Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
Os08g0197500		OGI:08014880 \| 15/16			Nipponbare \| IRGSP 1.0 \| RAP-db			Chr08:5638269-5643201		Homologues MicroCollinearity RGI-JBrowse RAP-DB Ricevarmap2
Gene Symbol		OsFbox425, Os_F0168, Os_F0662
DNA seq		GGAGTTTTTCCCCCTTTCTTCTCACTCCAACTGATGAGTGGACGAAGCAGACGACTCTCTCCCTCATCGGAGACCTCATCTGCTCGCGGGAGTCGGATCTGTTGTGCTGGAGTCGAAGAGCTCGCCAGCGGTCAAATCCATGGTGCGGATTCAGGGGCAGCGTGAGCAAGCCAGGCTAGCTCCCTGGTAGGCCCCCGTCCCTCTCGCCTCACTCTCTCTTCCTCCGTCCTAGCCTAAATTGGGCGCAAGTGATGCGGATTGAGTGCAGCCGCACCCAACGGGCCTTTCACCTCATTTGAAGAAAACATAGCGATTTTTATCTTGGTTGGATCAGTTCCTATTTATTTTTGATTCCGTGAGATTATATTTGATTACGCATCTTCTATGACTTGATTTCTTTTAATCTTATTCTTGGATTCGATTTCAGTTACCATAAACATGTTTCTAGGTCCGATTTATTTACAAGATAGGATTATTTTGAGGGAATTTGGGTTGCATCTGTTTGTTTTTGTGTTCATGCTTTCAAGTGACTTTTGAGGTGAGACGGCATTGAGACACGTGCGGAGCATTTGAGACAGGTGTGAAGGGCAACAACGTGCCAACGTGAGGGAAGCGGAGGCTCACACCGTGACGGAGGAAAGCGGACTATCACGGACGAAGGCGTAATGTGAAGATCAGAAACATATGAATTTTTTAATTAGTTAAGACTAGAAAAAAATACCCGTGCATTGCAACGGGTGAAGGTTATTTTATTCTTATTATATTATACGGTTTAGTTAAGATGAAATTCACTTTGGGAATTCGCTTTAATATATAACTTTTTAGAAAATCGTGAACTACAATTAAGAGTCCGATCGTCTCAAGTTAGCGTGCGAGTTTTTTTTATAAGAGATTTCTTATACGACTCCTTTTGTATTTTCAAAAGCGAACGAACTTAAAAACCGACTCATACACAGATGACGTACCAAAGTACTAGCAAAAAATATTTTTAATTTTTATAATAGTAGAGATTAGATAAAGATATTTGTAAATTTCTACTCTACGGGCCTATTTGGTTCTCTACCCTACCTATTTATTGGTAGTGCCAAAATCTAGGCAAATTTTGGCACTGCCAATTTTTTGGTAGGGAAAAGTTAATTAGACTACTTTTGGTTTAATACCAATATGGAGCCAAATTTTAATAGTATGGTGAAGAATATTCTAGAATATGTCCAAATTGAGTATGGGCACTATCAATTGTTTGGCTTCAAACCAAACTAGCATATTTACTATTTAAATTACCAAAATTTTGGTAGGGCACAGTTTTGGCTTCAATCCAAAACGGTCCTACATTCGGTCTCAAAACTGACATAAGTGGCGACGTCTGGGCGTAATTTGAATGGAAATTTGAACTAATATGGCCCATATACTTACATGGATGGGCCAGAATTTCAGCCCAACCCAAACGAGACGTTGCTGGCCTCCGTTCAGCATGGAGTAGTTGCCGCCTCCTTATGCTCGGTTTGTTGTTTAAACTTTAAATTTGAATTCTGCGGAAACCAAGAACACCATTTCAGCCATCTTCTTCCTTCGAGAGACGTAAGCTCGAATAATTCATCTTCCTCTTTTGATTTCACCTTCACATGCAAGTTGTTTCCTCAAAGATTTCCTCGCAATTATTTGTCTTGATAGGTTGAAATCGAAGAATGGAGGTTGGAGGTTACTGAGACCTAGTTCGACGAGGAGGTGAAGGCAACCTGTTCGACGGAATGCGCCGGGGGAAAGCCGCTCTCTGGCGGCCGCGCCATGGCGAGGGCGAGACGTCCCGGCGTGGAGGCGACGGCGATGGAGAAGCGGCCGACCGCCTCAGCGCCCTCCCGGACGGGGTGCTGCACCACGTGATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGGCGGTGGCGCAACCTCTGGGCGTCCGCGCCCTGCGTCGACCTCCGCATCCGGTACTTCCGCCTCGACAGCGAGCCGCCGGAGGAGCCGCGCGATTTCGTGAACCGCCTCTTCCGCCGCCGGGAGGCGTCGGCGCCGGTGGACACGCTCCGCCTGCAGTTGAGCGACCCGGACAATTTGTTTGACAACGACGATGCCAATGCGTGGATCCGGACTGCCATCAAGCGCAATGCTCGATTCATTCATCTCACTGGGCACCGCAAAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGTGATGACCGGCCATCAGATCTCCTCTGCTTCTTTGAAGACTTTGAAGATGGATAGGTGCAAGATCAATGTGGACCTCTCTATCACTGCTCCAAACCTTGTTTTTCTGAACATAGTCACACCTTACATCCGAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGACATGCTCTATCATACTTGATGACCTTTTCTTGGGTGATGATTATCAGCACATTAGTGATGAAGATGACATTGATGAAACCACTGATGATGATGATTTTGGTTATCAGAAGAATGATAAGGCAGGGTATAGGATTAATTACGCTAAAAAAGGATTTGTGTTTGGTGGAAACGAGGATGGTTATGGCTATGGTAGTGATATTGAGAGTGATGACAACACCTATGAATATAGTGAGATTGCAAATGAGTGTGGTGAGCTTCAGTATGGTAACAATGGTGATGGTCATAATTCCAGTAAAGATGGCGAATATGACAATGCTGAAACATTTGGTGGCCAAAATGTGATTCACAGCCTTTCAAATGTTAGAAGTTTGGAACTCTTAGCTGGTGCTGGAGAGGTATAGTCTTTTCATTATGTTGTATATGTATTTTGTTTTCTTCAATATCCAGCCCTTTTGAACATAATGATATTTTTCTGACTTTTTCCAAAGAAACCTTTTCCCTTTCACCAGATATCTGGTTATCCAGTGAGAACATGTGATACATTTTTTTGCTGCAGTATCAATTGATTAAACCTACTTACTTACTCATAGCATTCTATGATTTTCCATCATCCGTTGTGAGGCATTTGATTGGCAACTAAATCTCTTGAGATTGCAGCTTTGAGAGAGCAATGCTCTTAGTCGTTCAAAAAAAGAGAGAGCAATCCTCTTAGTTTTGGTGTGATTGCTTGTTACTTTTTGTTGTCGTGATAGTGTATCTTTTGACATCAGTTAAGATTCCCACAGACAATTTCGATCTGTGTATTTTTGTTCAAGGAAATACACTTTATGATATACTCCCTCCGTCCCATAAAAATTGCATTTGTAGCTCCAAGGCTTTGTCCCACAAAAATTGTATTTCTAGTCATATGGGGCCCAACCAATTGATTCATCTATATAAGTTTTCTTCCATCCCACGTAATTTGGGCTGCTAATGCTTGCAATTTTATTAAGTATGCTAATTATATGGGTTAATTCTCTCAAACTTCCTTTTAATCATTTGTATATATGGAATGTGTGTATGCAGTGGGTTCATTAAATAAGGTTATTGTGGTCATTTTTCAATCATACTATTTTGTCCTAAATTAGCTAGAAATACAATTTTTATGGGACGGAGGTAGTAGATGTTAATCCACTGTCAATATATCACCATATTATTGTTTTCATTCTTGATGCACATTGAATATCATTTGTATGCACGATGTGAGGTTGATTCAATCATTATAGTTCACTGATGAAAAAGCACTTTTGTGTCCAATATGAAGGTGGTTCTTTCTAGGGAATTGAAAAGCTGCCCAATTTTTATCAACTTGAAGACCCTGTCCCTTGGTGAATGGTGTATGGATGCTGAATTCGATGCATTAGTTTTCTTGCTACAGCGTTCACCTAATTTGGAGAGGCTTTTTCTTGAACCTCAGTTGGTACGTCTCCTCTGACTTATATGTAGAGTTCCGAGTATGCGTGCATGTTTTAATAGATTTCATTGTTCTGCAAAAAGAACTTCAATACTAGGAAGGCATTGGAAAGTGGTGTTAAACCTACGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCGAAGGACGATGCGAGAGTCCATATGCTGGCACATTTGTTCAGGGCTAATGGCATACCCTTTGATAAGATTTATGTCCATCGGTCTGGGAGCTCTCGTAAGTCAGACTGTCTCTTCTTGGCATTTTGTATTTATTTGCATTATCAGTATTAAATTACCCATCTATTTGCTGTTTAATTGAAGCATGCAACGTTAAATCTCTATCCTGCTTTCTGAAATATGGTTAAATTATCATGTCTTTCCTGTTTATACATATGACCGTGTTCCTCAAAAAGCTAAATATGGTTAAATGGACATTCTGCGCTCCTGATAGCTATTCTGTTATCAGGCTTTTCTGTTAAACAATCAAAAGGCTATTCTGTTAGCTTGAAGTTTTGATTTTCTGTGTGATCTTCACATGTGTTCTTATCTGCTTTCTGATATTGCTACCAGGTCTCCGCAGCGAGAAGGTGATGAGAGATCTAGCCAAGCAAGAACTGGAGTTCTGGGGGTCAGATGAGTTCTGGGGTTCAGATTATGAGTACTGTGGTCCAGATCCGGAGTTCGGGGATTCGGATTTGGAATTCTGATGCAACGTCAGATCATCTATCGTTCATCATATCTTCTATCGTATTTAGTTCTTATGTTCGGATTGCAATCGTCTTCTATATGTACTTAGAAAGAATCTGACGGCACGACGCATTAAGCACGCATAGCAGGGCCGTGACAGATCGGTTATTCCTCTTTGGGGTAATATTGAATGAACTATGTATGGCTATCCAAATACTGAAATGCTCTTATCCAGTGGAATGAGTTAACATTC More
CDS seq		ATGCGCCGGGGGAAAGCCGCTCTCTGGCGGCCGCGCCATGGCGAGGGCGAGACGTCCCGGCGTGGAGGCGACGGCGATGGAGAAGCGGCCGACCGCCTCAGCGCCCTCCCGGACGGGGTGCTGCACCACGTGATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGGCGGTGGCGCAACCTCTGGGCGTCCGCGCCCTGCGTCGACCTCCGCATCCGGTACTTCCGCCTCGACAGCGAGCCGCCGGAGGAGCCGCGCGATTTCGTGAACCGCCTCTTCCGCCGCCGGGAGGCGTCGGCGCCGGTGGACACGCTCCGCCTGCAGTTGAGCGACCCGGACAATTTGTTTGACAACGACGATGCCAATGCGTGGATCCGGACTGCCATCAAGCGCAATGCTCGATTCATTCATCTCACTGGGCACCGCAAAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGTGATGACCGGCCATCAGATCTCCTCTGCTTCTTTGAAGACTTTGAAGATGGATAGGTGCAAGATCAATGTGGACCTCTCTATCACTGCTCCAAACCTTGTTTTTCTGAACATAGTCACACCTTACATCCGAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGACATGCTCTATCATACTTGATGACCTTTTCTTGGGTGATGATTATCAGCACATTAGTGATGAAGATGACATTGATGAAACCACTGATGATGATGATTTTGGTTATCAGAAGAATGATAAGGCAGGGTATAGGATTAATTACGCTAAAAAAGGATTTGTGTTTGGTGGAAACGAGGATGGTTATGGCTATGGTAGTGATATTGAGAGTGATGACAACACCTATGAATATAGTGAGATTGCAAATGAGTGTGGTGAGCTTCAGTATGGTAACAATGGTGATGGTCATAATTCCAGTAAAGATGGCGAATATGACAATGCTGAAACATTTGGTGGCCAAAATGTGATTCACAGCCTTTCAAATGTTAGAAGTTTGGAACTCTTAGCTGGTGCTGGAGAGGTGGTTCTTTCTAGGGAATTGAAAAGCTGCCCAATTTTTATCAACTTGAAGACCCTGTCCCTTGGTGAATGGTGTATGGATGCTGAATTCGATGCATTAGTTTTCTTGCTACAGCGTTCACCTAATTTGGAGAGGCTTTTTCTTGAACCTCAGTTGAACTTCAATACTAGGAAGGCATTGGAAAGTGGTGTTAAACCTACGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCGAAGGACGATGCGAGAGTCCATATGCTGGCACATTTGTTCAGGGCTAATGGCATACCCTTTGATAAGATTTATGTCCATCGGTCTGGGAGCTCTCGTCTCCGCAGCGAGAAGGTGATGAGAGATCTAGCCAAGCAAGAACTGGAGTTCTGGGGGTCAGATGAGTTCTGGGGTTCAGATTATGAGTACTGTGGTCCAGATCCGGAGTTCGGGGATTCGGATTTGGAATTCTGA More
Protein seq		MRRGKAALWRPRHGEGETSRRGGDGDGEAADRLSALPDGVLHHVMSFLKAWEVVRTCVLSRRWRNLWASAPCVDLRIRYFRLDSEPPEEPRDFVNRLFRRREASAPVDTLRLQLSDPDNLFDNDDANAWIRTAIKRNARFIHLTGHRKEIGVLKHRALVSTHLKILKLSYVLIDDKILKQLSSGCKSLEELDLKDCVMTGHQISSASLKTLKMDRCKINVDLSITAPNLVFLNIVTPYIRVPSFKNLESLVTCSIILDDLFLGDDYQHISDEDDIDETTDDDDFGYQKNDKAGYRINYAKKGFVFGGNEDGYGYGSDIESDDNTYEYSEIANECGELQYGNNGDGHNSSKDGEYDNAETFGGQNVIHSLSNVRSLELLAGAGEVVLSRELKSCPIFINLKTLSLGEWCMDAEFDALVFLLQRSPNLERLFLEPQLNFNTRKALESGVKPTGRSFTCKDLQMVKIRCSKDDARVHMLAHLFRANGIPFDKIYVHRSGSSRLRSEKVMRDLAKQELEFWGSDEFWGSDYEYCGPDPEFGDSDLEF
Function		Putative F-box/LRR-repeat protein At3g18150 [UniProtKB/Swiss-Prot:Q9LV26]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os08g0197500	Os08t0197500-01	Chr08	5638269	5643201	+	irgsp1_rep
CDS seq	ATGCGCCGGGGGAAAGCCGCTCTCTGGCGGCCGCGCCATGGCGAGGGCGAGACGTCCCGGCGTGGAGGCGACGGCGATGGAGAAGCGGCCGACCGCCTCAGCGCCCTCCCGGACGGGGTGCTGCACCACGTGATGTCGTTCCTCAAGGCGTGGGAGGTGGTGCGCACCTGCGTGCTCTCCCGGCGGTGGCGCAACCTCTGGGCGTCCGCGCCCTGCGTCGACCTCCGCATCCGGTACTTCCGCCTCGACAGCGAGCCGCCGGAGGAGCCGCGCGATTTCGTGAACCGCCTCTTCCGCCGCCGGGAGGCGTCGGCGCCGGTGGACACGCTCCGCCTGCAGTTGAGCGACCCGGACAATTTGTTTGACAACGACGATGCCAATGCGTGGATCCGGACTGCCATCAAGCGCAATGCTCGATTCATTCATCTCACTGGGCACCGCAAAGAGATCGGGGTGTTAAAGCACAGGGCCTTGGTCTCTACCCACCTCAAGATCTTGAAGCTGTCCTATGTCCTGATCGATGACAAGATCCTCAAGCAGCTTTCTTCAGGGTGCAAATCTTTGGAAGAACTGGATCTTAAGGACTGCGTGATGACCGGCCATCAGATCTCCTCTGCTTCTTTGAAGACTTTGAAGATGGATAGGTGCAAGATCAATGTGGACCTCTCTATCACTGCTCCAAACCTTGTTTTTCTGAACATAGTCACACCTTACATCCGAGTTCCATCGTTCAAGAACTTGGAGTCGCTGGTGACATGCTCTATCATACTTGATGACCTTTTCTTGGGTGATGATTATCAGCACATTAGTGATGAAGATGACATTGATGAAACCACTGATGATGATGATTTTGGTTATCAGAAGAATGATAAGGCAGGGTATAGGATTAATTACGCTAAAAAAGGATTTGTGTTTGGTGGAAACGAGGATGGTTATGGCTATGGTAGTGATATTGAGAGTGATGACAACACCTATGAATATAGTGAGATTGCAAATGAGTGTGGTGAGCTTCAGTATGGTAACAATGGTGATGGTCATAATTCCAGTAAAGATGGCGAATATGACAATGCTGAAACATTTGGTGGCCAAAATGTGATTCACAGCCTTTCAAATGTTAGAAGTTTGGAACTCTTAGCTGGTGCTGGAGAGGTGGTTCTTTCTAGGGAATTGAAAAGCTGCCCAATTTTTATCAACTTGAAGACCCTGTCCCTTGGTGAATGGTGTATGGATGCTGAATTCGATGCATTAGTTTTCTTGCTACAGCGTTCACCTAATTTGGAGAGGCTTTTTCTTGAACCTCAGTTGAACTTCAATACTAGGAAGGCATTGGAAAGTGGTGTTAAACCTACGGGAAGATCATTTACTTGTAAAGACCTGCAAATGGTGAAGATCAGATGCTCGAAGGACGATGCGAGAGTCCATATGCTGGCACATTTGTTCAGGGCTAATGGCATACCCTTTGATAAGATTTATGTCCATCGGTCTGGGAGCTCTCGTCTCCGCAGCGAGAAGGTGATGAGAGATCTAGCCAAGCAAGAACTGGAGTTCTGGGGGTCAGATGAGTTCTGGGGTTCAGATTATGAGTACTGTGGTCCAGATCCGGAGTTCGGGGATTCGGATTTGGAATTCTGA More
Protein seq	MRRGKAALWRPRHGEGETSRRGGDGDGEAADRLSALPDGVLHHVMSFLKAWEVVRTCVLSRRWRNLWASAPCVDLRIRYFRLDSEPPEEPRDFVNRLFRRREASAPVDTLRLQLSDPDNLFDNDDANAWIRTAIKRNARFIHLTGHRKEIGVLKHRALVSTHLKILKLSYVLIDDKILKQLSSGCKSLEELDLKDCVMTGHQISSASLKTLKMDRCKINVDLSITAPNLVFLNIVTPYIRVPSFKNLESLVTCSIILDDLFLGDDYQHISDEDDIDETTDDDDFGYQKNDKAGYRINYAKKGFVFGGNEDGYGYGSDIESDDNTYEYSEIANECGELQYGNNGDGHNSSKDGEYDNAETFGGQNVIHSLSNVRSLELLAGAGEVVLSRELKSCPIFINLKTLSLGEWCMDAEFDALVFLLQRSPNLERLFLEPQLNFNTRKALESGVKPTGRSFTCKDLQMVKIRCSKDDARVHMLAHLFRANGIPFDKIYVHRSGSSRLRSEKVMRDLAKQELEFWGSDEFWGSDYEYCGPDPEFGDSDLEF More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_08g0197500	RBH	0.762720	0.197137	1.347716
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os08g09760	RBH	0.491229	0.272480	0.403593
Nipponbare \| IRGSP 1.0 \| RAP-db	Os08g0197400	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_08g0006270	RBH	0.512044	2.466295	1.036616
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_08g0006260	RBH	0.084461	0.000000	0.558428
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_08g0006330	RBH	0.370564	0.0	3.058095
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_08g0006290	RBH	0.043356	0.022288	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_08g0006120	RBH	7.088274	0.0	6.256783
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_08G0085800	SBH	0.5204065	0.445615	0.765506
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_08g0005970	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_08G0089000	RBH	2.7710255	3.24339	3.477557
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_08g0005950	RBH	0.210847	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_08g0006030	SBH	0.0	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_08g0005910	SBH	0.0	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_08g0006170	SBH	0.000000	0.000000	0.290822
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_08g0005980	SBH	0.047904	1.130805	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_08G005990	RBH	0.324044	0.0	0.520351
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_08g0005880	SBH	0.226259	0.0	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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