Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0012800 | OGI:01039680 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:14632625-14634437 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgagcaggacttctgatttcgcccttccaaaaccgcgctcccaccctagtatttccgtctcctaggccactacctcctctttcgcacgcttggttttttcctccgttccatcgtcggctccactcccgcctcgccatcgccgccctgaagccccaatccagggcgacctccccgtagccgactgttttttcccggtcgccatccccttcggagaaGcggccagtcgaggtctccgtcgctgccgcgaggtgagcaaatcctagccctaattcctattgattgggtacttgattcgatctatccATcaaattgcaatccCtatgcgcagatggatctgaagttggcaaacgcttttgcacgttttcttcaagatccaggcgccgcggcggtgctttcccagttgctgagccagccagcgtcAttgcctcctcttccggcgttcccgtgctcccttctaccattcccgccgttctgcAcccagccaccgccgccttcatcttcagccccaccggcaattagtgcagagacggacacactgggttcaacgggcaagaaggcaactccaagttcgggaccggcggctggctctgcagcgacgtgcaagccatccttgagctcgagagtaggatgccggcaccatgtgacagcaacccctactcctgcccCtgcccctggacctgaagatgagtcgggtggcaagaccggcaaggagttatacagtcacgaagaaGAtatcagactggtaagaaattgtactttTaggtttaagttgacgatacaattgtgtatgattaatcgatgccaactagaattgattatagttttgtctaaaactttggtagtgtggtgatgccaacaataattgtggagtttaggtttcaatcgattgtagtgatgtgtaaaAttatgagagattactgcatatagagaagtggaatgttgctaagaATgtggaaTaattaagctcttataacagtgaattTgggatgtgcactatgaagggtattgtttttctgtttTgatatagccccaacacttgatgattTctggatTactgccattgtttactctgtagaaaggatatttgctagacgtacttaagTgtggatttcaggcagtgatttgtagactgttgagaacttgctgcacatagagaaactaaatcAtgttagggatggggatttattaatcgattatagtagtgtttgtgctgtacaaatgtgaatgatgactgcatgtagttaagagtgaaaattataacaagatttatattgcagctgattgtaaAcataagtaatcatttcatatgggttgaagctataatgctagaaatttcttatccatttaggtgagtgcttggcttaagtgttcaactgatcccattGttggagtgaatatgaagggtgaggcctactggcataatgtggcAgatacttataatgagacaacaccggaaggaaggaagagtgaggctgcatgtctcaaaggacattggcacaAgataacacccaaggtgacattgtTcaatggatgctatgtgcaacttagggatgaatatgtaagtgggaggaatgatgaaaAgctgatggacgatgctttagcgctctatatcacccGatcgaagaagaacaaacccttcctctatcttcatggGtggaaggctgtttgtgactccccgaagtggagttcacaatatggaggtgggaataagagggtAtgtccagatctgaacatgaAtgcaccgcatgtgccgctgcctcgtcccattggtataaAgagggcaaagaaagggatggcatgCtttagataa
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| CDS seq | atgcgagcaggacttctgatttcgcccttccaaaaccgcgctcccaccctagccactacctcctctttcgcacgcttggttttttcctccgttccatcgtcggctccactcccgcctcgccatcgccgccctgaagccccaatccagggcgacctccccgtagccgactgttttttcccggtcgccatccccttcggagaaGcggccagtcgaggtctccgtcgctgccgcgagatggatctgaagttggcaaacgcttttgcacgttttcttcaagatccaggcgccgcggcggtgctttcccagttgctgagccagccagcgtcAttgcctcctcttccggcgttcccgtgctcccttctaccattcccgccgttctgcAcccagccaccgccgccttcatcttcagccccaccggcaattagtgcagagacggacacactgggttcaacgggcaagaaggcaactccaagttcgggaccggcggctggctctgcagcgacgtgcaagccatccttgagctcgagagtaggatgccggcaccatgtgacagcaacccctactcctgcccCtgcccctggacctgaagatgagtcgggtggcaagaccggcaaggagttatacagtcacgaagaaGAtatcagactggtgagtgcttggcttaagtgttcaactgatcccattGttggagtgaatatgaagggtgaggcctactggcataatgtggcAgatacttataatgagacaacaccggaaggaaggaagagtgaggctgcatgtctcaaaggacattggcacaAgataacacccaaggtgacattgtTcaatggatgctatgtgcaacttagggatgaatatgtaagtgggaggaatgatgaaaAgctgatggacgatgctttagcgctctatatcacccGatcgaagaagaacaaacccttcctctatcttcatggGtggaaggctgtttgtgactccccgaagtggagttcacaatatggaggtgggaataagagggtAtgtccagatctgaacatgaAtgcaccgcatgtgccgctgcctcgtcccattggtataaAgagggcaaagaaagggatggcatgCtttagataa
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| Protein seq | MRAGLLISPFQNRAPTLATTSSFARLVFSSVPSSAPLPPRHRRPEAPIQGDLPVADCFFPVAIPFGEAASRGLRRCREMDLKLANAFARFLQDPGAAAVLSQLLSQPASLPPLPAFPCSLLPFPPFCTQPPPPSSSAPPAISAETDTLGSTGKKATPSSGPAAGSAATCKPSLSSRVGCRHHVTATPTPAPAPGPEDESGGKTGKELYSHEEDIRLVSAWLKCSTDPIVGVNMKGEAYWHNVADTYNETTPEGRKSEAACLKGHWHKITPKVTLFNGCYVQLRDEYVSGRNDEKLMDDALALYITRSKKNKPFLYLHGWKAVCDSPKWSSQYGGGNKRVCPDLNMNAPHVPLPRPIGIKRAKKGMACFR |
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| Function | Glutathione S-transferase T3 [UniProtKB/Swiss-Prot:Q9FHE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0012800 | OsLiXu_07g0012800.01 | Chr07 | 14632625 | 14634437 | + | NAM | ||
| CDS seq | atgcgagcaggacttctgatttcgcccttccaaaaccgcgctcccaccctagccactacctcctctttcgcacgcttggttttttcctccgttccatcgtcggctccactcccgcctcgccatcgccgccctgaagccccaatccagggcgacctccccgtagccgactgttttttcccggtcgccatccccttcggagaaGcggccagtcgaggtctccgtcgctgccgcgagatggatctgaagttggcaaacgcttttgcacgttttcttcaagatccaggcgccgcggcggtgctttcccagttgctgagccagccagcgtcAttgcctcctcttccggcgttcccgtgctcccttctaccattcccgccgttctgcAcccagccaccgccgccttcatcttcagccccaccggcaattagtgcagagacggacacactgggttcaacgggcaagaaggcaactccaagttcgggaccggcggctggctctgcagcgacgtgcaagccatccttgagctcgagagtaggatgccggcaccatgtgacagcaacccctactcctgcccCtgcccctggacctgaagatgagtcgggtggcaagaccggcaaggagttatacagtcacgaagaaGAtatcagactggtgagtgcttggcttaagtgttcaactgatcccattGttggagtgaatatgaagggtgaggcctactggcataatgtggcAgatacttataatgagacaacaccggaaggaaggaagagtgaggctgcatgtctcaaaggacattggcacaAgataacacccaaggtgacattgtTcaatggatgctatgtgcaacttagggatgaatatgtaagtgggaggaatgatgaaaAgctgatggacgatgctttagcgctctatatcacccGatcgaagaagaacaaacccttcctctatcttcatggGtggaaggctgtttgtgactccccgaagtggagttcacaatatggaggtgggaataagagggtAtgtccagatctgaacatgaAtgcaccgcatgtgccgctgcctcgtcccattggtataaAgagggcaaagaaagggatggcatgCtttagataa
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| Protein seq | MRAGLLISPFQNRAPTLATTSSFARLVFSSVPSSAPLPPRHRRPEAPIQGDLPVADCFFPVAIPFGEAASRGLRRCREMDLKLANAFARFLQDPGAAAVLSQLLSQPASLPPLPAFPCSLLPFPPFCTQPPPPSSSAPPAISAETDTLGSTGKKATPSSGPAAGSAATCKPSLSSRVGCRHHVTATPTPAPAPGPEDESGGKTGKELYSHEEDIRLVSAWLKCSTDPIVGVNMKGEAYWHNVADTYNETTPEGRKSEAACLKGHWHKITPKVTLFNGCYVQLRDEYVSGRNDEKLMDDALALYITRSKKNKPFLYLHGWKAVCDSPKWSSQYGGGNKRVCPDLNMNAPHVPLPRPIGIKRAKKGMACFR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.339969 | 0.193334 | 0.414792 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0020360 | RBH | 0.252479 | 0.294502 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0012570 | RBH | 0.033126 | 0.061632 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0012600 | RBH | 0.0 | 1.053792 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0012550 | RBH | 1.305839 | 5.697458 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0012600 | RBH | 0.098635 | 4.618469 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G012580 | RBH | 0.0 | 1.746913 | 0.693214 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0012420 | RBH | 0.000000 | 3.302460 | 1.912559 |
