Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0616200 | OGI:04041790 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:31263110-31264993 | ||||||||
| Gene Symbol | RLCK159, OsRLCK159 | ||||||||||
| DNA seq | CAGTCCTCGTGCTTCTAATGATGATATTAACAAAAGAATATTTACACAAAAGCAATTGCTACTTTGTTAGCCCTTCATCTGCGTGGTGTGTACTGTGAAAAGGGCACACCCTCTTGCGCATTGGAGGAGAAAAAGGGAAACAAAAGAACAAGGCCAAAGGGAAGGAAATTAAGCAAGCAAAGCGCACGAGGCACGCTCATGAACTCACACCACCTAGGTCAACCCAACAACACGGCTCGACCAAATTCCAGCGAGGAAGCGATGCCCAAACACCTGTAACACCATGTGATCCCGTGCGTGATGCACGGGCATACCAGACTGCTACTACTTCGTTCCAAAATATTGTACCTAGAATGTGATTTGACCGATCCTAAAGATAACGAATCTAGACAATCTCTATTTCGATTCATTATCTTAGGATGAGTTAAATCACATTCTAAATTACAGTATTTTAGAACGGATTGGAGGCAGTAGATGCCTTAGATCGTTCAATCACCTACTCCCTCTTCCTCCTACCCAAGTCAGCAAGTGATGAGACCGCCTTTGTATGAGCCGGGAATTTAGCTCCAAGCCTTCCTTGCCCTGCTTCTCGGTTATCTTCACCTGCCCTCGTCGATGATGGAGGTGAACAATGGCGAGGGAGTCAGCGGGCTGCCTTCCCCTGCGCCCTGGCTACTCGCCTGGCCGGCGCCGCCATCACCGGAGGACGGCGGCGTCGACGCCGAGCCGACCTGGCTGCTGCCCGTGTGGTGGCAGCTCCCGACCTTGATCTGCCACTCCGTGATGTAGCTCGGCTTTGCGGCATCTTCGGTTATGTCGGCGTCTCCGGTGAGCATGGAGACTACCTTCGACATTGGCGGCCGCTTGTGAGGGGAGCCCTGTGTGCAGAGGAGGGCGACGCGGATGACTCTGATCACCTCCTCGCTGTTGAATTCCGAGAGTTTTGGGTCCACGAAGTCGAGCGGGTGCCCGTTTTCATACAGCTCCCAGACCTGAAACATTGAGAATTTTTAGCAAATTATACATTACAGACTTACAGTGTATCGACATGTATGGTTTGCAATGTAAAGGGGAAAAGGATGAATTCAAGGTGCTCTGTGGATGATGAATTCTGGCCTTACCCTTTCAAATATGTAAGTTCTGTCTTCCTCAAGTGTATTCTGGTAGTTTGATTCACCAGCAACAGTCTCCAACGCGACCACGCCGAATGCAAACACATCAACTTTCTCAGTCATATGACCTCTCATGGCATACTCAGGTGCAAGGTAGCCACTGGGCAAAGTGAAGTCGACCAATGGCAGTTAGAACATATCCGTCAATAGCACAGTAACATAGAACAGTCAGGTGATAGATCACTTACAATGTGCCAGCAACTTTTGTGCTGACGTGAGTTTTCTTGTTATCATAGAGCTTGGCAAGCCCAAAATCTGAAATCTTAGGGTTGAGACCGGCATCTAGCAAGACATTACTGGCCTTTATGTCCCTGTGCACGATGCGGACGGTAGAATCCTCGTGAAGATAAGCTATACCTCTTGCTAGGCCTAAGCATATCTCAAATCTTGTTGGCCAATCCAGGTTCAAGCTTCCCTTTCCTGAAGATAAAGTTTGATGTTTTAAAATTTTGGCATTTAAGTAAAATTCCAAGTCATGTAAAACCAAATAAACTTATACCAAACAGTGCTTGGTCAAGGCTTCCATTCTCCAGATACTCATAAACCAACAGCGGCGTATTGCTCTCAAGGCAGCAACCATACAATGTCACGAGGTTACAGTGTTGTACTCGAGATATAGTTTCGATTTCTGTAGCAAATTGCTTTTTCCCCTGATTAGATGACTGAGAGAGCTGCTTCACTGCCACCGCCCTTCCATCACTTAATCTACCCT
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| CDS seq | GGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCATCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACACTGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTATGAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTGGATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCACGAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGATGCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAAACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGACATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGCTGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGATGGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCGCCATTGTTCACCTCCATCATCGACGAGGGCAGGTGA
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| Protein seq | GRLSDGRAVAVKQLSQSSNQGKKQFATEIETISRVQHCNLVTLYGCCLESNTPLLVYEYLENGSLDQALFGKGSLNLDWPTRFEICLGLARGIAYLHEDSTVRIVHRDIKASNVLLDAGLNPKISDFGLAKLYDNKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFGVVALETVAGESNYQNTLEEDRTYIFERVWELYENGHPLDFVDPKLSEFNSEEVIRVIRVALLCTQGSPHKRPPMSKVVSMLTGDADITEDAAKPSYITEWQIKVGSCHHTGSSQVGSASTPPSSGDGGAGQASSQGAGEGSPLTPSPLFTSIIDEGR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 [UniProtKB/Swiss-Prot:C0LGH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0616200 | OsNip_04t0616200-01 | Chr04 | 31263110 | 31264993 | - | RAP2018-11-26 | ||
| CDS seq | GGTAGATTAAGTGATGGAAGGGCGGTGGCAGTGAAGCAGCTCTCTCAGTCATCTAATCAGGGGAAAAAGCAATTTGCTACAGAAATCGAAACTATATCTCGAGTACAACACTGTAACCTCGTGACATTGTATGGTTGCTGCCTTGAGAGCAATACGCCGCTGTTGGTTTATGAGTATCTGGAGAATGGAAGCCTTGACCAAGCACTGTTTGGAAAGGGAAGCTTGAACCTGGATTGGCCAACAAGATTTGAGATATGCTTAGGCCTAGCAAGAGGTATAGCTTATCTTCACGAGGATTCTACCGTCCGCATCGTGCACAGGGACATAAAGGCCAGTAATGTCTTGCTAGATGCCGGTCTCAACCCTAAGATTTCAGATTTTGGGCTTGCCAAGCTCTATGATAACAAGAAAACTCACGTCAGCACAAAAGTTGCTGGCACATTTGGCTACCTTGCACCTGAGTATGCCATGAGAGGTCATATGACTGAGAAAGTTGATGTGTTTGCATTCGGCGTGGTCGCGTTGGAGACTGTTGCTGGTGAATCAAACTACCAGAATACACTTGAGGAAGACAGAACTTACATATTTGAAAGGGTCTGGGAGCTGTATGAAAACGGGCACCCGCTCGACTTCGTGGACCCAAAACTCTCGGAATTCAACAGCGAGGAGGTGATCAGAGTCATCCGCGTCGCCCTCCTCTGCACACAGGGCTCCCCTCACAAGCGGCCGCCAATGTCGAAGGTAGTCTCCATGCTCACCGGAGACGCCGACATAACCGAAGATGCCGCAAAGCCGAGCTACATCACGGAGTGGCAGATCAAGGTCGGGAGCTGCCACCACACGGGCAGCAGCCAGGTCGGCTCGGCGTCGACGCCGCCGTCCTCCGGTGATGGCGGCGCCGGCCAGGCGAGTAGCCAGGGCGCAGGGGAAGGCAGCCCGCTGACTCCCTCGCCATTGTTCACCTCCATCATCGACGAGGGCAGGTGA
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| Protein seq | GRLSDGRAVAVKQLSQSSNQGKKQFATEIETISRVQHCNLVTLYGCCLESNTPLLVYEYLENGSLDQALFGKGSLNLDWPTRFEICLGLARGIAYLHEDSTVRIVHRDIKASNVLLDAGLNPKISDFGLAKLYDNKKTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFGVVALETVAGESNYQNTLEEDRTYIFERVWELYENGHPLDFVDPKLSEFNSEEVIRVIRVALLCTQGSPHKRPPMSKVVSMLTGDADITEDAAKPSYITEWQIKVGSCHHTGSSQVGSASTPPSSGDGGAGQASSQGAGEGSPLTPSPLFTSIIDEGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.268129 | 0.0 | 0.751533 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0616700 | SBH | 0.624029 | 1.393519 | 3.514091 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52590 | SBH | 0.084835 | 0.000000 | 0.247825 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0616200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026550 | RBH | 1.560633 | 45.491142 | 3.982231 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0027330 | RBH | 0.201818 | 13.705239 | 1.665446 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0027070 | SBH | 4.737163 | 31.328411 | 8.384205 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | SBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027040 | RBH | 3.099421 | 7.380616 | 2.684844 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0493100 | SBH | 3.2457925 | 28.794131 | 4.519752 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025870 | SBH | 0.074286 | 0.243259 | 0.219068 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0497100 | SBH | 5.1998375 | 90.3632885 | 9.530799 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0026280 | SBH | 0.388759 | 0.306683 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0026110 | SBH | 0.164607 | 18.463884 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0026140 | SBH | 0.0 | 2.241474 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026620 | SBH | 1.068267 | 0.108958 | 0.231745 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026800 | SBH | 0.040776 | 1.921849 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026010 | SBH | 0.146387 | 0.396267 | 0.890258 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025890 | SBH | 5.244827 | 65.479820 | 3.933135 |
