Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0197400 | OGI:08014870 | 7/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:5633346-5636220 | ||||||||
| Gene Symbol | OsFbox424, Os_F0348 | ||||||||||
| DNA seq | CTCTTCCCTCTTCAGTCTTCGCTCAGACTCCTCGCCATTTGAGCCATCTTCCGTTGAGACGTGTAAGCTCGAATCTTTCATCTTCCCATCTGATTTCGCCAAGTTGTTTCTACAAAGATTTGCTTGCGATTTCTTTTGTCTTGGCAGATTCGAATCCGGGAACGGAGGTTGGAGGTTACTGAGAACCAGTTCGACGAGGAGGCGCGCGCAGCCTGTTCGGCGGAATGCTCGGGAGGAACGCCATGCTCGGGCCGCCGCGCCGTGGCGAGGGGGAGACGTCCCGGCGTGGAGAGGGAAGCGAAGGCGACGGCAATGGCGAGGGCGACGCGGTTGACCGGCTCAGCGCCCTCTCGGACGGGGTGCTGCACCACATCATGTCGTTCCTCAAGGCCTGGGAGGTGGTGCGCACCTGCGTGCTCTCGCGTCGCTGGCGCCACACCTGGGCGTCCGCGCCCTGCATCGACCTCCGCGTCCGGTACAATGACGTTGACAGCGAGCCGCCGGAGGAGCTGCGCGATTTCGTGAACCGCCTCTTCCGCCGTAGGGAGGCGTCAGCGCCGGTGGACACGCTCCGCCTGCAGTCCAGCGACCCGGACGAGTTGTTTGACAACGACGATGCCAACGCGTGGATCCGGACTGCCATCAACCGCAATGCTCGATTCATTCATCTCACTGGACACCGTACAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGCGATGACCGGCCATGAGATCTCATCTGCTTCTTTGAAGATTTTGAAGATGGATAAGTGCAAGATTAATGTGGACTTATCAATCACTGCTCCAAACCTCGTATTGCTGAATCTGATCACACCTTACATCCAAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGTCATGCTCTGTCATACTTGATGACTTTTTCTTGGGTGATGCTTATGAACACAGTAGTGATGAAGATGATATTGATGAAACCACTGATGAAGATGATATTGATGATCAGAAGAAGACTTACAAGACAGGGTATGGATTTGGTTTCCCTCAAAAAGGATATGGGCTTGCTGGTAACAAGGATGATTATGGCTATGGTAGTGATATTGAGAGTGATGACAATACCTATGAATATAGTGAGATTGCAAAAGAGTATGGAGATCAGCAGTATGCCCAGAATTCCAGTACCATTGTTCAGGGAGTTGGGACAAGTCAGCAGACTAAAACTATTTCTGGTGGCCATAATTTTCTTCACGGCCTTTCAAATGCTAGAAGTTTGGAGCTGTTAGCTGGTGCTGGAGAGGTATGCAATCACCATTTCAACATGCTGAAGAAACAGTTTTTCTTTTACCACTCACCTGGTCTCTGGGTGTCCAGTTAGCACATCTGATACTTCTGCACTGCAGTATCAATTAACAATAGCTACTAGTGGAGGCATTCTGGGTTTCCCATCATCTGTCTTAGGCATTCAATATACTATTAAAACCCTCAAGTTTGCAGCTTTGGGAAAGTATTGTTCTTATCTTTTGAAATAGCTTGCTGTTTTTTGTTGTCACAATAATTTATCTTTTGACATTAGTTAAGATTCCCATAGAAATTCCCATCTGTACAATTTTGTTCAAGAAAATACACTTTGTAGGAGTAGGTGATAATCTGCTCACAATATATCACTAAGTTATTGTTTTTATTCTCAATGTATTGAATATCACTTGTATGCATGATGTGAAGTTGATTCAGTATTTCAATTACCATAGTTCATTGCTGAAAAATCACTTTTGTGCCCAATATGAAGGTGGTTCTTTCTAGGGAGTTGAAAAGCTGCCCAATTTTTAGCAACTTGAAGACCTTGTCCCTTGGTGAATGGTGTATGGCTGCTGAATTCGATACATTAATCTTCTTGCTACAGCGTTCACCTAATTTGCAGAGGCTTTTCCTTAAACTTAAATTGGTAAGTTACCTAACGCTTATAAAGAGGTATGAATATGTATGATAGTTTAATAAATTCCATTGTTCTGCAAAAAGAACTTCAATACTAGGAAGCCGTTGGAGAGCGGTGCTAAACCTATGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCTAAGGATGATGTAAGAGTGCACACACTGGCATGTTTGTTCAGAGCGAACGGTATTCCCATTGAGAAGATTTATGTCCGTCGGACTGGGAGTTCTTGTAAGTTAGATGGTTTCTTCATGTCATTTTGTATTTTTTTTTGCACTATCAGTGCTAAATTACCCATGTCTTTGCTGTTTAGTTCAAGCATGTGCTAAATTATGCTCGTCTATGCTGTTTTTTTTTTAAAGATGTTCTATACATATTGCCATGTTCCCAATAGGCTTGATATCTTACCAGGCTTTTCTGTTAAAACACCCTAAGGCTATCCTGTTCAATTAAACATTGTGTTTTTGGGCATGATCTTAATGTGTGTACTTACCCGCTTTCTGATATTTCTACCAGACCTCCGTGGCGAGAAGTTTATGAGAGACCTAGGCAAACATGAACTGGAGTTCTGGGGGTCAGATTCAGAGTTCTGTGGTCCAAATTCCGAGTTCTGTGGTTCAGATTCAGAGTTTGAGGATTCAGATATGGAGTTCTGATGCAACATTGGACTAGCTATCGTTTATCATATCTTCTACTCATATTATTAGTTATTATCTTTGGATTGCAACCATCTCTAATTAATGTACTACTTAGAAAATGCTCTGACGGCAAGAACCCATTAAGTACCGAGTTGCAGGGCCGTG
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| CDS seq | ATGCTCGGGAGGAACGCCATGCTCGGGCCGCCGCGCCGTGGCGAGGGGGAGACGTCCCGGCGTGGAGAGGGAAGCGAAGGCGACGGCAATGGCGAGGGCGACGCGGTTGACCGGCTCAGCGCCCTCTCGGACGGGGTGCTGCACCACATCATGTCGTTCCTCAAGGCCTGGGAGGTGGTGCGCACCTGCGTGCTCTCGCGTCGCTGGCGCCACACCTGGGCGTCCGCGCCCTGCATCGACCTCCGCGTCCGGTACAATGACGTTGACAGCGAGCCGCCGGAGGAGCTGCGCGATTTCGTGAACCGCCTCTTCCGCCGTAGGGAGGCGTCAGCGCCGGTGGACACGCTCCGCCTGCAGTCCAGCGACCCGGACGAGTTGTTTGACAACGACGATGCCAACGCGTGGATCCGGACTGCCATCAACCGCAATGCTCGATTCATTCATCTCACTGGACACCGTACAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGCGATGACCGGCCATGAGATCTCATCTGCTTCTTTGAAGATTTTGAAGATGGATAAGTGCAAGATTAATGTGGACTTATCAATCACTGCTCCAAACCTCGTATTGCTGAATCTGATCACACCTTACATCCAAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGTCATGCTCTGTCATACTTGATGACTTTTTCTTGGGTGATGCTTATGAACACAGTAGTGATGAAGATGATATTGATGAAACCACTGATGAAGATGATATTGATGATCAGAAGAAGACTTACAAGACAGGGTATGGATTTGGTTTCCCTCAAAAAGGATATGGGCTTGCTGGTAACAAGGATGATTATGGCTATGGTAGTGATATTGAGAGTGATGACAATACCTATGAATATAGTGAGATTGCAAAAGAGTATGGAGATCAGCAGTATGCCCAGAATTCCAGTACCATTGTTCAGGGAGTTGGGACAAGTCAGCAGACTAAAACTATTTCTGGTGGCCATAATTTTCTTCACGGCCTTTCAAATGCTAGAAGTTTGGAGCTGTTAGCTGGTGCTGGAGAGGTGGTTCTTTCTAGGGAGTTGAAAAGCTGCCCAATTTTTAGCAACTTGAAGACCTTGTCCCTTGGTGAATGGTGTATGGCTGCTGAATTCGATACATTAATCTTCTTGCTACAGCGTTCACCTAATTTGCAGAGGCTTTTCCTTAAACTTAAATTGAACTTCAATACTAGGAAGCCGTTGGAGAGCGGTGCTAAACCTATGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCTAAGGATGATGTAAGAGTGCACACACTGGCATGTTTGTTCAGAGCGAACGGTATTCCCATTGAGAAGATTTATGTCCGTCGGACTGGGAGTTCTTACCTCCGTGGCGAGAAGTTTATGAGAGACCTAGGCAAACATGAACTGGAGTTCTGGGGGTCAGATTCAGAGTTCTGTGGTCCAAATTCCGAGTTCTGTGGTTCAGATTCAGAGTTTGAGGATTCAGATATGGAGTTCTGA
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| Protein seq | MLGRNAMLGPPRRGEGETSRRGEGSEGDGNGEGDAVDRLSALSDGVLHHIMSFLKAWEVVRTCVLSRRWRHTWASAPCIDLRVRYNDVDSEPPEELRDFVNRLFRRREASAPVDTLRLQSSDPDELFDNDDANAWIRTAINRNARFIHLTGHRTEIGVLKHRALVSTHLKILKLSYVLIDDKILKQLSSGCKSLEELDLKDCAMTGHEISSASLKILKMDKCKINVDLSITAPNLVLLNLITPYIQVPSFKNLESLVSCSVILDDFFLGDAYEHSSDEDDIDETTDEDDIDDQKKTYKTGYGFGFPQKGYGLAGNKDDYGYGSDIESDDNTYEYSEIAKEYGDQQYAQNSSTIVQGVGTSQQTKTISGGHNFLHGLSNARSLELLAGAGEVVLSRELKSCPIFSNLKTLSLGEWCMAAEFDTLIFLLQRSPNLQRLFLKLKLNFNTRKPLESGAKPMGRSFTCKDLQMVKIRCSKDDVRVHTLACLFRANGIPIEKIYVRRTGSSYLRGEKFMRDLGKHELEFWGSDSEFCGPNSEFCGSDSEFEDSDMEF |
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| Function | Putative F-box/LRR-repeat protein At3g18150 [UniProtKB/Swiss-Prot:Q9LV26] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0197400 | OsNip_08t0197400-01 | Chr08 | 5633346 | 5636220 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTCGGGAGGAACGCCATGCTCGGGCCGCCGCGCCGTGGCGAGGGGGAGACGTCCCGGCGTGGAGAGGGAAGCGAAGGCGACGGCAATGGCGAGGGCGACGCGGTTGACCGGCTCAGCGCCCTCTCGGACGGGGTGCTGCACCACATCATGTCGTTCCTCAAGGCCTGGGAGGTGGTGCGCACCTGCGTGCTCTCGCGTCGCTGGCGCCACACCTGGGCGTCCGCGCCCTGCATCGACCTCCGCGTCCGGTACAATGACGTTGACAGCGAGCCGCCGGAGGAGCTGCGCGATTTCGTGAACCGCCTCTTCCGCCGTAGGGAGGCGTCAGCGCCGGTGGACACGCTCCGCCTGCAGTCCAGCGACCCGGACGAGTTGTTTGACAACGACGATGCCAACGCGTGGATCCGGACTGCCATCAACCGCAATGCTCGATTCATTCATCTCACTGGACACCGTACAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGCGATGACCGGCCATGAGATCTCATCTGCTTCTTTGAAGATTTTGAAGATGGATAAGTGCAAGATTAATGTGGACTTATCAATCACTGCTCCAAACCTCGTATTGCTGAATCTGATCACACCTTACATCCAAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGTCATGCTCTGTCATACTTGATGACTTTTTCTTGGGTGATGCTTATGAACACAGTAGTGATGAAGATGATATTGATGAAACCACTGATGAAGATGATATTGATGATCAGAAGAAGACTTACAAGACAGGGTATGGATTTGGTTTCCCTCAAAAAGGATATGGGCTTGCTGGTAACAAGGATGATTATGGCTATGGTAGTGATATTGAGAGTGATGACAATACCTATGAATATAGTGAGATTGCAAAAGAGTATGGAGATCAGCAGTATGCCCAGAATTCCAGTACCATTGTTCAGGGAGTTGGGACAAGTCAGCAGACTAAAACTATTTCTGGTGGCCATAATTTTCTTCACGGCCTTTCAAATGCTAGAAGTTTGGAGCTGTTAGCTGGTGCTGGAGAGGTGGTTCTTTCTAGGGAGTTGAAAAGCTGCCCAATTTTTAGCAACTTGAAGACCTTGTCCCTTGGTGAATGGTGTATGGCTGCTGAATTCGATACATTAATCTTCTTGCTACAGCGTTCACCTAATTTGCAGAGGCTTTTCCTTAAACTTAAATTGAACTTCAATACTAGGAAGCCGTTGGAGAGCGGTGCTAAACCTATGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCTAAGGATGATGTAAGAGTGCACACACTGGCATGTTTGTTCAGAGCGAACGGTATTCCCATTGAGAAGATTTATGTCCGTCGGACTGGGAGTTCTTACCTCCGTGGCGAGAAGTTTATGAGAGACCTAGGCAAACATGAACTGGAGTTCTGGGGGTCAGATTCAGAGTTCTGTGGTCCAAATTCCGAGTTCTGTGGTTCAGATTCAGAGTTTGAGGATTCAGATATGGAGTTCTGA
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| Protein seq | MLGRNAMLGPPRRGEGETSRRGEGSEGDGNGEGDAVDRLSALSDGVLHHIMSFLKAWEVVRTCVLSRRWRHTWASAPCIDLRVRYNDVDSEPPEELRDFVNRLFRRREASAPVDTLRLQSSDPDELFDNDDANAWIRTAINRNARFIHLTGHRTEIGVLKHRALVSTHLKILKLSYVLIDDKILKQLSSGCKSLEELDLKDCAMTGHEISSASLKILKMDKCKINVDLSITAPNLVLLNLITPYIQVPSFKNLESLVSCSVILDDFFLGDAYEHSSDEDDIDETTDEDDIDDQKKTYKTGYGFGFPQKGYGLAGNKDDYGYGSDIESDDNTYEYSEIAKEYGDQQYAQNSSTIVQGVGTSQQTKTISGGHNFLHGLSNARSLELLAGAGEVVLSRELKSCPIFSNLKTLSLGEWCMAAEFDTLIFLLQRSPNLQRLFLKLKLNFNTRKPLESGAKPMGRSFTCKDLQMVKIRCSKDDVRVHTLACLFRANGIPIEKIYVRRTGSSYLRGEKFMRDLGKHELEFWGSDSEFCGPNSEFCGSDSEFEDSDMEF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.116559 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0197500 | RBH | 0.762720 | 0.197137 | 1.347716 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09750 | RBH | 0.073382 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0197400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006260 | RBH | 0.000000 | 1.851622 | 0.396470 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006250 | RBH | 0.0 | 0.0 | 0.091311 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006320 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006290 | SBH | 0.043356 | 0.022288 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006110 | RBH | 0.0 | 0.606739 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0085800 | SBH | 0.5204065 | 0.445615 | 0.765506 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005960 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0089000 | SBH | 2.7710255 | 3.24339 | 3.477557 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005940 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006030 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005900 | RBH | 0.0 | 2.601303 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005980 | SBH | 0.047904 | 1.130805 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005980 | RBH | 0.000000 | 0.692517 | 0.175324 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005870 | RBH | 0.198984 | 0.0 | 0.0 |
