Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0632901 | OGI:04027510 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:32199986-32202721 | ||||||||
| Gene Symbol | SDK8 | ||||||||||
| DNA seq | CTATGTTCCAACAACTCTGTTAGTATTTGCTTCATGCTGGTTGCCTCCAAAGATTCTTGCCATACCAAAATCTGATATCTTAGGACTCATATCAACATCCAATAAGATATTGCTTGGTTTGAGATCTCTATGAATTACAGTTAACCTTGAATCTTGGTGGAGATAAAGAAGTCCTCTAGCTACTCCTTTGATTATCTTGAACCTTGTTGGCCAATCAAGAACATATTTATTTGCATGATCTATAAGAATGGTAAACTATGTTATTATTAAGTATGCAGCCAAGTTTCTTTGGATCATATGATAAGTTTATGCAATACTGTAGTATATAAATCTGAACAGTACCAAAAATGAAAGCATCCAAGCTTTTGTTTGGCAAGTATTCGTAAATTAGCAGCTTCTCATCTCCGTATATACAATAACCAAGAAGTCTAACGAGGTTTCTATGCTGCAGTTTGGCAATTAGAACAACTTCATTTCTGAACTCTTCTGCTCCTTGGCCAGAACCCTTGCTAAGCCTTTTAATTGCGACTTCTTTGCCGTCATCTAGCATTCCCTGCATAATTTAATCACTTTATTTTTTTTATTAAGAAGGCTGTTCATTTGTAAATGAGTGGTTTTACAGTTCCTAAAGACTGAAGTCTGAAAAGGTACTACAGTCTTAATGTTAATTTGAGGTACCTCCATATTTGGGATGGTAAAAATCTCTCTGCTAATTTATCAGTACACTGCAGGGGCATTCCTACTTCCTAGTTCCTTTTTTTTTTGACATGCTACTTCCTAGTTCCTAGTTCCTACAGCATACTATACGGGGTCACGAGACCCTAGGTAAAATTTCAATCTCTAGTTGTTTTAGCCTATATTAACTATATTATTAGTTAAAAATTATAGTATTATATATGTTAGTTTTTGTCCCTATTGTAATTCTCAAGATAGAACTTATTTTGTACCTTGTAAACCTTCCCGAAGCCCCCTTGTCCGAGCATGTTGTCATCAGAAAAATTGTTTGTGGCAGCAGCAATTTCTCCAAAACTAACAAACGGGAGCTCTAAATTTTCATCTCCAAGTTCATTTGATGCACTCAAGTATCCTAGAATCCCTCTCTTCTGGACAACCTTATTCTGATGACGTTTGCCTGACAGGACTACAAATATATATAGTGTGTTAATATTAGCTCTAGTAGGAGTAGAGGATATAAGCTGCGAGTATTACCTCTGCACTTGTATAACCATACAAGGAATATGCTCATCAGCAGAAGCAAACATGCTGCTGTAAGTGGGAGCATAATTTTTACCACAGTCCTCTTCTTATTGTTAACTGAATGGGAAGAAAATTTTCACCGAGAAAACCATAAAGTAATTAATTGCTGAACCCATTAGTTTCAGGCAAATGAATGCACATGCGTGCAATTTTGTGATAGTCATGTGTACCTAGTTCAGACTTTGCCAATCTCACATGCAAGTCCTGCCCTTTGTCCACATAACGAACATCAACCATGTCGCCGATCCACATGACGCAGCCGCGGCCGCTGATGTCCGCGGCGGCGTAGGCGACGCAGGAACAGTTGGCCAAGCACCTCGCCCTGCACTCGTCAAGCGTGGCGCCCGTGTCCACCGTGGCGTTGTCCGTGTCGGGGAGCTTCACGCCGCGCACCGGCACGAACCCGTCCGTGGTGCTCCCGTTGCCGCACTCCAGCGGCGCGTTCCTCCGGCACCCACCGGAGGTATCCCTCATGGACCACCGCGAGGGGGACACCGGGCTGAACCCCGCCATGCAGCTGCAGAAGAGCGTCGACGCGGTGTCCTCGTTGCACAGCCCGAACGCGCCGCACTTGGCGTAGTCGTCGCACACGCCGCGCGGTGCCTTCATGTACGGGATCCACACCTTGCTGCTGGGATCCCACACGAGGCGCTCGGTCACGCCGGCCTCGTCCAGCACGAGGCGGGAGAAGGGGGAGCCGGCGGCGGCGGCGGCGGTGAAGACGTAGGCGATCTCGTCGGGCGTGACCACCACCTGGCTCGAGAAGATGGATTCGTACGACGCCATCTCCGGGACGCCGCTGAACCACTGCCCGTTCCATGGCCCCGTCCGGTACTTCTTGGCGCCGCCGCACCACGTGACGCAGTCCGGGAGCCCCCTCGTGTCCAGCACGCGGCGGCAGTCTCCCGTCGCCGGGTCGTCGTGCGCGCGCCACGACGAGAGGAACCACGCGTCGCCGGTCTGCCGGTTGTTGCCGAGCCTCATGCCGGCGATCAGTGTGTTCGACGGGTGATCGAACGACTGCCAGATGAAGACACCGGTGTTCAGCTGGTCGCGCTCGCGCACGACGAGGTTTCCGGACTCCAGCAGCTGCGCCGCCGTCGCTGATGAAGACTTGCCAGTCGTGTTCGACGACCAGGCGGCCCTGCCGGAGCCGTCGAGTAGGACGAGCCCGCCCGCGCCATTGTTAACCAGTACGCCGGCGGTGTCGTTCAGTGGGCTGTCACGGTTGGCCACCCAGACGGCGTCCGCGGACTCGGAGAACCATATCGCGAGGTATCTCCTGTTTGGCAAGCCGAGTGAGAAGAAGCCCAGAGTGAAGGAGCCACCGGCCGACACGAGCGTGTTGCCGTCAGTGAGGTTGCGGCCATTGCTCAGAGTGTCCGATGCAACGCCGGCGGCAGATGTTCCGAGAGTAAGGAGGACCATGAAGAAGAAGGTGAGGCTAAGGTGGAAAATGTTGGCGGTTGCTGCTTCCAT
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| CDS seq | ATGGAAGCAGCAACCGCCAACATTTTCCACCTTAGCCTCACCTTCTTCTTCATGGTCCTCCTTACTCTCGGAACATCTGCCGCCGGCGTTGCATCGGACACTCTGAGCAATGGCCGCAACCTCACTGACGGCAACACGCTCGTGTCGGCCGGTGGCTCCTTCACTCTGGGCTTCTTCTCACTCGGCTTGCCAAACAGGAGATACCTCGCGATATGGTTCTCCGAGTCCGCGGACGCCGTCTGGGTGGCCAACCGTGACAGCCCACTGAACGACACCGCCGGCGTACTGGTTAACAATGGCGCGGGCGGGCTCGTCCTACTCGACGGCTCCGGCAGGGCCGCCTGGTCGTCGAACACGACTGGCAAGTCTTCATCAGCGACGGCGGCGCAGCTGCTGGAGTCCGGAAACCTCGTCGTGCGCGAGCGCGACCAGCTGAACACCGGTGTCTTCATCTGGCAGTCGTTCGATCACCCGTCGAACACACTGATCGCCGGCATGAGGCTCGGCAACAACCGGCAGACCGGCGACGCGTGGTTCCTCTCGTCGTGGCGCGCGCACGACGACCCGGCGACGGGAGACTGCCGCCGCGTGCTGGACACGAGGGGGCTCCCGGACTGCGTCACGTGGTGCGGCGGCGCCAAGAAGTACCGGACGGGGCCATGGAACGGGCAGTGGTTCAGCGGCGTCCCGGAGATGGCGTCGTACGAATCCATCTTCTCGAGCCAGGTGGTGGTCACGCCCGACGAGATCGCCTACGTCTTCACCGCCGCCGCCGCCGCCGGCTCCCCCTTCTCCCGCCTCGTGCTGGACGAGGCCGGCGTGACCGAGCGCCTCGTGTGGGATCCCAGCAGCAAGGTGTGGATCCCGTACATGAAGGCACCGCGCGGCGTGTGCGACGACTACGCCAAGTGCGGCGCGTTCGGGCTGTGCAACGAGGACACCGCGTCGACGCTCTTCTGCAGCTGCATGGCGGGGTTCAGCCCGGTGTCCCCCTCGCGGTGGTCCATGAGGGATACCTCCGGTGGGTGCCGGAGGAACGCGCCGCTGGAGTGCGGCAACGGGAGCACCACGGACGGGTTCGTGCCGGTGCGCGGCGTGAAGCTCCCCGACACGGACAACGCCACGGTGGACACGGGCGCCACGCTTGACGAGTGCAGGGCGAGGTGCTTGGCCAACTGTTCCTGCGTCGCCTACGCCGCCGCGGACATCAGCGGCCGCGGCTGCGTCATGTGGATCGGCGACATGGTTGATGTTCGTTATGTGGACAAAGGGCAGGACTTGCATGTGAGATTGGCAAAGTCTGAACTAGTCCTGTCAGGCAAACGTCATCAGAATAAGGTTGTCCAGAAGAGAGGGATTCTAGGATACTTGAGTGCATCAAATGAACTTGGAGATGAAAATTTAGAGCTCCCGTTTGTTAGTTTTGGAGAAATTGCTGCTGCCACAAACAATTTTTCTGATGACAACATGCTCGGACAAGGGGGCTTCGGGAAGGTTTACAAGGGAATGCTAGATGACGGCAAAGAAGTCGCAATTAAAAGGCTTAGCAAGGGTTCTGGCCAAGGAGCAGAAGAGTTCAGAAATGAAGTTGTTCTAATTGCCAAACTGCAGCATAGAAACCTCGTTAGACTTCTTGGTTATTGTATATACGGAGATGAGAAGCTGCTAATTTACGAATACTTGCCAAACAAAAGCTTGGATGCTTTCATTTTTGATCATGCAAATAAATATGTTCTTGATTGGCCAACAAGGTTCAAGATAATCAAAGGAGTAGCTAGAGGACTTCTTTATCTCCACCAAGATTCAAGGTTAACTGTAATTCATAGAGATCTCAAACCAAGCAATATCTTATTGGATGTTGATATGAGTCCTAAGATATCAGATTTTGGTATGGCAAGAATCTTTGGAGGCAACCAGCATGAAGCAAATACTAACAGAGTTGTTGGAACATAG
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| Protein seq | MEAATANIFHLSLTFFFMVLLTLGTSAAGVASDTLSNGRNLTDGNTLVSAGGSFTLGFFSLGLPNRRYLAIWFSESADAVWVANRDSPLNDTAGVLVNNGAGGLVLLDGSGRAAWSSNTTGKSSSATAAQLLESGNLVVRERDQLNTGVFIWQSFDHPSNTLIAGMRLGNNRQTGDAWFLSSWRAHDDPATGDCRRVLDTRGLPDCVTWCGGAKKYRTGPWNGQWFSGVPEMASYESIFSSQVVVTPDEIAYVFTAAAAAGSPFSRLVLDEAGVTERLVWDPSSKVWIPYMKAPRGVCDDYAKCGAFGLCNEDTASTLFCSCMAGFSPVSPSRWSMRDTSGGCRRNAPLECGNGSTTDGFVPVRGVKLPDTDNATVDTGATLDECRARCLANCSCVAYAAADISGRGCVMWIGDMVDVRYVDKGQDLHVRLAKSELVLSGKRHQNKVVQKRGILGYLSASNELGDENLELPFVSFGEIAAATNNFSDDNMLGQGGFGKVYKGMLDDGKEVAIKRLSKGSGQGAEEFRNEVVLIAKLQHRNLVRLLGYCIYGDEKLLIYEYLPNKSLDAFIFDHANKYVLDWPTRFKIIKGVARGLLYLHQDSRLTVIHRDLKPSNILLDVDMSPKISDFGMARIFGGNQHEANTNRVVGT |
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| Function | Receptor-like serine/threonine-protein kinase SD1-8 [UniProtKB/Swiss-Prot:O81905] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0632901 | OsNip_04t0632901-00 | Chr04 | 32199986 | 32202721 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAAGCAGCAACCGCCAACATTTTCCACCTTAGCCTCACCTTCTTCTTCATGGTCCTCCTTACTCTCGGAACATCTGCCGCCGGCGTTGCATCGGACACTCTGAGCAATGGCCGCAACCTCACTGACGGCAACACGCTCGTGTCGGCCGGTGGCTCCTTCACTCTGGGCTTCTTCTCACTCGGCTTGCCAAACAGGAGATACCTCGCGATATGGTTCTCCGAGTCCGCGGACGCCGTCTGGGTGGCCAACCGTGACAGCCCACTGAACGACACCGCCGGCGTACTGGTTAACAATGGCGCGGGCGGGCTCGTCCTACTCGACGGCTCCGGCAGGGCCGCCTGGTCGTCGAACACGACTGGCAAGTCTTCATCAGCGACGGCGGCGCAGCTGCTGGAGTCCGGAAACCTCGTCGTGCGCGAGCGCGACCAGCTGAACACCGGTGTCTTCATCTGGCAGTCGTTCGATCACCCGTCGAACACACTGATCGCCGGCATGAGGCTCGGCAACAACCGGCAGACCGGCGACGCGTGGTTCCTCTCGTCGTGGCGCGCGCACGACGACCCGGCGACGGGAGACTGCCGCCGCGTGCTGGACACGAGGGGGCTCCCGGACTGCGTCACGTGGTGCGGCGGCGCCAAGAAGTACCGGACGGGGCCATGGAACGGGCAGTGGTTCAGCGGCGTCCCGGAGATGGCGTCGTACGAATCCATCTTCTCGAGCCAGGTGGTGGTCACGCCCGACGAGATCGCCTACGTCTTCACCGCCGCCGCCGCCGCCGGCTCCCCCTTCTCCCGCCTCGTGCTGGACGAGGCCGGCGTGACCGAGCGCCTCGTGTGGGATCCCAGCAGCAAGGTGTGGATCCCGTACATGAAGGCACCGCGCGGCGTGTGCGACGACTACGCCAAGTGCGGCGCGTTCGGGCTGTGCAACGAGGACACCGCGTCGACGCTCTTCTGCAGCTGCATGGCGGGGTTCAGCCCGGTGTCCCCCTCGCGGTGGTCCATGAGGGATACCTCCGGTGGGTGCCGGAGGAACGCGCCGCTGGAGTGCGGCAACGGGAGCACCACGGACGGGTTCGTGCCGGTGCGCGGCGTGAAGCTCCCCGACACGGACAACGCCACGGTGGACACGGGCGCCACGCTTGACGAGTGCAGGGCGAGGTGCTTGGCCAACTGTTCCTGCGTCGCCTACGCCGCCGCGGACATCAGCGGCCGCGGCTGCGTCATGTGGATCGGCGACATGGTTGATGTTCGTTATGTGGACAAAGGGCAGGACTTGCATGTGAGATTGGCAAAGTCTGAACTAGTCCTGTCAGGCAAACGTCATCAGAATAAGGTTGTCCAGAAGAGAGGGATTCTAGGATACTTGAGTGCATCAAATGAACTTGGAGATGAAAATTTAGAGCTCCCGTTTGTTAGTTTTGGAGAAATTGCTGCTGCCACAAACAATTTTTCTGATGACAACATGCTCGGACAAGGGGGCTTCGGGAAGGTTTACAAGGGAATGCTAGATGACGGCAAAGAAGTCGCAATTAAAAGGCTTAGCAAGGGTTCTGGCCAAGGAGCAGAAGAGTTCAGAAATGAAGTTGTTCTAATTGCCAAACTGCAGCATAGAAACCTCGTTAGACTTCTTGGTTATTGTATATACGGAGATGAGAAGCTGCTAATTTACGAATACTTGCCAAACAAAAGCTTGGATGCTTTCATTTTTGATCATGCAAATAAATATGTTCTTGATTGGCCAACAAGGTTCAAGATAATCAAAGGAGTAGCTAGAGGACTTCTTTATCTCCACCAAGATTCAAGGTTAACTGTAATTCATAGAGATCTCAAACCAAGCAATATCTTATTGGATGTTGATATGAGTCCTAAGATATCAGATTTTGGTATGGCAAGAATCTTTGGAGGCAACCAGCATGAAGCAAATACTAACAGAGTTGTTGGAACATAG
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| Protein seq | MEAATANIFHLSLTFFFMVLLTLGTSAAGVASDTLSNGRNLTDGNTLVSAGGSFTLGFFSLGLPNRRYLAIWFSESADAVWVANRDSPLNDTAGVLVNNGAGGLVLLDGSGRAAWSSNTTGKSSSATAAQLLESGNLVVRERDQLNTGVFIWQSFDHPSNTLIAGMRLGNNRQTGDAWFLSSWRAHDDPATGDCRRVLDTRGLPDCVTWCGGAKKYRTGPWNGQWFSGVPEMASYESIFSSQVVVTPDEIAYVFTAAAAAGSPFSRLVLDEAGVTERLVWDPSSKVWIPYMKAPRGVCDDYAKCGAFGLCNEDTASTLFCSCMAGFSPVSPSRWSMRDTSGGCRRNAPLECGNGSTTDGFVPVRGVKLPDTDNATVDTGATLDECRARCLANCSCVAYAAADISGRGCVMWIGDMVDVRYVDKGQDLHVRLAKSELVLSGKRHQNKVVQKRGILGYLSASNELGDENLELPFVSFGEIAAATNNFSDDNMLGQGGFGKVYKGMLDDGKEVAIKRLSKGSGQGAEEFRNEVVLIAKLQHRNLVRLLGYCIYGDEKLLIYEYLPNKSLDAFIFDHANKYVLDWPTRFKIIKGVARGLLYLHQDSRLTVIHRDLKPSNILLDVDMSPKISDFGMARIFGGNQHEANTNRVVGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.123529 | 0.471795 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0633200 | RBH | 0.000000 | 0.409613 | 0.900444 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g54020 | RBH | 0.216037 | 0.301662 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0632901 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027850 | SBH | 0.131562 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028600 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028290 | SBH | 0.0 | 0.237076 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | SBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028350 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0507200 | SBH | 1.9603475 | 2.1253495 | 2.8731885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0027030 | SBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0511300 | RBH | 0.443925 | 0.0263595 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027410 | SBH | 0.0 | 0.037525 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027340 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027880 | RBH | 0.176059 | 0.0 | 0.133201 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027930 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012670 | SBH | 0.284199 | 0.643363 | 0.235737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012660 | SBH | 0.428041 | 1.303368 | 1.550173 |
