Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0027410 | OGI:04027370 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:33614211-33639727 | ||||||||
| Gene Symbol | SDK8, SDRLK-53, SDRLK-54 | ||||||||||
| DNA seq | ttaattatctgatgcatacatgattctcctgagtcttgactcttgactcttgaggagcacgcggttggaccaaaggaagcagcgtaataacgaatggccgagacttttctgtccgtcgagataaagttttgctacgaattcaaactgaactgtggggagactacggtgaagtggcctgacgagagcataggcgtagcaggtatcagtactcagtgttgtgatgctaacttgtgcagtttgtggctggctggctggctcggtggcaccgggacaacctcgcaactagaaatatcgacgcttgaacgcttgtgcacaacagaaaacttactacaactatttctgtagacgacaacatgaaggctggaggatcaacgatttatgctcaagaacaattgatggagactactgaaggatcaaggaagttgtttgcgttacgcaaagagacaacagggattaccccaagagattttcctttttttttttttgtaaaccattgaaaatgaaccatacacccacaaagcaatcatattcctaggttcttgcacaattgatcaagtggtgaattctacaaccagctaaatctgaaattAaacatctaacgtccttgtagtgtggtaagacttatactgttcacagacttgttggcatcctctcttgcccctcctgccatgcaattccttggcacaaaatatgcaggttgcttaggagtaggaagtgttgtggcttcattctcgagcatggccacaactgatgacatgagtggtctagcatttgggtcttcctgaacgcataacagtcctacatggatacagagcaaaaactcattaagtgaatatatctgcagaataattgagtccacgagatcctctgcctttccattcttccacaagctccatgcctgaaccaagggaacaaagttcctaattagtgcaaaatcctagctattgaaactttatgcattttgatatttcttagaacttacacacttacacaggctataagatttggaaaacccattataagatgaggagagcttatcttagagccgcttataagttccaaaactaaaacaccaaagctgtaggtgtcagacttgacagagaagatgccttccattgcatatcagGAgacatgtaaccactatatgaatcatgtcaccaacgagtgtaagttatttaagtgttttccaagtatataaaagttagtattgtaatcataagtagtgcaatagttactcactatgtcccgactacatgtctagtgtttgcttgatgctggttgccaccaaagatccttgtcatgccaaaatctgatattttggggctcatcccctcatccaataaaatgttgctcgctttgagatctctgtgaattattgtcatcctcgaatcttggtggagataaacaagtcctctagctactcctttgattatgttgaaccgtgtttgccagtcaagcatagacttttttgaatcatctaccgtgaacaATataaaacgatacttatagttcacacatggccttttggtaacagtcttccaccaaacgtggaaaaagaaaaggtaaaaaaggaatatatgattaggacataccaaaaaggaagtaatccaagcttttgttgggcaagtattcatatatgagaagcttttcctctccgtgaatgcagcaaccaagaagcctgactagatttttgtgctgcaatttggcaataaggaccacttcatttctgaactcttctactccttgtccagaatgcttgctaagccttttaatggccacttctttgttaccgcctagcatgccctgcacaatttaatcactttaatttttattaagaaagttcatcgggatatacacttgttcacacagtatcatggatgtatggtttcacccctgaggttctatatttgattcttaacacaatcatacattcttctcaattatttaacatcaagtttgttggaacaaaatccaataagcatggcaagggcttccctccaatgggagggaggccaagcttggtcctgtgaggagatgagaggaagaggatgaaggatgagagccctttcctcgaatggttcctgtgtcatctagttcaattctgccagaacaaatccggcccgctaatgcccaccaggccgccaagcccatgttgacaagaacccgatttcaagtcgagatcaatgggttacgggtgtgtcttcttaactcgtttccggtgcgatggctcaaagtttgggtaccgaggaacaaaatcgatggtAaataatcaattttatcatcacaaaaaatgcaattgtatgccacatatgttacggtcctactcctctccaaatatcaattatacatgtttcaccatgtgctcctaaaggaagcacttagcgtgcagaaaaataacataaacacctaccgtccctctaataagctgatgctattttcacctgtttgtctgccttcaaaggccctatgtgcaaaatacacaggctgtataggagctgaaagcgttgtggtctcgttctccaacatggacacaaccgaagacatgagtggtctattatttggattatcttgcacgcacaatagacctatttggatacatagtaaaacttcagttggtgagcaactcttagaaatggatgagtccatcaaatccatcgccctgtcgttcttccacaagttccatgcctgaaacagtggaatcaagtccatataaaattagtacaattaatctgaattgtagagataaagcattccaccatacttacataagctaacaaattggggaagtccgtcagccgaggcaagctaatcttcaagcaacttacaatctctaagagtatAacaccaaagctatatgtgtcggatttgactgaaaaggcgccatccattgcatattcaggagacatgtaaccgctgcttaatgatttagcagtaagtaaagattcgagcaaataaacattgtgaacattaatgcatgaatgactcactatgttccaacaactctgttagtatttgcttcatgctggttgcctccaaagattcttgccataccaaaaTCtgatatcttaggactcatatcaacatccaataagatattgcttggtttgagatctctatgaattacagttaaccttgaatcttggtggagataaagaagtcctctagctactcctttgattatcttgaaccttgttggccaatcaagaacatatttatttgcatgatctataagaatggtaaactatgttattattaagtatgcagccaagtttctttggatcatatgataagtttatgcaatactgtagtatataaatctgaacagtaccaaaaatgaaagcatccaagcttttgtttggcaagtattcgtaaattagcagcttctcatctccgtatatacaataaccaagaagtctaacgaggtttctatgctgcagtttggcaattagaacaacttcatttctgaactcttctgctccttggccagaacccttgctaagccttttaattgcgacttctttgccgtcatctagcattccctgcataatttaatcactttaTtttttttattaagaaggctgttcatttgtaaatgagtggttttacagttcctaaagactgaagtctgaaaaggtactacagtcttaatgttaatttgaggtacctccatatttgggatggtaaaaatctctctgctaatttatcagtacagtgcaggggcattcctacttcctagttccttttttttttttttgacatgctacttcctagttcctagttcctacagcatactatacggggtcacgagaccctaggtaaaatttcaatctctagttgttttagcctatattaactatattattagttaaaaattatagtattatatatgttagtttttgtccctattgtaattctcaagatagaacttattttgtaccttgtaaaccttcccgaagcccccttgtccgagcatgttgtcgtcagaaaaattgtttgtggcagcagcaatttctccaaaactaacaaacgggagctctaaattttcatctccaagttcatttgatgcactcaagtatcctagaatccctctcttctggacaaccttattctgatgacgtttgcctgacaggactacaaatatatatagtgtgttaatattagctctagtaggagtagaggatataagctgcgagtattacctctgcacttgtataaccatacaaggaatatgctcatcagcagaagcaaacatgctgctgtaagtgggagcaTAATTTTtaccacagtcctcttcttattgttaactgaatgggaagaaaattttcaccgagaaaaccataaagtaattaattgctgaacccattagtttcaggcaaatgaatgcacatgcgtgcaattttgtgatagtcatgtgtacctagttcagactttgccaatctcacatgcaagtcctgccctttgtccacataacgaacatcaaccatgtcgccgatccacatgacgcagccgcggccgctgatgtccgcggcggcgtaggcgacgcaggaacagttggccaagcacctcgccctgcactcgtcaagcgtggcgcccgtgtccaccgtggcgttgtccgtgtcggggagcttcacgccgcgcaccgtcacgaacccgtccgtggtgctcccgttgccgcactccagcggcgcgttcctccggcacccaccggaggtatccctcatggaccaccgcgagggggacaccgggctgaaccccgccatgcagctgcagaagagcgtcgacgcggtgtcctcgttgcacagcccgaacgcgccgcacttggcgtagtcgtcgcacacgccgcgcggtgccttcatgtacgggatccacaccttgctgctgggatcccacacgaggcgctcggtcacgccggcctcgtccagcacgaggcgggagaagggggagccggcggcggcggcggcggtgaagacgtaggcgatctcgtcgggcgtgaccaccac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| CDS seq | atgacgcagatcatcaacgtgccgcgttcaactctcagatcattttggtcttctggcttatttggaaacaacgttaatgcaaaaatcttccaatctgaatccaatacgcctctggagtctggaggttcttttgccgtcccgggaaagagctcctgccttgcttgtccaaaaaagaagaacaagggccagatgaatatggcctacctcccagtaaatcgattgatctcccccagcggcaagctcgtctccaagagcggcgtctttgcactcggtttcttCtccccagccacttccaaccagagcttattcctcggcatatggtataacaacatcccagagcgaacatacgtttgggttgctaaccgtgacaacccaatcaccacaccttcatcagcgatgctcgccatcagcaatagttctgaccttgtattcggagaccccagctcagaccttcaggtcttcgtctggcacgggaccaagccatattaccgctccattgtgcttgacagtgtgtgggtgtccggcaaagcatatggcagcagcacctccttcatgtaccaaacatatgtaaaCacacaggatgagttctatgttatctacaccacctctgatggctcaccatacatgcgcatcatgcttgactacacgggcaccttcaggctcctgagttggaacgtcaactcgtcatcatgggcaatctattctcaacgcccagcagccattggcgattgtgatccctacggctcgtgtggcccattcggttactgtgacttcacgtcggtcatcccaagatgccagtgcccggatggatttgagcctaacggctccaactcttcaagtggatgccggagaaagcaacaattaagatgtggagaagggaaccatttcatgaccatgcctggaatgaagctccctgacaagttcttttatgtccaggacagaagctttgaggagtgcgcggctgagtgtagccgaaactgctcatgcacggcctatgcttacaccaacttgaccataaccggctctcccggtaccacagccagccagtcaaggtgcttgctttgggttggtgagcttgttgacatggcgaggaacaatcttggtgacaacttgtacctccggttggccgactctccaggtcataaaaagagcaggtatgtagtcaaggttgtagtcccCattatagcatgcgtgctaatgctcacgtgcatataccttgtctggaaatggatatcgaaaggtgaaaagagaaataatgaaaatcagaatagagcgatgctaggaaactttagagcttctcatgaagtatatgagcaaaatcaggaattcccatgtattaattttgaagatgttgtcactgcaacaaacaattttagtgattcaaatatgcttggagaaggaggtttcggcaaggtttataagggcaagttgggaggtggcaaagaagttgcggttaaaagactcagtacaggttccacacagggattagagcattttacaaatgaagtggtccttattgccaaattgcagcacaaaaatcttgttaggcttcttggttgctgcattcatggagatgaaaagctccttatttatgaatacttaccaaacaaaagcttggatcacttcctttttgatccagcaagtaaatttattcttgattggccaacaagcggttacatGTctcctgaatacgcaatggatggggtcttttcagtcaagtctgacatataTAgctttggtgttatactcttggagattgtaagcggtttgaagattagcttacctcagctgatggattttcccaacttgttggcctatgcatggagattatggaaggatgataagaccatggatttggtggactcatccattgctgagagttgctcaaaaaacgaggttttactatgtatccacataggcctgttgtgcgtgcaagataatccaaatagtaggccactcatgtcttctgttgttttcatgttggagaatgaacaggcagcacttcccgctccaatacaacctgtgtattttgcacatagggcctctgaaaccaaacaaacaggggaaaataccagcagctctaataataacatgagtctcacggagatgcaaggaaaaaaagaatcaacagttatggaagcagcaaccaccaacattttctaccgtcccgtcatcttcttctccgtgctcctttgtttccaataccgtgccgccggcgttgcatcggacacgctcagcaatggccgcaacctcactgacggcgacacgctcgtgtcagccaatggctccttcactctggggttcttctcacccggcttgccaagcaggagatacctcgcgatatggttctccgagtcggcggacgccgtctgggtggccaaccgcgacagcccactgaacgacaccgccggcgtagtggttatcgatggcacgggcgggctcgtcctgctcgacggcgccgccggccaggccgcctggtcgtcgaacacgactggctcgtctccatcggtggcggtgcagctgctcgagtctgggaacctcgtcgtgcgcgaccagggcagcggcgacgtgctgtggcagtcgttcgaccacccgtcgaacaccctgatcgccggcatgaggctcggcaggaacccacggaccggcgccgagtggtccctcacgtcgtggcgcgcgcccgactacccggcgacggggggctgccgccgcgtgatggacacgagagggctagcggactgcgtctcgtggtgcggcgccggcaagaagtaccgcacggggccatggaacgggctgtggttcagcggtgtcccggagatggcatcgtactcgtccatgttcgcgaaccaggtggtggtcaagcccgacgagatcgcctacgtcttcaccgccgccaccgccgcggcccccttctcccgcctcgtgctgagtgaggccggcgtgatccagcgcctcgtgtgggatcccagcagcaaggggtggaacacgttcgcgcaggcgccgcgcgacgtgtgcgacgactacgccaagtgcggcgcgttcgggctgtgcaacgtgaacaccgcgtcgacgctcttctgcagctgcatggcggggttcagcccgatgttcccctcccagtggtccatgagggagacctccggtggttgccggaggaacgcgccgctggagtgcggcaacgggagcaccacggacgggttcgtgccggtgcgcggcgtgaagctccccgacacggacaacgccacggtggacacgggcgccacgcttgacgagtgcagggcgaggtgcttcgccaactgttcctgcgtcgcctacgccgccgcggacatccgaggcgccggcggcggcagcggatgcgtgatgtggacgggtgacgtcattgacgttcgttttggagacattgctgctgcaacaaataatttttctgacgacaacatgctcggacaaggtggcttcggaaagggcatgctgggtgataacaaagaagtggcaattaaaaggcttagcaagggttctggacaaggagtagaagagttcagaaatgaagttgttctaattgccaaattgcagcacaggaacctcgttaaacttcttggctgttgcatacatggagatgagaagctgctaatttatgaatacttgccaaacaaaagcttggaagctttcattttcgtcaagtccgacacatatagctatggtgttatactcttggagattgtaagtggtctgaagattagcttacctcggctgatggactttcccaacctattagcttatgcatggagcttatggaaggatgacaaggccatggatttggtggattcatccattgctgagagttgctaa
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| Protein seq | MTQIINVPRSTLRSFWSSGLFGNNVNAKIFQSESNTPLESGGSFAVPGKSSCLACPKKKNKGQMNMAYLPVNRLISPSGKLVSKSGVFALGFFSPATSNQSLFLGIWYNNIPERTYVWVANRDNPITTPSSAMLAISNSSDLVFGDPSSDLQVFVWHGTKPYYRSIVLDSVWVSGKAYGSSTSFMYQTYVNTQDEFYVIYTTSDGSPYMRIMLDYTGTFRLLSWNVNSSSWAIYSQRPAAIGDCDPYGSCGPFGYCDFTSVIPRCQCPDGFEPNGSNSSSGCRRKQQLRCGEGNHFMTMPGMKLPDKFFYVQDRSFEECAAECSRNCSCTAYAYTNLTITGSPGTTASQSRCLLWVGELVDMARNNLGDNLYLRLADSPGHKKSRYVVKVVVPIIACVLMLTCIYLVWKWISKGEKRNNENQNRAMLGNFRASHEVYEQNQEFPCINFEDVVTATNNFSDSNMLGEGGFGKVYKGKLGGGKEVAVKRLSTGSTQGLEHFTNEVVLIAKLQHKNLVRLLGCCIHGDEKLLIYEYLPNKSLDHFLFDPASKFILDWPTSGYMSPEYAMDGVFSVKSDIYSFGVILLEIVSGLKISLPQLMDFPNLLAYAWRLWKDDKTMDLVDSSIAESCSKNEVLLCIHIGLLCVQDNPNSRPLMSSVVFMLENEQAALPAPIQPVYFAHRASETKQTGENTSSSNNNMSLTEMQGKKESTVMEAATTNIFYRPVIFFSVLLCFQYRAAGVASDTLSNGRNLTDGDTLVSANGSFTLGFFSPGLPSRRYLAIWFSESADAVWVANRDSPLNDTAGVVVIDGTGGLVLLDGAAGQAAWSSNTTGSSPSVAVQLLESGNLVVRDQGSGDVLWQSFDHPSNTLIAGMRLGRNPRTGAEWSLTSWRAPDYPATGGCRRVMDTRGLADCVSWCGAGKKYRTGPWNGLWFSGVPEMASYSSMFANQVVVKPDEIAYVFTAATAAAPFSRLVLSEAGVIQRLVWDPSSKGWNTFAQAPRDVCDDYAKCGAFGLCNVNTASTLFCSCMAGFSPMFPSQWSMRETSGGCRRNAPLECGNGSTTDGFVPVRGVKLPDTDNATVDTGATLDECRARCFANCSCVAYAAADIRGAGGGSGCVMWTGDVIDVRFGDIAAATNNFSDDNMLGQGGFGKGMLGDNKEVAIKRLSKGSGQGVEEFRNEVVLIAKLQHRNLVKLLGCCIHGDEKLLIYEYLPNKSLEAFIFVKSDTYSYGVILLEIVSGLKISLPRLMDFPNLLAYAWSLWKDDKAMDLVDSSIAESC |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [UniProtKB/Swiss-Prot:O81832] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027410 | OsLima_04g0027410.02 | Chr04 | 33614211 | 33625566 | - | NAM | ||
| CDS seq | atggaagttttactatgtatccacatagggctgttgtgcgtgcaagataatccaaataataggccacccatgtcttctgttgttttcatgttagagaatgaagctgcagcgcttccagctccaatacaacctgtgtattttgcacatagggcctctggagccaaacaatcaggaggaaataccagcaactctaataataacatgagcctcacgaaaaactcacccgttatggaagcagcaaccgccaacattttccaccttagcctcaccttcttcttcatggtcctccttactctcggaacatctgccgccggcgttgcatcggacactctgagcaatggccgcaacctcactgacggcaacacgctcgtgtcggccggtggctccttcactctgggcttcttctcactcggcttgccaagcaggagatacctcgcgatatggttctccgagtccgcggacgccgtctgggtggccaaccgtgacagcccactgaacgacaccgccggcgtactggttaacaatggcgcgggcgggctcgtcctactcgacggctccggcagggccgcctggtcgtcgaacacgactggcaagtcttcatcagcgacggcggcgcagctgctggagtccggaaacctcgtcgtgcgcgagcgcgaccagctgaacaccggtgtcttcatctggcagtcgttcgatcacccgtcgaacacactgatcgccggcatgaggctcggcaacaaccggcagaccggcgacgcgtggttcctctcgtcgtggcgcgcgcacgacgacccggcgacgggagactgccgccgcgtgctggacacgagggggctcccggactgcgtcacgtggtgcggcggcgccaagaagtaccggacggggccatggaacgggcagtggttcagcggcgtcccggagatggcgtcgtacgaatccatcttctcgagccaggtggtggtcacgcccgacgagatcgcctacgtcttcaccgccgccgccgccgccggctcccccttctcccgcctcgtgctggacgaggccggcgtgaccgagcgcctcgtgtgggatcccagcagcaaggtgtggatcccgtacatgaaggcaccgcgcggcgtgtgcgacgactacgccaagtgcggcgcgttcgggctgtgcaacgaggacaccgcgtcgacgctcttctgcagctgcatggcggggttcagcccggtgtccccctcgcggtggtccatgagggatacctccggtgggtgccggaggaacgcgccgctggagtgcggcaacgggagcaccacggacgggttcgtgacggtgcgcggcgtgaagctccccgacacggacaacgccacggtggacacgggcgccacgcttgacgagtgcagggcgaggtgcttggccaactgttcctgcgtcgcctacgccgccgcggacatcagcggccgcggctgcgtcatgtggatcggcgacatggttgatgttcgttatgtggacaaagggcaggacttgcatgtgagattggcaaagtctgaactagttaacaataagaagaggactgtggtaAAAATTAtgctcccacttacagcagcatgtttgcttctgctgatgagcatattccttgtatggttatacaagtgcagagtcctgtcaggcaaacgtcatcagaataaggttgtccagaagagagggattctaggatacttgagtgcatcaaatgaacttggagatgaaaatttagagctcccgtttgttagttttggagaaattgctgctgccacaaacaatttttctgacgacaacatgctcggacaagggggcttcgggaaggtttacaagcatagaaacctcgttagacttcttggttattgtatatacggagatgagaagctgctaatttacgaatacttgccaaacaaaagcttggatgctttcatttttgatcatgcaaataaatatgttcttgattggccaacaaggttcaagataatcaaaggagtagctagaggacttctttatctccaccaagattcaaggttaactgtaattcatagagatctcaaaccaagcaatatcttattggatgttgatatgagtcctaagatatcaGAttttggtatggcaagaatctttggaggcaaccagcatgaagcaaatactaacagagttgttggaacatacggttacatgtctcctgaatatgcaatggatggcgccttttcagtcaaatccgacacatatagctttggtgtTatactcttagagattattagcttgcctcggctgacggacttccccaatttgttagcttatgcatggaacttgtggaagaacgacagggcgatggatttgatggactcatccatttctaagagttgctcaccaactgaagttttactatgtatccaaataggtctattgtgcgtgcaagataatccaaataatagaccactcatgtcttcggttgtgtccatgttggagaacgagaccacaacgctttcagctcctatacagcctgtgtattttgcacatagggcctttgaaggcagacaaacaggtgaaaatagcatcagcttattagagggacggaccaagcttggcctccctcccattggagggaagcccttgccatgcttattggattttgttccaacaaacttgataatcaaatatagaacctcaggggtgaaaccatacatccatgatactggcatgctaggcggtaacaaagaagtggccattaaaaggcttagcaagcattctggacaaggagtagaagagttcagaaatgaagtggtccttattgccaaattgcagcacaaaaatctagtcaggcttcttggttgctgcattcacggagaggaaaagcttctcatatatgaatacttgcccaacaaaagcttggattacttcctttttggcatcttctctgtcaagtctgacacctacagctttggtgttttagttttggaacttataagcggctctaagataagctctcctcatcttataatgggttttccaaatcttatagcctgtgcatggagcttgtggaagaatggaaaggcagaggatctcgtggactcaattattctgcagatatattcacttaatgagtttttgctctgtatccatgtaggactgttatgcgttcaggaagacccaaatgctagaccactcatgtcatcagttgtggccatgctcgagaatgaagccacaacacttcctactcctaagcaacctgcatattttgtgccaaggaattgcatggcaggaggggcaagagaggatgccaacaagtctgtgaacagtataagtcttaccacactacaaggacgttgtcccggtgccaccgagccagccagccagccacaaactgcacaagttagcatcacaacactgagtactgatacctgctacgcctatgctctcgtcaggccacttcaccgtagtctccccacagttcagtttgaattcgtagcaaaactttatctcgacggacagaaaagtctcggccattcgttattacgctgcttcctttggtccaaccgcgtgctcctcaagagtcaagagtcaagactcaggagaatcatgtatgcatcagataattaa
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| Protein seq | MEVLLCIHIGLLCVQDNPNNRPPMSSVVFMLENEAAALPAPIQPVYFAHRASGAKQSGGNTSNSNNNMSLTKNSPVMEAATANIFHLSLTFFFMVLLTLGTSAAGVASDTLSNGRNLTDGNTLVSAGGSFTLGFFSLGLPSRRYLAIWFSESADAVWVANRDSPLNDTAGVLVNNGAGGLVLLDGSGRAAWSSNTTGKSSSATAAQLLESGNLVVRERDQLNTGVFIWQSFDHPSNTLIAGMRLGNNRQTGDAWFLSSWRAHDDPATGDCRRVLDTRGLPDCVTWCGGAKKYRTGPWNGQWFSGVPEMASYESIFSSQVVVTPDEIAYVFTAAAAAGSPFSRLVLDEAGVTERLVWDPSSKVWIPYMKAPRGVCDDYAKCGAFGLCNEDTASTLFCSCMAGFSPVSPSRWSMRDTSGGCRRNAPLECGNGSTTDGFVTVRGVKLPDTDNATVDTGATLDECRARCLANCSCVAYAAADISGRGCVMWIGDMVDVRYVDKGQDLHVRLAKSELVNNKKRTVVKIMLPLTAACLLLLMSIFLVWLYKCRVLSGKRHQNKVVQKRGILGYLSASNELGDENLELPFVSFGEIAAATNNFSDDNMLGQGGFGKVYKHRNLVRLLGYCIYGDEKLLIYEYLPNKSLDAFIFDHANKYVLDWPTRFKIIKGVARGLLYLHQDSRLTVIHRDLKPSNILLDVDMSPKISDFGMARIFGGNQHEANTNRVVGTYGYMSPEYAMDGAFSVKSDTYSFGVILLEIISLPRLTDFPNLLAYAWNLWKNDRAMDLMDSSISKSCSPTEVLLCIQIGLLCVQDNPNNRPLMSSVVSMLENETTTLSAPIQPVYFAHRAFEGRQTGENSISLLEGRTKLGLPPIGGKPLPCLLDFVPTNLIIKYRTSGVKPYIHDTGMLGGNKEVAIKRLSKHSGQGVEEFRNEVVLIAKLQHKNLVRLLGCCIHGEEKLLIYEYLPNKSLDYFLFGIFSVKSDTYSFGVLVLELISGSKISSPHLIMGFPNLIACAWSLWKNGKAEDLVDSIILQIYSLNEFLLCIHVGLLCVQEDPNARPLMSSVVAMLENEATTLPTPKQPAYFVPRNCMAGGAREDANKSVNSISLTTLQGRCPGATEPASQPQTAQVSITTLSTDTCYAYALVRPLHRSLPTVQFEFVAKLYLDGQKSLGHSLLRCFLWSNRVLLKSQESRLRRIMYASDN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027410 | OsLima_04g0027410.01 | Chr04 | 33625570 | 33639727 | - | NAM | ||
| CDS seq | atgacgcagatcatcaacgtgccgcgttcaactctcagatcattttggtcttctggcttatttggaaacaacgttaatgcaaaaatcttccaatctgaatccaatacgcctctggagtctggaggttcttttgccgtcccgggaaagagctcctgccttgcttgtccaaaaaagaagaacaagggccagatgaatatggcctacctcccagtaaatcgattgatctcccccagcggcaagctcgtctccaagagcggcgtctttgcactcggtttcttCtccccagccacttccaaccagagcttattcctcggcatatggtataacaacatcccagagcgaacatacgtttgggttgctaaccgtgacaacccaatcaccacaccttcatcagcgatgctcgccatcagcaatagttctgaccttgtattcggagaccccagctcagaccttcaggtcttcgtctggcacgggaccaagccatattaccgctccattgtgcttgacagtgtgtgggtgtccggcaaagcatatggcagcagcacctccttcatgtaccaaacatatgtaaaCacacaggatgagttctatgttatctacaccacctctgatggctcaccatacatgcgcatcatgcttgactacacgggcaccttcaggctcctgagttggaacgtcaactcgtcatcatgggcaatctattctcaacgcccagcagccattggcgattgtgatccctacggctcgtgtggcccattcggttactgtgacttcacgtcggtcatcccaagatgccagtgcccggatggatttgagcctaacggctccaactcttcaagtggatgccggagaaagcaacaattaagatgtggagaagggaaccatttcatgaccatgcctggaatgaagctccctgacaagttcttttatgtccaggacagaagctttgaggagtgcgcggctgagtgtagccgaaactgctcatgcacggcctatgcttacaccaacttgaccataaccggctctcccggtaccacagccagccagtcaaggtgcttgctttgggttggtgagcttgttgacatggcgaggaacaatcttggtgacaacttgtacctccggttggccgactctccaggtcataaaaagagcaggtatgtagtcaaggttgtagtcccCattatagcatgcgtgctaatgctcacgtgcatataccttgtctggaaatggatatcgaaaggtgaaaagagaaataatgaaaatcagaatagagcgatgctaggaaactttagagcttctcatgaagtatatgagcaaaatcaggaattcccatgtattaattttgaagatgttgtcactgcaacaaacaattttagtgattcaaatatgcttggagaaggaggtttcggcaaggtttataagggcaagttgggaggtggcaaagaagttgcggttaaaagactcagtacaggttccacacagggattagagcattttacaaatgaagtggtccttattgccaaattgcagcacaaaaatcttgttaggcttcttggttgctgcattcatggagatgaaaagctccttatttatgaatacttaccaaacaaaagcttggatcacttcctttttgatccagcaagtaaatttattcttgattggccaacaagcggttacatGTctcctgaatacgcaatggatggggtcttttcagtcaagtctgacatataTAgctttggtgttatactcttggagattgtaagcggtttgaagattagcttacctcagctgatggattttcccaacttgttggcctatgcatggagattatggaaggatgataagaccatggatttggtggactcatccattgctgagagttgctcaaaaaacgaggttttactatgtatccacataggcctgttgtgcgtgcaagataatccaaatagtaggccactcatgtcttctgttgttttcatgttggagaatgaacaggcagcacttcccgctccaatacaacctgtgtattttgcacatagggcctctgaaaccaaacaaacaggggaaaataccagcagctctaataataacatgagtctcacggagatgcaaggaaaaaaagaatcaacagttatggaagcagcaaccaccaacattttctaccgtcccgtcatcttcttctccgtgctcctttgtttccaataccgtgccgccggcgttgcatcggacacgctcagcaatggccgcaacctcactgacggcgacacgctcgtgtcagccaatggctccttcactctggggttcttctcacccggcttgccaagcaggagatacctcgcgatatggttctccgagtcggcggacgccgtctgggtggccaaccgcgacagcccactgaacgacaccgccggcgtagtggttatcgatggcacgggcgggctcgtcctgctcgacggcgccgccggccaggccgcctggtcgtcgaacacgactggctcgtctccatcggtggcggtgcagctgctcgagtctgggaacctcgtcgtgcgcgaccagggcagcggcgacgtgctgtggcagtcgttcgaccacccgtcgaacaccctgatcgccggcatgaggctcggcaggaacccacggaccggcgccgagtggtccctcacgtcgtggcgcgcgcccgactacccggcgacggggggctgccgccgcgtgatggacacgagagggctagcggactgcgtctcgtggtgcggcgccggcaagaagtaccgcacggggccatggaacgggctgtggttcagcggtgtcccggagatggcatcgtactcgtccatgttcgcgaaccaggtggtggtcaagcccgacgagatcgcctacgtcttcaccgccgccaccgccgcggcccccttctcccgcctcgtgctgagtgaggccggcgtgatccagcgcctcgtgtgggatcccagcagcaaggggtggaacacgttcgcgcaggcgccgcgcgacgtgtgcgacgactacgccaagtgcggcgcgttcgggctgtgcaacgtgaacaccgcgtcgacgctcttctgcagctgcatggcggggttcagcccgatgttcccctcccagtggtccatgagggagacctccggtggttgccggaggaacgcgccgctggagtgcggcaacgggagcaccacggacgggttcgtgccggtgcgcggcgtgaagctccccgacacggacaacgccacggtggacacgggcgccacgcttgacgagtgcagggcgaggtgcttcgccaactgttcctgcgtcgcctacgccgccgcggacatccgaggcgccggcggcggcagcggatgcgtgatgtggacgggtgacgtcattgacgttcgttttggagacattgctgctgcaacaaataatttttctgacgacaacatgctcggacaaggtggcttcggaaagggcatgctgggtgataacaaagaagtggcaattaaaaggcttagcaagggttctggacaaggagtagaagagttcagaaatgaagttgttctaattgccaaattgcagcacaggaacctcgttaaacttcttggctgttgcatacatggagatgagaagctgctaatttatgaatacttgccaaacaaaagcttggaagctttcattttcgtcaagtccgacacatatagctatggtgttatactcttggagattgtaagtggtctgaagattagcttacctcggctgatggactttcccaacctattagcttatgcatggagcttatggaaggatgacaaggccatggatttggtggattcatccattgctgagagttgctaa
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| Protein seq | MTQIINVPRSTLRSFWSSGLFGNNVNAKIFQSESNTPLESGGSFAVPGKSSCLACPKKKNKGQMNMAYLPVNRLISPSGKLVSKSGVFALGFFSPATSNQSLFLGIWYNNIPERTYVWVANRDNPITTPSSAMLAISNSSDLVFGDPSSDLQVFVWHGTKPYYRSIVLDSVWVSGKAYGSSTSFMYQTYVNTQDEFYVIYTTSDGSPYMRIMLDYTGTFRLLSWNVNSSSWAIYSQRPAAIGDCDPYGSCGPFGYCDFTSVIPRCQCPDGFEPNGSNSSSGCRRKQQLRCGEGNHFMTMPGMKLPDKFFYVQDRSFEECAAECSRNCSCTAYAYTNLTITGSPGTTASQSRCLLWVGELVDMARNNLGDNLYLRLADSPGHKKSRYVVKVVVPIIACVLMLTCIYLVWKWISKGEKRNNENQNRAMLGNFRASHEVYEQNQEFPCINFEDVVTATNNFSDSNMLGEGGFGKVYKGKLGGGKEVAVKRLSTGSTQGLEHFTNEVVLIAKLQHKNLVRLLGCCIHGDEKLLIYEYLPNKSLDHFLFDPASKFILDWPTSGYMSPEYAMDGVFSVKSDIYSFGVILLEIVSGLKISLPQLMDFPNLLAYAWRLWKDDKTMDLVDSSIAESCSKNEVLLCIHIGLLCVQDNPNSRPLMSSVVFMLENEQAALPAPIQPVYFAHRASETKQTGENTSSSNNNMSLTEMQGKKESTVMEAATTNIFYRPVIFFSVLLCFQYRAAGVASDTLSNGRNLTDGDTLVSANGSFTLGFFSPGLPSRRYLAIWFSESADAVWVANRDSPLNDTAGVVVIDGTGGLVLLDGAAGQAAWSSNTTGSSPSVAVQLLESGNLVVRDQGSGDVLWQSFDHPSNTLIAGMRLGRNPRTGAEWSLTSWRAPDYPATGGCRRVMDTRGLADCVSWCGAGKKYRTGPWNGLWFSGVPEMASYSSMFANQVVVKPDEIAYVFTAATAAAPFSRLVLSEAGVIQRLVWDPSSKGWNTFAQAPRDVCDDYAKCGAFGLCNVNTASTLFCSCMAGFSPMFPSQWSMRETSGGCRRNAPLECGNGSTTDGFVPVRGVKLPDTDNATVDTGATLDECRARCFANCSCVAYAAADIRGAGGGSGCVMWTGDVIDVRFGDIAAATNNFSDDNMLGQGGFGKGMLGDNKEVAIKRLSKGSGQGVEEFRNEVVLIAKLQHRNLVKLLGCCIHGDEKLLIYEYLPNKSLEAFIFVKSDTYSYGVILLEIVSGLKISLPRLMDFPNLLAYAWSLWKDDKAMDLVDSSIAESC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.037525 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0633300 | RBH | 0.505879 | 0.092444 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g54080 | RBH | 0.264270 | 0.164003 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0633300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027850 | RBH | 0.131562 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028640 | RBH | 0.000000 | 0.0 | 0.127514 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028230 | SBH | 0.369437 | 0.739790 | 2.057186 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028080 | RBH | 0.0 | 0.034373 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028290 | SBH | 28.615248 | 3.884939 | 5.803555 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0507200 | RBH | 1.9603475 | 2.1253495 | 2.8731885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026980 | SBH | 0.129210 | 0.011754 | 0.285752 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0511700 | RBH | 0.7956625 | 2.3567395 | 2.66594 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005080 | SBH | 0.000000 | 0.062137 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027240 | SBH | 0.052717 | 1.409014 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027300 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027920 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027880 | SBH | 0.0 | 0.604004 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027250 | RBH | 0.144768 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027160 | SBH | 0.766234 | 0.0 | 0.641462 |
