Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os06g0161300 | OGI:06009000 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr06:3102940-3107487 | ||||||||
| Gene Symbol | OsFbox297, Os_F0442, OsSTA173 | ||||||||||
| DNA seq | CGTGCGCGGTGTGGCGGCGAGGACGTGCGGCAGTGCGGCGGCGGCGACTTCCGGCTGCGTCGGCGGAAGGCGGCGCCAAGGCGGGTAGGAGCCTAGGCAGCGCGTCGGGCGGCGGCGACTGCAGTCTAGTCTGCAGCGTGCTCGTCGGCGGCTGCGGCAGAGGCTTCCGGCTGCGGCGTGCGCGGCTGCGTCGGCGGCAGGAGGCGCCGAGGCGTGCAGGCGGCGCGTCGACGGCTGCGGCCGTGCGGCGTTGGGGCTCGGCCAGGCGTGCAGGCCGCCAGTCCACCAGGCCACCACACAGGTACGCGATGCGGCAGCCGAACGACCACGGCTTGCCGGCCTGGCATGGATTGCGTGAGGGGCTTGATTCATTGATTCATTGCATTGATTTGTTCTAGGTAGTTCAATAGTAGTTATGTTTTCCGGTGGCGACGGCTTGTTTCATTGATTTGTTCTATAGTAGTTCAATAGTTCACTAGCACCGAAGGATTCAACTTCCTCAGTTCCTGTCTTCTTTATTTTTCAGAGTGTTAACTGTTAAGTGTATATTTATTGACAGATTGATAGTATAAAGCTGTAAATATTAGGAATTTAGATAACTTAGAACCATAATATTTAATTTTCAGTGTGTTAAATTTATATATATGATGATAGTATGAGGCTATATATGAGCTGTTGTTAGGAATTTAGAGAATTTAGAGAGGGTGTTTTCTTCGATGAACTATATAAAAACAAGAAGCAAGATGAGCAACAATCTACATTTATTGGAAGAGAATTTTTTGTACAAGTTAAAGGATGAGGACATCATCACTCATTTTTAAAATATCAAGCATTGAAAAGTTCTCCTCTAAATTGTAAGTTTTTTTTATCATTTTACCATTTTCTATCCTTTACATGTTATATATGTTGCCACTTTCATATGTCGAACAATTAGTACTTATATATGTTAAAGAATTTGGACTTATGATCAATTCTATCAATTTATAAAGTTATGGCCATATGCTATAATATTATACAATTAGTAATGTGTAATATTATACCAATTAATTATTGGACTTCTAGAAGTAAAAAGAATTTTGTTTTACCCCTACCTATTTCGAATACCCAACCTCTAAATCCTGGGCCCGCCACTGGATCATAATCCAACGGCCAGGTCCAGGTGACTGAAATGTGCCTAGCGAATCCTAACATATTCGTTCTTTGGCCCCGGCGATGAGTAGCAAGTTTATTACTCTCTCCGTTTCAGGTTATAAAACATTTTGACTTTGGTCAAAGACAAACTGTTTCAAGTTTAACTAAGTTAGTTTCATCAAATCAATAATTGAATATATTTTTATAATAAATTTATCTTGGGTTGAAAATGTTACTACCTTTTTCTACAAACTTGATCGAACTTAAAACAATTTGACTTTAACCAAAGTCACCAAAGTCAAAACGTCTTATAACCTAAAACGGAGGGAGGGAGTACATGCCAAGTTGTTGTGAATTCCTTGCGGATAATAAAAGTCATCATCAGTAAATTCTATATATTTTTCATATATATCCAAACATTATTTCTTTTATCAGTTCTACACATACTTATTGTGGTATCAGTGCTTTGATGAGACGGATACCATCCTATGGTCGTGTATCAGAATAATTAGGAAAGCCTAGTGCTAAAAGCTCGAATACCTATCCTAAAATTTCTGGGACCCTGCTTGAAAACCAAGATTTTGTCTCAATTCAGACTGAAAATATTTTACACAGTGAAGAAAAATTGTGCAGAAACCAAACGTAAACTAGATGGATCATGCATTGTTTCAGCACCTTCTAATTAGCTAGTTGTCTTGAACAGTACACTCCTTGATTCTTCTGTATTTCCACTTATTGTTCCAATTCCATGGATAACAGAGGAAAGTAACCTTGTTGCATTCGGCATAGAAATGGGTAACAATTTAATACACCAAAGAAAACTACAAGATCGTGGCCATGGTAAACAAATCGATGAGAATGCAAGACCAGGTGTAAGGCTTGAAGACCTTCCATGGGTATGTTCATCTTAACTTCTTTTCTGTTTGAGTGTTGGGTAGAAATGGGATTTATTTATAATCTCCAAATGTATGTGATGCATTTGCTGCAGGACCTTGTAGTATACAAAATTTTATCTAAATTACCACTGAAAGAGGCTGCAAAAACTAGTGTTTTGTCTACCAAGTGGAGGTGCATCTGGTTGACGTGCCCCAGATTGTGTTTTGATGGTCTTGCGATGTTCAAATGCGAAAGGGGTGAACTGTTCTTACACGCTCGGCAATTCATTGCTCAGGTTAATGCTGTTTTGCAAAAATACCAGGGAGAAGTGGTTGAGGAATTTCATATCAGATTTGATTTTCACAGCATACCAGCTCATTATCTTGATAATTGGGTTATCTTTTCCTTGTCATCTAAGATGAAGAATCTAGCTTTAGATCTGCAAACCAATGATATTGAACGATATCCTGCACGCTACAAATTCCCCTTTGAACTTTTGGACAGTGGAAGCTTGTCCGGTCTACAACATGTGCAGTTCAGTTTTGTATCTATCAAACCACCTTCCAAGTTCAGAGGTTTCCCTAACCTGAGAAAGCTTGATCTGCAACTTCTAGATGCCTCTTCAAAGGATTTTGAAACTATGCTGTCAAATTGCAAACTTCTTGAATGGCTAAGCATGGACAGATGCCGCCTGAATGGTGAACTTAGGGTAGGTAGTCCATTGCCCCGTCTGGTATACCTACAAGTTGTGTACTGCCAAGTAACCAAGATACAATTCCATGCTGTGGAGCTAGCTAATTTTGTATATAAAGGAGACTTTGTGCCCATAGCCCTCAAGCATTCGTTGAAGCTGGAAAATGCAAACATCAGGTTATATAGTTTGAATGATCGGCATGCTATCAGTGACCTGGTAAAATGTTTTCCGAACTTGCAAAATCTGAATTTTCACCTTTCTTGGAACGATGCAGAGGTTTGTTCTCAGAAACTAACCCTCCATGCTACAGTTTTAGCTTGTTTAACATAATCTAGTGAATGATCTTTGTCCTTTTGTTTTCCAGACTAAGTTGTTATCAGATACACCTTGGAAGTTTTCTCATCTCAGGTACTTGCGGTTGAAAAACTTTGCAGATTCTGGGATCGTGGAGACGAATTTTTTTGTCTCTTTTCTCAGGGCTGCTCCTTTTATTGAGAAGTTAGAGATCCATGTAAGTGCTCTTATCAGTAACTACTACTATTCTCCAAACTATTTCTTCACTTGTATGTTGACATGTCATGTAATACTGATCTCCTTTTAGTATCCTGGGTATACCATGCAGTAAAATTAGGTCAGTCTGCTCACACTGGTCGTTCATGTCTTGGTTTTAGCATGTTATAATTGACTGCATATCTGTGTATTGTTTCTGAGAATCTGTCTCTGCACAATATATTTTTGTACTTCTATTCAGAAAACAATTTCGCCGTTGTTTACCCAGGAGCGTTTGCTTAGGCCGTGTTTAGTTCGTGTGCCAAATCTTTTTTGAAGTATACGGACACACATTTGAAGTATTAAACGTAGACTAATAACAAAACAAATTATAGATTCCGCCTGTAAACTGCGAGACGAATTTATTAAGCCTAATTAATCTGTTATTAGCAAATGTTTACTGTAGCATCACATTGTCAAATCATGGTGTAATTAGGCTCAAAAGATTCGTCTCGCAATTTACATGCAAACTGTGCAATTGGTTTTTTAATGCTCCATACATGTGTCCAAACATTTGATGTGACAGAATTTTTGGAAGTTTGAAGGGAACTAAACACTGCCTTAGCAAGGTTTTCTTTCAATAGAGTCAAGTGAGAGTATACAATTATTACTTTGCAGAGTGGGTATATTATCGTATTTTTGCAAAATTTCCCAAACAGCTTCACTGCTTATGTTACATCTGGATACACACAAACATACAGTTACATTTTCTTTTTTTTAAAAAATAATGATGATGATAACAATCACTAGATGCAGTATGTATCATATCCTAGGTACACATATATTAAAGGATGTGGATCTAAACCCAGCTGATCACATATTGTTATGTTTTAACCATGCAGTTTTCCATGAATTTATTAATACTGGATGAATCGCATGAGGACCATCCTATCAGGCAACAACTTGGACGCTGTGAATACAATAACCTGAAGAACATGCGTATCATAGGATATAAAGGTTCAAGAGATCAGGTCGAATTTCTTCTACATGTTGTGGAGAATGCCCCTGCACTTGAGGTTTTAACTCTAGAGGCAGCTGGAATAGAGTACCAGGAGGTTTCATTTGTGTTGAATGAAGCGTGGATCGACAGAATTACTCAGAGTGCCGATAGATCTGCTCTGATTGCTCAACAGTATCTGAGGGAGAAACTTAGCTCAAAGACACAGCTTTGTATTAAGACTACTAGTTCCAGATAGAGCTAGCGCTCTATGCAAGCCATGTGAAAATAGCCATTAGTGTAAGATTAATTAAATAATATTATTATAAACTTGAAAATAATTGAGTTTATTTGATTTTTC
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| CDS seq | CTAGTTGTCTTGAACAGTACACTCCTTGATTCTTCTGTATTTCCACTTATTGTTCCAATTCCATGGATAACAGAGGAAAGTAACCTTGTTGCATTCGGCATAGAAATGGGTAACAATTTAATACACCAAAGAAAACTACAAGATCGTGGCCATGGTAAACAAATCGATGAGAATGCAAGACCAGGTGTAAGGCTTGAAGACCTTCCATGGGACCTTGTAGTATACAAAATTTTATCTAAATTACCACTGAAAGAGGCTGCAAAAACTAGTGTTTTGTCTACCAAGTGGAGGTGCATCTGGTTGACGTGCCCCAGATTGTGTTTTGATGGTCTTGCGATGTTCAAATGCGAAAGGGGTGAACTGTTCTTACACGCTCGGCAATTCATTGCTCAGGTTAATGCTGTTTTGCAAAAATACCAGGGAGAAGTGGTTGAGGAATTTCATATCAGATTTGATTTTCACAGCATACCAGCTCATTATCTTGATAATTGGGTTATCTTTTCCTTGTCATCTAAGATGAAGAATCTAGCTTTAGATCTGCAAACCAATGATATTGAACGATATCCTGCACGCTACAAATTCCCCTTTGAACTTTTGGACAGTGGAAGCTTGTCCGGTCTACAACATGTGCAGTTCAGTTTTGTATCTATCAAACCACCTTCCAAGTTCAGAGGTTTCCCTAACCTGAGAAAGCTTGATCTGCAACTTCTAGATGCCTCTTCAAAGGATTTTGAAACTATGCTGTCAAATTGCAAACTTCTTGAATGGCTAAGCATGGACAGATGCCGCCTGAATGGTGAACTTAGGGTAGGTAGTCCATTGCCCCGTCTGGTATACCTACAAGTTGTGTACTGCCAAGTAACCAAGATACAATTCCATGCTGTGGAGCTAGCTAATTTTGTATATAAAGGAGACTTTGTGCCCATAGCCCTCAAGCATTCGTTGAAGCTGGAAAATGCAAACATCAGGTTATATAGTTTGAATGATCGGCATGCTATCAGTGACCTGGTAAAATGTTTTCCGAACTTGCAAAATCTGAATTTTCACCTTTCTTGGAACGATGCAGAGACTAAGTTGTTATCAGATACACCTTGGAAGTTTTCTCATCTCAGGTACTTGCGGTTGAAAAACTTTGCAGATTCTGGGATCGTGGAGACGAATTTTTTTGTCTCTTTTCTCAGGGCTGCTCCTTTTATTGAGAAGTTAGAGATCCATTTTTCCATGAATTTATTAATACTGGATGAATCGCATGAGGACCATCCTATCAGGCAACAACTTGGACGCTGTGAATACAATAACCTGAAGAACATGCGTATCATAGGATATAAAGGTTCAAGAGATCAGGTCGAATTTCTTCTACATGTTGTGGAGAATGCCCCTGCACTTGAGGTTTTAACTCTAGAGGCAGCTGGAATAGAGTACCAGGAGGTTTCATTTGTGTTGAATGAAGCGTGGATCGACAGAATTACTCAGAGTGCCGATAGATCTGCTCTGATTGCTCAACAGTATCTGAGGGAGAAACTTAGCTCAAAGACACAGCTTTGTATTAAGACTACTAGTTCCAGATAG
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| Protein seq | LVVLNSTLLDSSVFPLIVPIPWITEESNLVAFGIEMGNNLIHQRKLQDRGHGKQIDENARPGVRLEDLPWDLVVYKILSKLPLKEAAKTSVLSTKWRCIWLTCPRLCFDGLAMFKCERGELFLHARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSIPAHYLDNWVIFSLSSKMKNLALDLQTNDIERYPARYKFPFELLDSGSLSGLQHVQFSFVSIKPPSKFRGFPNLRKLDLQLLDASSKDFETMLSNCKLLEWLSMDRCRLNGELRVGSPLPRLVYLQVVYCQVTKIQFHAVELANFVYKGDFVPIALKHSLKLENANIRLYSLNDRHAISDLVKCFPNLQNLNFHLSWNDAETKLLSDTPWKFSHLRYLRLKNFADSGIVETNFFVSFLRAAPFIEKLEIHFSMNLLILDESHEDHPIRQQLGRCEYNNLKNMRIIGYKGSRDQVEFLLHVVENAPALEVLTLEAAGIEYQEVSFVLNEAWIDRITQSADRSALIAQQYLREKLSSKTQLCIKTTSSR |
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| Function | Putative F-box/LRR-repeat protein At3g28410 [UniProtKB/Swiss-Prot:Q9LSJ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os06g0161300 | Os06t0161300-01 | Chr06 | 3102940 | 3107487 | + | irgsp1_rep | ||
| CDS seq | CTAGTTGTCTTGAACAGTACACTCCTTGATTCTTCTGTATTTCCACTTATTGTTCCAATTCCATGGATAACAGAGGAAAGTAACCTTGTTGCATTCGGCATAGAAATGGGTAACAATTTAATACACCAAAGAAAACTACAAGATCGTGGCCATGGTAAACAAATCGATGAGAATGCAAGACCAGGTGTAAGGCTTGAAGACCTTCCATGGGACCTTGTAGTATACAAAATTTTATCTAAATTACCACTGAAAGAGGCTGCAAAAACTAGTGTTTTGTCTACCAAGTGGAGGTGCATCTGGTTGACGTGCCCCAGATTGTGTTTTGATGGTCTTGCGATGTTCAAATGCGAAAGGGGTGAACTGTTCTTACACGCTCGGCAATTCATTGCTCAGGTTAATGCTGTTTTGCAAAAATACCAGGGAGAAGTGGTTGAGGAATTTCATATCAGATTTGATTTTCACAGCATACCAGCTCATTATCTTGATAATTGGGTTATCTTTTCCTTGTCATCTAAGATGAAGAATCTAGCTTTAGATCTGCAAACCAATGATATTGAACGATATCCTGCACGCTACAAATTCCCCTTTGAACTTTTGGACAGTGGAAGCTTGTCCGGTCTACAACATGTGCAGTTCAGTTTTGTATCTATCAAACCACCTTCCAAGTTCAGAGGTTTCCCTAACCTGAGAAAGCTTGATCTGCAACTTCTAGATGCCTCTTCAAAGGATTTTGAAACTATGCTGTCAAATTGCAAACTTCTTGAATGGCTAAGCATGGACAGATGCCGCCTGAATGGTGAACTTAGGGTAGGTAGTCCATTGCCCCGTCTGGTATACCTACAAGTTGTGTACTGCCAAGTAACCAAGATACAATTCCATGCTGTGGAGCTAGCTAATTTTGTATATAAAGGAGACTTTGTGCCCATAGCCCTCAAGCATTCGTTGAAGCTGGAAAATGCAAACATCAGGTTATATAGTTTGAATGATCGGCATGCTATCAGTGACCTGGTAAAATGTTTTCCGAACTTGCAAAATCTGAATTTTCACCTTTCTTGGAACGATGCAGAGACTAAGTTGTTATCAGATACACCTTGGAAGTTTTCTCATCTCAGGTACTTGCGGTTGAAAAACTTTGCAGATTCTGGGATCGTGGAGACGAATTTTTTTGTCTCTTTTCTCAGGGCTGCTCCTTTTATTGAGAAGTTAGAGATCCATTTTTCCATGAATTTATTAATACTGGATGAATCGCATGAGGACCATCCTATCAGGCAACAACTTGGACGCTGTGAATACAATAACCTGAAGAACATGCGTATCATAGGATATAAAGGTTCAAGAGATCAGGTCGAATTTCTTCTACATGTTGTGGAGAATGCCCCTGCACTTGAGGTTTTAACTCTAGAGGCAGCTGGAATAGAGTACCAGGAGGTTTCATTTGTGTTGAATGAAGCGTGGATCGACAGAATTACTCAGAGTGCCGATAGATCTGCTCTGATTGCTCAACAGTATCTGAGGGAGAAACTTAGCTCAAAGACACAGCTTTGTATTAAGACTACTAGTTCCAGATAG
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| Protein seq | LVVLNSTLLDSSVFPLIVPIPWITEESNLVAFGIEMGNNLIHQRKLQDRGHGKQIDENARPGVRLEDLPWDLVVYKILSKLPLKEAAKTSVLSTKWRCIWLTCPRLCFDGLAMFKCERGELFLHARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSIPAHYLDNWVIFSLSSKMKNLALDLQTNDIERYPARYKFPFELLDSGSLSGLQHVQFSFVSIKPPSKFRGFPNLRKLDLQLLDASSKDFETMLSNCKLLEWLSMDRCRLNGELRVGSPLPRLVYLQVVYCQVTKIQFHAVELANFVYKGDFVPIALKHSLKLENANIRLYSLNDRHAISDLVKCFPNLQNLNFHLSWNDAETKLLSDTPWKFSHLRYLRLKNFADSGIVETNFFVSFLRAAPFIEKLEIHFSMNLLILDESHEDHPIRQQLGRCEYNNLKNMRIIGYKGSRDQVEFLLHVVENAPALEVLTLEAAGIEYQEVSFVLNEAWIDRITQSADRSALIAQQYLREKLSSKTQLCIKTTSSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0161300 | RBH | 1.406937 | 1.722493 | 4.482995 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06600 | RBH | 0.938528 | 1.054955 | 0.773807 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004510 | RBH | 0.623865 | 0.000000 | 2.284978 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004420 | RBH | 0.182280 | 1.001310 | 1.664626 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004360 | RBH | 1.099971 | 4.044620 | 5.882079 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004470 | RBH | 0.052187 | 0.043166 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004380 | RBH | 0.000000 | 0.000000 | 3.318690 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0052900 | RBH | 1.8588365 | 4.0357075 | 8.69533 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004270 | RBH | 0.000000 | 0.000000 | 0.440605 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0053100 | RBH | 0 | 0 | 0.00337 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004500 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004360 | RBH | 0.125042 | 2.563911 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004410 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004390 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004260 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004190 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004420 | RBH | 0.794198 | 0.000000 | 4.838087 |
