Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_07g0023930 | OGI:01039680 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr07:25573515-25576867 | ||||||||
| Gene Symbol | IBP | ||||||||||
| DNA seq | gaagcagggataatagcatgaccctgaaactgaagttcaaacataaactgccacacacataatgttgtccgtctgaaattaggaccatactatatcacacatactgccgcacacatagacactgaacttcgacacagactctagactctgaagtctgaacatttagaacagaactgaacacacagacactggacgctgaacattcagaaactaaactacgctacgagctgaacttctagatattgcaacgtcgagcgagaatctcgttctgacgccattcataatatttctgctgattgtagttcattgtgctcaaatccaaaccgagaattctctcctcttccaccttctcagccttctcagcttctttcttctggaactcaaacttttctatctccaatttgttccattcttcctgcagagcaaaggctctcttgcacctctcttcctgcaaagcaaaggctttcttgcacatctcttctttcttcaactctctcacaacatcagcttctttcttcttttccatcagatagtccactgcttctatggttctaccctgtcgtagcttctgttttgccgccttctttccatccggtcttacagatggttgagcatcagaataatagatttcaagatcagcaggttcaactgatgcatgacttgaatttgccgttgtcttctgtttcttattgcttggttttttggcacatccaactttcttccgattgtccatccactcaggcttgtccttcaggatattccagcaatgcatcaagttaaacttcctatgcttcttgtcttcctccttaaacaattcacatgcatttgcaatctgcacatttgaaaccaaaataaacatgagaactaaaaactgcgacaaataatcataccacagaaataatgtgtttaccttgtcatcaactctagaaccactctggttcctaccctctattctggacatacatccacagaaaatattcacatcatgttgtattgcggaccaacgattcaataaagaggattcagaacgtgttgactcaaactctttgttggcatgaaaatattcatgtattcctgcccaatatgtgccttgtgattgatctactccttgaataggatccatgcccacattcaaccaagctgacacaagaaggatgtcctcttgagtagtgaaatttttggtcctaccctgagaactcttggcagctgttggagctccattggagattggatcactagtaggtgtgacaaattgagattcatcaacatcatttactaggaggtcaatgaaataacatgattgcgtactatctgtcacaggaaaataaatggagaataaacatcatgtaggattgtaagccggcaataggaaaagcaactacaccactggttccattcaacatctcagggcatgggaagctcaagatttgcatgggaactctggctgaataacatgatatgcaaaccagacaattgtagtaatgtaactactatcgagctgaataaaattatatgcaatgtggacatttgcagcaatgtaaataacagagtattatccttttaatttacctactctcttgtaattgtaaactatcttattttgtagaaattattgtgatgtgaatgcaggatggaagatttagagcaaaaagagactcagggtaggtcctgtttatttacttgcaaagaagaagcaatttgatctagatgaatctttcattcaaatgtactgtactaacaagcagctactctggtcaagtgcgaagaaagacagcaattttatttccagaaacctacaaccaacatgaatgcaatcccaaaatcctcaggtagaatacagcacaagctaaacttcctgtgatccagtcatccaactaacaacaaagggtttgacagacgtagatagtgagtctcacctgtgcagacctcctcatcagtgacttgctcaccgatgaacagaccttgtgccttccaaccatcgacgcctattggaggaaccacccgatggcgcatcgatccaatacccgactgatccaagtccccttccggcgatgagcatcctgatccaagtccctagccgccgttgaagcaggacgcagcagcctccacatggcaagacgaaggccggggccggagcggcgcgacggctgaagggcgggggtgctagacggcgggaccgacgacggcgcgggacggcgagggcgtgggacggcgggacaggtgcgacggcgtagcacggcgggagggcgtgacgacgggaccgattgggctggtgcgcgcgggcgggaaacgagcgcatgcgcgggagagaggcgattgcgagcgagatggccactgcaaatatgcaggacgaggggcgacggatgccgaatgggatcgcgagcggagcgagataccgagtgtgttggaccccggttttgactcgTtttttttttttttttaccgatccaaaccagatagctagattgttggagttgctctaaacgtgcattacgcaaaaccaatgaaaaagatgtatatttcctttctttttcaaaataaagaggtaaccacgctgaagttcatacaaccagccaaacataatcttcttcatgtactatatttcatacaagcaactaaacaacacctatctaagttacttgaaaagagcgcaacatctgtaaaaaacctctataggtgccggttgaaaaccgacaataggtgccagtttcccagtcaaaaagtagccggctccaagccgagccgatgcgcatcaataatccccattcaagaatgctttcacaaatcacaaatcaagcagatgaacaacaatcaagcagtccctaatccaatccatcatcaatcacaaatatgaacaacaataattccaattcaagcagtccctaatccaattcatcaccaatcacagatatgaacacaataatctccatcacaaattagcaacaacaaacaacaatatttcccatcacagatgaagaacataagcgagatgcacaaactcactcgtcaatccgccaaggtcgccgccggggtccctctccacgcgaggtcgctgccagccgctgggtccctctccatgcaaggtcgctgccaaggtccctcattgcgggaggtcgccgccggccgccgggtccctcttcgcgcggaggtcgccgcacccatccctctccgtgctgaggtcgccgccggtgggaggccgacggagagggcgacgctgctcgccggctgggagaggagggcggagggggagggggagggggagggtagggcggcggatcagaggaggaggcgagaggggaggggggcggagggcgcggtggaggagaggcgattggagaagtgcgcgagtggat
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| CDS seq | atgagggaccttggcagcgaccttgcatggagagggacccagcggctggcagcgacctcgcgtggagagggaccccggcggcgaccttggcggattgacgatgatccaatctccaatggagctccaacagctgccaagagttctcagggtaggaccaaaaatttcactactcaagaggacatccttcttgtgtcagcttggttgaatgtgggcatggatcctattcaaggagtagatcaatcacaaggcacatattgggcaggaatacatgaatattttcatgccaacaaagagtttgagtcaacacgttctgaatcctctttattgaatcgttggtccgcaatacaacatgatgtgaatattttctgtggatgtatgtccagaatagagggtaggaaccagagtggttctagagttgatgacaagattgcaaatgcatgtgaattgtttaaggaggaagacaagaagcataggaagtttaacttgatgcattgctggaatatcctgaaggacaagcctgagtggatggacaatcggaagaaagttggatgtgccaaaaaaccaagcaataagaaacagaagacaacggcaaattcaagtcatgcatcagttgaacctgctgatcttgaaatctattattctgatgctcaaccatctgtaagaccggatggaaagaaggcggcaaaacagaagctacgacagggtagaaccatagaagcagtggactatctgatggaaaagaagaaagaagctgatgttgtgagagagttgaagaaagaagagatgtgcaagaaagcctttgctttgcaggaagagaggtgcaagagagcctttgctctgcaggaagaatggaacaaattggagatagaaaagtttgagttccagaagaaagaagctgagaaggctgagaaggtggaagaggagagaattctcggtttggatttgagcacaatgaactacaatcagcagaaatattatgaatggcgtcagaacgagattctcgctcgacgttgcaatatctag
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| Protein seq | MRDLGSDLAWRGTQRLAATSRGEGPRRRPWRIDDDPISNGAPTAAKSSQGRTKNFTTQEDILLVSAWLNVGMDPIQGVDQSQGTYWAGIHEYFHANKEFESTRSESSLLNRWSAIQHDVNIFCGCMSRIEGRNQSGSRVDDKIANACELFKEEDKKHRKFNLMHCWNILKDKPEWMDNRKKVGCAKKPSNKKQKTTANSSHASVEPADLEIYYSDAQPSVRPDGKKAAKQKLRQGRTIEAVDYLMEKKKEADVVRELKKEEMCKKAFALQEERCKRAFALQEEWNKLEIEKFEFQKKEAEKAEKVEEERILGLDLSTMNYNQQKYYEWRQNEILARRCNI |
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| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0023930 | OsNaBo_07g0023930.01 | Chr07 | 25573576 | 25576867 | - | NAM | ||
| CDS seq | atggatcctattcaaggagtagatcaatcacaaggcacatattgggcaggaatacatgaatattttcatgccaacaaagagtttgagtcaacacgttctgaatcctctttattgaatcgttggtccgcaatacaacatgatgtgaatattttctgtggatgtatgtccagaatagagggtaggaaccagagtggttctagagttgatgacaagattgcaaatgcatgtgaattgtttaaggaggaagacaagaagcataggaagtttaacttgatgcattgctggaatatcctgaaggacaagcctgagtggatggacaatcggaagaaagttggatgtgccaaaaaaccaagcaataagaaacagaagacaacggcaaattcaagtcatgcatcagttgaacctgctgatcttgaaatctattattctgatgctcaaccatctgtaagaccggatggaaagaaggcggcaaaacagaagctacgacagggtagaaccatagaagcagtggactatctgatggaaaagaagaaagaagctgatgttgtgagagagttgaagaaagaagagatgtgcaagaaagcctttgctttgcaggaagagaggtgcaagagagcctttgctctgcaggaagaatggaacaaattggagatagaaaagtttgagttccagaagaaagaagctgagaaggctgagaaggtggaagaggagagaattctcggtttggatttgagcacaatgaactacaatcagcagaaatattatgaatggcgtcagaacgagattctcgctcgacgttgcaatatctag
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| Protein seq | MDPIQGVDQSQGTYWAGIHEYFHANKEFESTRSESSLLNRWSAIQHDVNIFCGCMSRIEGRNQSGSRVDDKIANACELFKEEDKKHRKFNLMHCWNILKDKPEWMDNRKKVGCAKKPSNKKQKTTANSSHASVEPADLEIYYSDAQPSVRPDGKKAAKQKLRQGRTIEAVDYLMEKKKEADVVRELKKEEMCKKAFALQEERCKRAFALQEEWNKLEIEKFEFQKKEAEKAEKVEEERILGLDLSTMNYNQQKYYEWRQNEILARRCNI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0023930 | OsNaBo_07g0023930.02 | Chr07 | 25573515 | 25576864 | - | NAM | ||
| CDS seq | atgagggaccttggcagcgaccttgcatggagagggacccagcggctggcagcgacctcgcgtggagagggaccccggcggcgaccttggcggattgacgatgatccaatctccaatggagctccaacagctgccaagagttctcagggtaggaccaaaaatttcactactcaagaggacatccttcttgtgtcagcttggttgaatgtgggcatggatcctattcaaggagtagatcaatcacaaggcacatattgggcaggaatacatgaatattttcatgccaacaaagagtttgagtcaacacgttctgaatcctctttattgaatcgttggtccgcaatacaacatgatgtgaatattttctgtggatgtatgtccagaatagagggtaggaaccagagtggttctagagttgatgacaagattgcaaatgcatgtgaattgtttaaggaggaagacaagaagcataggaagtttaacttgatgcattgctggaatatcctgaaggacaagcctgagtggatggacaatcggaagaaagttggatgtgccaaaaaaccaagcaataagaaacagaagacaacggcaaattcaagtcatgcatcagttgaacctgctgatcttgaaatctattattctgatgctcaaccatctgtaagaccggatggaaagaaggcggcaaaacagaagctacgacagggtagaaccatagaagcagtggactatctgatggaaaagaagaaagaagctgatgttgtgagagagttgaagaaagaagagatgtgcaagaaagcctttgctttgcaggaagagaggtgcaagagagcctttgctctgcaggaagaatggaacaaattggagatagaaaagtttgagttccagaagaaagaagctgagaaggctgagaaggtggaagaggagagaattctcggtttggatttgagcacaatgaactacaatcagcagaaatattatgaatggcgtcagaacgagattctcgctcgacgttgcaatatctag
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| Protein seq | MRDLGSDLAWRGTQRLAATSRGEGPRRRPWRIDDDPISNGAPTAAKSSQGRTKNFTTQEDILLVSAWLNVGMDPIQGVDQSQGTYWAGIHEYFHANKEFESTRSESSLLNRWSAIQHDVNIFCGCMSRIEGRNQSGSRVDDKIANACELFKEEDKKHRKFNLMHCWNILKDKPEWMDNRKKVGCAKKPSNKKQKTTANSSHASVEPADLEIYYSDAQPSVRPDGKKAAKQKLRQGRTIEAVDYLMEKKKEADVVRELKKEEMCKKAFALQEERCKRAFALQEEWNKLEIEKFEFQKKEAEKAEKVEEERILGLDLSTMNYNQQKYYEWRQNEILARRCNI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_07g0023930 | OsNaBo_07g0023930.03 | Chr07 | 25575957 | 25576867 | - | IsoSeq | ||
| CDS seq | atccactcgcgcacttctccaatcgcctctcctccaccgcgccctccgcccccctcccctctcgcctcctcctctgatccgccgccctaccctccccctccccctccccctccgccctcctctcccagccggcgagcagcgtcgccctctccgtcggcctcccaccggcggcgacctcagcacggagagggatgggtgcggcgacctccgcgcgaagagggacccggcggccggcggcgacctcccgcaatgagggaccttggcagcgaccttgcatggagagggacccagcggctggcagcgacctcgcgtggagagggaccccggcggcgaccttggcggattgac
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| Protein seq | IHSRTSPIASPPPRPPPPSPLASSSDPPPYPPPPPPPPPSSPSRRAASPSPSASHRRRPQHGEGWVRRPPREEGPGGRRRPPAMRDLGSDLAWRGTQRLAATSRGEGPRRRPWRID |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 25574749 | 25576518 | - | OsNaBo_07g0023930.01 | OsNaBo_07g0023930.02,OsNaBo_07g0023930.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.431509 | 30.768583 | 7.627371 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0554400 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42560 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0554400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0019140 | SBH | 0.120401 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0019030 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020360 | SBH | 0.252479 | 0.294502 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026250 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0451800 | RBH | 0 | 0 | 0.0648805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026740 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0464200 | RBH | 0 | 0 | 0.0106175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0012570 | SBH | 0.033126 | 0.061632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026450 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026100 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0012800 | SBH | 0.339969 | 0.193334 | 0.414792 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018870 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023910 | RBH | 2.711512 | 0.0 | 2.050939 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023360 | RBH | 0.0 | 0.0 | 0.0 |
