAAGATTTATGTCCATCGGTCTGGGAGCTCTCGTCTCCGCAGCGAGAAGGTGATGAGAGATCTAGCCAAGCAAGAACTGGAGTTCTGGGGGTCAGATGAGTTCTGGGGTTCAGATTATGAGTACTGTGGTCCAGATCCGGAGTTCGGGGATTCGGATTTGGAATTCTGA

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Protein seq

MRRGKAALWRPRHGEGETSRRGGDGDGEAADRLSALPDGVLHHVMSFLKAWEVVRTCVLSRRWRNLWASAPCVDLRIRYFRLDSEPPEEPRDFVNRLFRRREASAPVDTLRLQLSDPDNLFDNDDANAWIRTAIKRNARFIHLTGHRKEIGVLKHRALVSTHLKILKLSYVLIDDKILKQLSSGCKSLEELDLKDCVMTGHQISSASLKTLKMDRCKINVDLSITAPNLVFLNIVTPYIRVPSFKNLESLVTCSIILDDLFLGDDYQHISDEDDIDETTDDDDFGYQKNDKAGYRINYAKKGFVFGGNEDGYGYGSDIESDDNTYEYSEIANECGELQYGNNGDGHNSSKDGEYDNAETFGGQNVIHSLSNVRSLELLAGAGEVVLSRELKSCPIFINLKTLSLGEWCMDAEFDALVFLLQRSPNLERLFLEPQLNFNTRKALESGVKPTGRSFTCKDLQMVKIRCSKDDARVHMLAHLFRANGIPFDKIYVHRSGSSRLRSEKVMRDLAKQELEFWGSDEFWGSDYEYCGPDPEFGDSDLEF

Function Putative F-box/LRR-repeat protein At3g18150 [UniProtKB/Swiss-Prot:Q9LV26]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_08g0197500 OsNip_08t0197500-01 Chr08 5638269 5643201 + RAP2018-11-26
CDS seq

ATGCGCCGGGGGAAAGCCGCTCTCTGGCGGCCGCGCCATGGCGAGGGCGAGACGTCCCGGCGTGGAGGCGACGGCGATGGAGAAGCGGCCGACCGCCTCAGCGCCCTCCCGGACGGGGTGCTGCACCACGTGATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGGCGGTGGCGCAACCTCTGGGCGTCCGCGCCCTGCGTCGACCTCCGCATCCGGTACTTCCGCCTCGACAGCGAGCCGCCGGAGGAGCCGCGCGATTTCGTGAACCGCCTCTTCCGCCGCCGGGAGGCGTCGGCGCCGGTGGACACGCTCCGCCTGCAGTTGAGCGACCCGGACAATTTGTTTGACAACGACGATGCCAATGCGTGGATCCGGACTGCCATCAAGCGCAATGCTCGATTCATTCATCTCACTGGGCACCGCAAAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGTGATGACCGGCCATCAGATCTCCTCTGCTTCTTTGAAGACTTTGAAGATGGATAGGTGCAAGATCAATGTGGACCTCTCTATCACTGCTCCAAACCTTGTTTTTCTGAACATAGTCACACCTTACATCCGAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGACATGCTCTATCATACTTGATGACCTTTTCTTGGGTGATGATTATCAGCACATTAGTGATGAAGATGACATTGATGAAACCACTGATGATGATGATTTTGGTTATCAGAAGAATGATAAGGCAGGGTATAGGATTAATTACGCTAAAAAAGGATTTGTGTTTGGTGGAAACGAGGATGGTTATGGCTATGGTAGTGATATTGAGAGTGATGACAACACCTATGAATATAGTGAGATTGCAAATGAGTGTGGTGAGCTTCAGTATGGTAACAATGGTGATGGTCATAATTCCAGTAAAGATGGCGAATATGACAATGCTGAAACATTTGGTGGCCAAAATGTGATTCACAGCCTTTCAAATGTTAGAAGTTTGGAACTCTTAGCTGGTGCTGGAGAGGTGGTTCTTTCTAGGGAATTGAAAAGCTGCCCAATTTTTATCAACTTGAAGACCCTGTCCCTTGGTGAATGGTGTATGGATGCTGAATTCGATGCATTAGTTTTCTTGCTACAGCGTTCACCTAATTTGGAGAGGCTTTTTCTTGAACCTCAGTTGAACTTCAATACTAGGAAGGCATTGGAAAGTGGTGTTAAACCTACGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCGAAGGACGATGCGAGAGTCCATATGCTGGCACATTTGTTCAGGGCTAATGGCATACCCTTTGATAAGATTTATGTCCATCGGTCTGGGAGCTCTCGTCTCCGCAGCGAGAAGGTGATGAGAGATCTAGCCAAGCAAGAACTGGAGTTCTGGGGGTCAGATGAGTTCTGGGGTTCAGATTATGAGTACTGTGGTCCAGATCCGGAGTTCGGGGATTCGGATTTGGAATTCTGA

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Protein seq

MRRGKAALWRPRHGEGETSRRGGDGDGEAADRLSALPDGVLHHVMSFLKAWEVVRTCVLSRRWRNLWASAPCVDLRIRYFRLDSEPPEEPRDFVNRLFRRREASAPVDTLRLQLSDPDNLFDNDDANAWIRTAIKRNARFIHLTGHRKEIGVLKHRALVSTHLKILKLSYVLIDDKILKQLSSGCKSLEELDLKDCVMTGHQISSASLKTLKMDRCKINVDLSITAPNLVFLNIVTPYIRVPSFKNLESLVTCSIILDDLFLGDDYQHISDEDDIDETTDDDDFGYQKNDKAGYRINYAKKGFVFGGNEDGYGYGSDIESDDNTYEYSEIANECGELQYGNNGDGHNSSKDGEYDNAETFGGQNVIHSLSNVRSLELLAGAGEVVLSRELKSCPIFINLKTLSLGEWCMDAEFDALVFLLQRSPNLERLFLEPQLNFNTRKALESGVKPTGRSFTCKDLQMVKIRCSKDDARVHMLAHLFRANGIPFDKIYVHRSGSSRLRSEKVMRDLAKQELEFWGSDEFWGSDYEYCGPDPEFGDSDLEF

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Gene Transcript Chromosome Start End Strand Source
OsNip_08g0197500 OsNip_08t0197500-02 Chr08 5638293 5643221 + IsoSeq
CDS seq

ATGACCTTTTCTTGGGTGATGATTATCAGCACATTAGTGATGAAGATGACATTGATGAAACCACTGATGATGATGATTTTGGTTATCAGAAGAATGATAAGGCAGGGTATAGGATTAATTACGCTAAAAAAGGATTTGTGTTTGGTGGAAACGAGGATGGTTATGGCTATGGTAGTGATATTGAGAGTGATGACAACACCTATGAATATAGTGAGATTGCAAATGAGTGTGGTGAGCTTCAGTATGGTAACAATGGTGATGGTCATAATTCCAGTAAAGATGGCGAATATGACAATGCTGAAACATTTGGTGGCCAAA

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Protein seq

MTFSWVMIISTLVMKMTLMKPLMMMILVIRRMIRQGIGLITLKKDLCLVETRMVMAMVVILRVMTTPMNIVRLQMSVVSFSMVTMVMVIIPVKMANMTMLKHLVAK

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.762720 0.197137 1.347716

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_08g0197400 RBH 0.116559 0.0 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os08g09760 RBH 0.491229 0.272480 0.403593
Nipponbare | IRGSP 1.0 | RAP-db Os08g0197500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_08g0006270 RBH 0.512044 2.466295 1.036616
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0006260 SBH 0.084461 0.000000 0.558428
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_08g0006330 RBH 0.370564 0.0 3.058095
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_08g0006290 RBH 0.043356 0.022288 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_08g0006120 RBH 7.088274 0.0 6.256783
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0085800 SBH 0.5204065 0.445615 0.765506
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_08g0005970 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0089000 RBH 2.7710255 3.24339 3.477557
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_08g0005950 RBH 0.210847 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_08g0006030 SBH 0.0 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_08g0005910 SBH 0.0 0.000000 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_08g0006170 SBH 0.000000 0.000000 0.290822
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_08g0005980 SBH 0.047904 1.130805 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_08G005990 RBH 0.324044 0.0 0.520351
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_08g0005880 SBH 0.226259 0.0 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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