Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0017880 | OGI:06008910 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:20157863-20162464 | ||||||||
| Gene Symbol | OsFbox297, Os_F0442, OsFbox328, Os_F0254 | ||||||||||
| DNA seq | acagcaaaccaaagccctaattcccaaatcggccaaaccctaaccagaggaccgaggacgtgcgcggtgtggcggcgaggacgtgcggcagtgcggcggcggcgacttccggctgcgtcggcggaaggcggcgccaaggcgggtaggagcctaggcagcgcgtcgggcggcggcgactgcagtctagtctgcagcgtgctcgtcggcggctgcggcagaggcttccggctgcggcgtgcgcggctgcgtcggcggcaggaggcgccgaggcgtgcaggcggcgcgtcgacggctgcggccgtgcggcgttggggctcggccaggcgtgcaggccgccagtccaccaggccaccacacaggtacgcgatgcggcagccgaacgaccacggcttgccggcctggcatggattgcgtgaggggcttgattcattgattcattgcattgatttgttctaggtagttcaatagtagttatgttttccggtggcgacggcttgtttcattgatttgttctatagtagttcaatagttcactagcaccgaaggattcaacttcctcagttcctgtcttctttatttttcagagtgttaactgttaagtgtatatttattgacagattgatagtataaagctgtaaatattaggaatttagataacttagaaccataaTatttaattttcagtgtgttaaatttatatatatgatgatagtatgaggctatatatgagctgttgttaggaatttagagaatttagagagggtgttttcttcgatgaacTAtataaaaacaagaagcaagatgagcaacaatctacatttattggaagagaattttttgtacaagttaaaggatgaggacatcatcactcaTttttaaaatatcaagcattgaaaagttctcctctaaattgtaagttttttttatcattttaccattttctatcctttacatgttatatatgttgccactttcatatgtcgaacaattagtacttatatatgttaaagaatttggacttatgatcaattctatcaatttataaagttatggccatatgctataatattatacaattagtaatgtgtaatattataccaattaattattggacttctagaagTaaaaagaattttgttttacccctacctatttcgaatacccaacctctaaatcctgggcccgccactggatcataatccaacggccaggtccaggtgactgaaatgtgcctagcgaatcctaacatattcgttctttggccccggcgatgagtagcaagtttattactctctccgtttcaggttataaaacattttgactttggtcaaagacaaactgtttcaagtttaactaagttagtttcatcaaatcaataattgaatatatttttataataaatttatcttgggttgaaaatgttactacctttttctacaaacttgatcgaacttaaaacaatttgactttaaccaaagtcaccaaagtcaaaacgtcttataacctaaaacggagggagggagtacatgccaagttgttgtgaattccttgcggataataaaagtcatcatcagtaattctatatttttcatatatatccaaacattatttcttttatcagttctacacatacttattgtggtatcagtgctttgatgagacggataccatcctatggtcgtgtatcagaataattaggaaagcctagtgctaaaagctcgaatacctatcctaaaatttctgggaccctgcttgaaaaccaagattttgtctcaattcagactgaaaatattttacacagtgaagaaaaattgtgcagaaaccaaacgtaaactagatggatcatgcattgtttcagcaccttctaattagctagttgtcttgaacagtacactccttgattcttctgtatttccacttattgttccaattccatggataacagaggaaagtaaccttgttgcattcggcatagaaatgggtaacaatttaatacaccaaagaaaactacaagatcgtggccatggtaaacaaatcgatgagaatgcaagaccaggtgtaaggcttgaagaccttccatgggtatgttcatcttaacttcttttctgtttgagtgttgggtagaaatgggatttatttataatctccaaatgtatgtgatgcatttgctgcaggaccttgtagtatacaaaattttatctaaataccactgaaagaggctgcaaaaactagtgttttgtctaccaagtggaggtgcatctggttgacgtgccccagattgtgttttgatggtcttgcgatgttcaaatgcgaaaggggtgaactgttcttacacgctcggcaattcattgctcaggttaatgctgttttgcaaaaataccagggagaagtggttgaggaatttcatatcagatttgattttcacagcataccagctcattatcttgataattgggttatcttttccttgtcatctaagatgaagaatctagctttagatctgcaaaccaatgatattgaacgatatcctgcacgctacaaattcccctttgaacttttggacagtggaagcttgtccggtctacaacatgtgcagttcagttttgtatctatcaaaccaccttccaagttcagaggtttccctaacctgagaaagcttgatctgcaacttctagatgcctcttcaaaggattttgaaactatgctgtcaaattgcaaacttcttgaatggctaagcatggacagatgccgcctgaatggtgaacttagggtaggtagtccattgccccgtctggtatacctacaagttgtgtactgccaagtaaccaagatacaattccatgctgtggagctagctaattttgtatataaaggagactttgtgcccatagccctcaagcattcgttgaagctggaaaatgcaaacatcaggttatatagtttgaatgatcggcatgctatcagtgacctggtaaaatgttttccgaacttgcaaaatctgaattttcacctttcttggaacgatgcagaggtttgttctcagaaactaaccctccatgctacagttttagcttgtttaacataatctagtgaatgatctttgtccttttgttttccagactaagttgttatcagatacaccttggaagttttctcatctcaggtacttgcggttgaaaaactttgcagattctgggatcgtggagacggatttttttgtctcttttctcagggctgctccttttattgagaagttagagatccatgtaagtgctcttatcagtaactactactattctccaaactatttcttcacttgtatgttgacatgtcatgtaatactgatctccttttagtatcctgggtataccatgcagtaaaattaggtcagtctgctcacactggtcgttcatgtcttggttttagcatgttataattgactgcatatctgtgtattgtttctgagaatctgtctctgcacaatatatttttgtacttctattcagaaaacaatttcgccgttgtttacccaggagcgtttgcttaggccgtgcttagttcgtgtgccaaatcttttttgaagtatacggacacacatttgaagtattaaacgtagactaataacaaaacaaattatagattccgcctgtaaactgcgagacgaatttattaagcctaattaatctgttattagcaaatgtttactgtagcatcacattgtcaaatcatggtgtaattaggctcaaaagattcgtctcgcaatttacatgcaaactgtgcaattggttttttaatgctccatacatgtgtccaaacatttgatgtgacagaatttttggaagtttgaagggaactaaacactgccttagcaaggttttctttcaatagagtcaagtgagagtatacaattattactttgcagagtgggtatattatcgtatttttgcaaaatttcccaaacagcttcactgcttatgttacatctggatacacacaaacatacagttacattttctttttttAaaaaaataatgatgatgataacaatcactagatgcagtatgtatcatatcctaagtacacatatattaaaggatgtggatctaaacccagctgatcacatattgttatgttttaaccatgcagttttccatgaatttattaatactggatgaatcgcatgaggaccatcctatcaggcaacaacttggacgctgtgaatacaataacctgaagaacatgcgtatcataggatataaaggttcaagagatcaggtcgaatttcttctacatgttgtggagaatgcccctgcacttgaggttttaactctagaggcagctggaatagagtaccaggaggtttcatttgtgttgaatgaagcgtggatcgacagaattactcagagtgccgatagatctgctctgattgctcaacagtatctgagggagaaacttagctcaaagacacagctttgtattaagactactagttccagatagagctagcgctctatgcaagccatgtgaaaatagccattagtgtaagattaattaaataatattattataaacttgaaaataattgagtttatttgatttttc
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| CDS seq | atgggtaacaatttaatacaccaaagaaaactacaagatcgtggccatggtaaacaaatcgatgagaatgcaagaccaggtgtaaggcttgaagaccttccatgggctgcaaaaactagtgttttgtctaccaagtggaggtgcatctggttgacgtgccccagattgtgttttgatggtcttgcgatgttcaaatgcgaaaggggtgaactgttcttacacgctcggcaattcattgctcaggttaatgctgttttgcaaaaataccagggagaagtggttgaggaatttcatatcagatttgattttcacagcataccagctcattatcttgataattgggttatcttttccttgtcatctaagatgaagaatctagctttagatctgcaaaccaatgatattgaacgatatcctgcacgctacaaattcccctttgaacttttggacagtggaagcttgtccggtctacaacatgtgcagttcagttttgtatctatcaaaccaccttccaagttcagaggtttccctaacctgagaaagcttgatctgcaacttctagatgcctcttcaaaggattttgaaactatgctgtcaaattgcaaacttcttgaatggctaagcatggacagatgccgcctgaatggtgaacttagggtaggtagtccattgccccgtctggtatacctacaagttgtgtactgccaagtaaccaagatacaattccatgctgtggagctagctaattttgtatataaaggagactttgtgcccatagccctcaagcattcgttgaagctggaaaatgcaaacatcaggttatatagtttgaatgatcggcatgctatcagtgacctgactaagttgttatcagatacaccttggaagttttctcatctcaggtacttgcggttgaaaaactttgcagattctgggatcgtggagacggatttttttgtctcttttctcagggctgctccttttattgagaagttagagatccatttttccatgaatttattaatactggatgaatcgcatgaggaccatcctatcaggcaacaacttggacgctgtgaatacaataacctgaagaacatgcgtatcataggatataaaggttcaagagatcaggtcgaatttcttctacatgttgtggagaatgcccctgcacttgaggttttaactctagaggcagctggaatagagtaccaggaggtttcatttgtgttgaatgaagcgtggatcgacagaattactcagagtgccgatagatctgctctgattgctcaacagtatctgagggagaaacttagctcaaagacacagctttgtattaagactactagttccagatag
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| Protein seq | MGNNLIHQRKLQDRGHGKQIDENARPGVRLEDLPWAAKTSVLSTKWRCIWLTCPRLCFDGLAMFKCERGELFLHARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSIPAHYLDNWVIFSLSSKMKNLALDLQTNDIERYPARYKFPFELLDSGSLSGLQHVQFSFVSIKPPSKFRGFPNLRKLDLQLLDASSKDFETMLSNCKLLEWLSMDRCRLNGELRVGSPLPRLVYLQVVYCQVTKIQFHAVELANFVYKGDFVPIALKHSLKLENANIRLYSLNDRHAISDLTKLLSDTPWKFSHLRYLRLKNFADSGIVETDFFVSFLRAAPFIEKLEIHFSMNLLILDESHEDHPIRQQLGRCEYNNLKNMRIIGYKGSRDQVEFLLHVVENAPALEVLTLEAAGIEYQEVSFVLNEAWIDRITQSADRSALIAQQYLREKLSSKTQLCIKTTSSR |
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| Function | Putative F-box/LRR-repeat protein At5g02700 [UniProtKB/Swiss-Prot:Q9LZ15] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0017880 | OsNaBo_06g0017880.01 | Chr06 | 20159752 | 20162372 | + | NAM | ||
| CDS seq | atgggtaacaatttaatacaccaaagaaaactacaagatcgtggccatggtaaacaaatcgatgagaatgcaagaccaggtgtaaggcttgaagaccttccatgggctgcaaaaactagtgttttgtctaccaagtggaggtgcatctggttgacgtgccccagattgtgttttgatggtcttgcgatgttcaaatgcgaaaggggtgaactgttcttacacgctcggcaattcattgctcaggttaatgctgttttgcaaaaataccagggagaagtggttgaggaatttcatatcagatttgattttcacagcataccagctcattatcttgataattgggttatcttttccttgtcatctaagatgaagaatctagctttagatctgcaaaccaatgatattgaacgatatcctgcacgctacaaattcccctttgaacttttggacagtggaagcttgtccggtctacaacatgtgcagttcagttttgtatctatcaaaccaccttccaagttcagaggtttccctaacctgagaaagcttgatctgcaacttctagatgcctcttcaaaggattttgaaactatgctgtcaaattgcaaacttcttgaatggctaagcatggacagatgccgcctgaatggtgaacttagggtaggtagtccattgccccgtctggtatacctacaagttgtgtactgccaagtaaccaagatacaattccatgctgtggagctagctaattttgtatataaaggagactttgtgcccatagccctcaagcattcgttgaagctggaaaatgcaaacatcaggttatatagtttgaatgatcggcatgctatcagtgacctgactaagttgttatcagatacaccttggaagttttctcatctcaggtacttgcggttgaaaaactttgcagattctgggatcgtggagacggatttttttgtctcttttctcagggctgctccttttattgagaagttagagatccatttttccatgaatttattaatactggatgaatcgcatgaggaccatcctatcaggcaacaacttggacgctgtgaatacaataacctgaagaacatgcgtatcataggatataaaggttcaagagatcaggtcgaatttcttctacatgttgtggagaatgcccctgcacttgaggttttaactctagaggcagctggaatagagtaccaggaggtttcatttgtgttgaatgaagcgtggatcgacagaattactcagagtgccgatagatctgctctgattgctcaacagtatctgagggagaaacttagctcaaagacacagctttgtattaagactactagttccagatag
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| Protein seq | MGNNLIHQRKLQDRGHGKQIDENARPGVRLEDLPWAAKTSVLSTKWRCIWLTCPRLCFDGLAMFKCERGELFLHARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSIPAHYLDNWVIFSLSSKMKNLALDLQTNDIERYPARYKFPFELLDSGSLSGLQHVQFSFVSIKPPSKFRGFPNLRKLDLQLLDASSKDFETMLSNCKLLEWLSMDRCRLNGELRVGSPLPRLVYLQVVYCQVTKIQFHAVELANFVYKGDFVPIALKHSLKLENANIRLYSLNDRHAISDLTKLLSDTPWKFSHLRYLRLKNFADSGIVETDFFVSFLRAAPFIEKLEIHFSMNLLILDESHEDHPIRQQLGRCEYNNLKNMRIIGYKGSRDQVEFLLHVVENAPALEVLTLEAAGIEYQEVSFVLNEAWIDRITQSADRSALIAQQYLREKLSSKTQLCIKTTSSR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0017880 | OsNaBo_06g0017880.02 | Chr06 | 20157863 | 20162464 | + | IsoSeq | ||
| CDS seq | atgttcaaatgcgaaaggggtgaactgttcttacacgctcggcaattcattgctcaggttaatgctgttttgcaaaaataccagggagaagtggttgaggaatttcatatcagatttgattttcacagcataccagctcattatcttgataattgggttatcttttccttgtcatctaagatgaagaatctagctttagatctgcaaaccaatgatattgaacgatatcctgcacgctacaaattcccctttgaacttttggacagtggaagcttgtccggtctacaacatgtgcagttcagttttgtatctatcaaaccaccttccaagttcagaggtttccctaacctgagaaagcttgatctgcaacttctagatgcctcttcaaaggattttgaaactatgctgtcaaattgcaaacttcttgaatggctaagcatggacagatgccgcctgaatggtgaacttagggtaggtagtccattgccccgtctggtatacctacaagttgtgtactgccaagtaaccaagatacaattccatgctgtggagctagctaattttgtatataaaggagactttgtgcccatagccctcaagcattcgttgaagctggaaaatgcaaacatcaggttatatagtttgaatgatcggcatgctatcagtgacctggtaaaatgttttccgaacttgcaaaatctgaattttcacctttcttggaacgatgcagagactaagttgttatcagatacaccttggaagttttctcatctcaggtacttgcggttgaaaaactttgcagattctgggatcgtggagacggatttttttgtctcttttctcagggctgctccttttattgagaagttagagatccatttttccatgaatttattaatactggatgaatcgcatgaggaccatcctatcaggcaacaacttggacgctgtgaatacaataacctgaagaacatgcgtatcataggatataaaggttcaagagatcaggtcgaatttcttctacatgttgtggagaatgcccctgcacttgaggttttaactctagaggcagctggaatagagtaccaggaggtttcatttgtgttgaatgaagcgtggatcgacagaattactcagagtgccgatagatctgctctgattgctcaacagtatctgagggagaaacttagctcaaagacacagctttgtattaagactactagttcc
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| Protein seq | MFKCERGELFLHARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSIPAHYLDNWVIFSLSSKMKNLALDLQTNDIERYPARYKFPFELLDSGSLSGLQHVQFSFVSIKPPSKFRGFPNLRKLDLQLLDASSKDFETMLSNCKLLEWLSMDRCRLNGELRVGSPLPRLVYLQVVYCQVTKIQFHAVELANFVYKGDFVPIALKHSLKLENANIRLYSLNDRHAISDLVKCFPNLQNLNFHLSWNDAETKLLSDTPWKFSHLRYLRLKNFADSGIVETDFFVSFLRAAPFIEKLEIHFSMNLLILDESHEDHPIRQQLGRCEYNNLKNMRIIGYKGSRDQVEFLLHVVENAPALEVLTLEAAGIEYQEVSFVLNEAWIDRITQSADRSALIAQQYLREKLSSKTQLCIKTTSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 20159944 | 20160081 | + | OsNaBo_06g0017880.02 | OsNaBo_06g0017880.02,OsNaBo_06g0017880.01 | All |
| A5 | Chr06 | 20160833 | 20160982 | + | OsNaBo_06g0017880.02 | OsNaBo_06g0017880.02,OsNaBo_06g0017880.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.472878 | 15.858396 | 6.579690 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0161300 | SBH | 1.406937 | 1.722493 | 4.482995 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06600 | SBH | 0.938528 | 1.054955 | 0.773807 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0161300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004510 | SBH | 0.623865 | 0.000000 | 2.284978 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004420 | SBH | 0.182280 | 1.001310 | 1.664626 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004360 | SBH | 1.099971 | 4.044620 | 5.882079 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004470 | SBH | 0.052187 | 0.043166 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018070 | RBH | 0.000000 | 0.000000 | 8.598825 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0304200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017570 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0279100 | RBH | 2.3414015 | 12.884489 | 12.1672225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0017940 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017930 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017610 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018290 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0017750 | RBH | 0.000000 | 1.083282 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017710 | RBH | 0.000000 | 0.000000 | 1.768515 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004420 | RBH | 0.794198 | 0.000000 | 4.838087 |
