Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0554400 | OGI:01039680 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:22077208-22078130 | ||||||||
| Gene Symbol | IBP | ||||||||||
| DNA seq | ACGACTTAAAATACTAGTCTTGACACTTTTATAGTACTCTTGCTCCTCGATTGACATCGCACTTGTATCTAGCCTCAGAAGTCTATCTTCTTCTATCATCCTCTTAAAATCCAACTTTTCTTTCTCCAAATTAATCCGTTGTTGTTCAAGTGCAAGTGCAGCTCTGTACCTCTCCTCTCTTTGGCGCTCCTTCTCAGCATCGGCCTCTTTCTTCTTAGCCCATAAATGATCCAAAGCATCAATTTTGGATTGATCTGAGCGTTGACGCTGTTTTTCTCTCTTTCTTCCTCCCTGCAGGTCTTCCCGAAGGCTGCACAGCATCAACTGCAATAGGGTCCTCTTTCTCTTGAGGGACACAGTTCTGAGGACCTGAAGGTGCAGACGTAGCAGGTGTAGACTGCACATTGGTCTTCTGCTTCTTATTTGCATTATTTTGACCTGCCTTGTGAATTCACCAATCAATCCACTTTGGCTGATCCTTCAAATATTTGTAGCAATGCATGAACTGAAAAGTCCTGTTTTTTTCGTCTTCCTTCGTATACAACAGCCCAGCCTGCAAAAGCTGAAAAAAGAATTGCAAAACAAAGTTAGGCTAAAAAGTTAACAAATAAATGATTACTAACAATAACATATAAAATAGATTAATTTTCACCTTGTCCTCAGCATTGGCACCACTTTGAGGTCTATTCTCGATACGACTTACACAACCAGCAAACGTATTGAGACACTCTTGTATAGTGGACCAACGATGCATGAGCGAATTTTGGGAGCGATCTGAACTAAAGTATTTGTTTGCATGAAAAAAATCACAAATACGGTTCCAGTACGCACTCCGAGATTGATCGGCACCTTGAATAGCATCCATACTAACATTGACCCATGCTGACACCAACAAGACATCCTCCTGCATACTAAAATTCTTG
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| CDS seq | ATGCAGGAGGATGTCTTGTTGGTGTCAGCATGGGTCAATGTTAGTATGGATGCTATTCAAGGTGCCGATCAATCTCGGAGTGCGTACTGGAACCGTATTTGTGATTTTTTTCATGCAAACAAATACTTTAGTTCAGATCGCTCCCAAAATTCGCTCATGCATCGTTGGTCCACTATACAAGAGTGTCTCAATACGTTTGCTGGTTGTGTAAGTCGTATCGAGAATAGACCTCAAAGTGGTGCCAATGCTGAGGACAAGGTGAAAATTAATCTATTTTATATGTTATTGTTAGAAGACGAAAAAAACAGGACTTTTCAGTTCATGCATTGCTACAAATATTTGAAGGATCAGCCAAAGTGGATTGATTGGTGA |
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| Protein seq | MQEDVLLVSAWVNVSMDAIQGADQSRSAYWNRICDFFHANKYFSSDRSQNSLMHRWSTIQECLNTFAGCVSRIENRPQSGANAEDKVKINLFYMLLLEDEKNRTFQFMHCYKYLKDQPKWIDW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0554400 | OsNip_07t0554400-00 | Chr07 | 22077208 | 22078130 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGGAGGATGTCTTGTTGGTGTCAGCATGGGTCAATGTTAGTATGGATGCTATTCAAGGTGCCGATCAATCTCGGAGTGCGTACTGGAACCGTATTTGTGATTTTTTTCATGCAAACAAATACTTTAGTTCAGATCGCTCCCAAAATTCGCTCATGCATCGTTGGTCCACTATACAAGAGTGTCTCAATACGTTTGCTGGTTGTGTAAGTCGTATCGAGAATAGACCTCAAAGTGGTGCCAATGCTGAGGACAAGGTGAAAATTAATCTATTTTATATGTTATTGTTAGAAGACGAAAAAAACAGGACTTTTCAGTTCATGCATTGCTACAAATATTTGAAGGATCAGCCAAAGTGGATTGATTGGTGA
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| Protein seq | MQEDVLLVSAWVNVSMDAIQGADQSRSAYWNRICDFFHANKYFSSDRSQNSLMHRWSTIQECLNTFAGCVSRIENRPQSGANAEDKVKINLFYMLLLEDEKNRTFQFMHCYKYLKDQPKWIDW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g36860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0554400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0360600 | RBH | 0.023554 | 0.0108665 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0372600 | RBH | 0.040328 | 0 | 0.2445995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0012570 | RBH | 0.033126 | 0.061632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0012600 | RBH | 0.0 | 1.053792 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0012550 | RBH | 1.305839 | 5.697458 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0012600 | RBH | 0.098635 | 4.618469 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023910 | RBH | 2.711512 | 0.0 | 2.050939 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023930 | RBH | 8.431509 | 30.768583 | 7.627371 |
