Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0017750 | OGI:06008910 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:20992819-20995497 | ||||||||
| Gene Symbol | OsFbox297, Os_F0442, OsFbox328, Os_F0254 | ||||||||||
| DNA seq | aactagatggatcatgcattgtttcagcaccttctaattagctagttgtcttgaacagtacactccttgattcttctgtatttccacttattgttccaattccatggataacagaggaaagtaaccttgttgcattcggcatagaaatgggtaacaatttaatacaccaaagaaaactacaagatcgtggccatggtaaacaaatcgatgagaatgcaagaccaggtgtaaggcttgaagaccttccatgggtatgttcatcttaacttcttttctgtttgagtgttgggtagaaatgggatttatttataatctccaaatgtatgtgatgcatttgctgcaggaccttgtagtatacaaaattttatctaaattaccactgaaagaggctgcaaaaactagtgttttgtctaccaagtggaggtgcatctggttgacgtgccccagattgtgttttgatggtcttgcgatgttcaaatgcgaaaggggtgaactgttcttacacgctcggcaattcattgctcaggttaatgctgttttgcaaaaataccagggagaagtggttgaggaatttcatatcagatttgattttcacagcataccagctcattatcttgataattgggttatcttttccttgtcatctaagatgaagaatctagctttagatctgcaaaccaatgatattgaacgatatcctgcacgctacaaattcccctttgaacttttggacagtggaagcttgtccggtctacaacatgtgcagttcagttttgtatctatcaaaccaccttccaagttcagaggtttccctaacctgagaaagcttgatctgcaacttctagatgcctcttcaaaggattttgaaactatgctgtcaaattgcaaacttcttgaatggctaagcatggacagatgccgcctgaatggtgaacttagggtaggtagtccattgccccgtctggtatacctacaagttgtgtactgccaagtaaccaagatacaattccatgctgtggagctagctaattttgtatataaaggagactttgtgcccatagccctcaagcattcgttgaagctggaaaatgcaaacatcaggttatatagtttgaatgatcggcatgctatcagtgacctggtaaaatgttttccgaacttgcaaaatctgaattttcacctttcttggaacgatgcagaggtttgttctcagaaactaaccctccatgctacagttttagcttgtttaacataatctagtgaatgatctttgtccttttgttttccagactaagttgttatcagatacaccttggaagttttctcatctcaggtacttgcggttgaaaaactttgcagattctgggatcgtggagatgaatttttttgtctcttttctcagggctgctccttttattgagaagttagagatccatgtaagtgctcttatcagtaactactactattctccaaactatttcttcacttgtatgttgacatgtcatgtaatactgatctccttttagtatcctgggtataccatgcagtaaaattaggtcagtctgctcacactggtcgttcatgtcttggttttagcatgttataattgactgcatatctgtgtattgtttctgagaatctgtctctgcacaatatattttgtacttctattcagaaaacaatttcgccgttgtttacccaggagcgtttgcttaggccgtgtttagttcgtgtgccaaatcttttttgaagtatacggacacacatttgaagtattaaacgtagactaataacaaaacaaattatagattccgcctgtaaactgcgagacgaatttattaagcctaattaatatgttattagcaaatgtttactgtagcatcacattgtcaaatcatggtgtaattaggctcaaaagattcgtctcgcaatttacatgcaaactgtgcaattggttttttaatgctccatacatgtatccaaacatttgatgtgacagaatttttggaagtttgaagggaactaaacactgccttagcaaggttttctttcaatagagtcaagtgagagtatacaattattactttgcagagtgggtatattatcgtatttttgcaaaatttcccaaacagcttcactgcttatgttacatctggatacacacaaacatacagttacattttcTttttttaaaaaaataatgatgatgataacaatcactagatgcagtatgtatcatatcctaggtacacatatattaaaggatgtggatctaaacccagctgatcacatattgttatgttttaaccatgcagttttccatgaatttattaatactggatgaatcgcatgaggaccatcctatcaggcaacaacttggacgctgtgaatacaataacctgaagaacatgcgtatcataggatataaaggttcaagagatcaggtcgaatttcttctacatgttgtggagaatgcccctgcacttgaggttttaactctagaggcagctggaatagagtaccaggaggtttcatttgtgttgaatgaagcgtggatcgacagaattactcagagtgccgatagatctgctctgattgctcaacagtatctgagggagaaacttagctcaaagacacagctttgtattaagactactagttccagatagagctagcgct
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| CDS seq | atgggtaacaatttaatacaccaaagaaaactacaagatcgtggccatggtaaacaaatcgatgagaatgcaagaccaggtgtaaggcttgaagaccttccatgggaccttgtagtatacaaaattttatctaaattaccactgaaagaggctgcaaaaactagtgttttgtctaccaagtggaggtgcatctggttgacgtgccccagattgtgttttgatggtcttgcgatgttcaaatgcgaaaggggtgaactgttcttacacgctcggcaattcattgctcaggttaatgctgttttgcaaaaataccagggagaagtggttgaggaatttcatatcagatttgattttcacagcataccagctcattatcttgataattgggttatcttttccttgtcatctaagatgaagaatctagctttagatctgcaaaccaatgatattgaacgatatcctgcacgctacaaattcccctttgaacttttggacagtggaagcttgtccggtctacaacatgtgcagttcagttttgtatctatcaaaccaccttccaagttcagaggtttccctaacctgagaaagcttgatctgcaacttctagatgcctcttcaaaggattttgaaactatgctgtcaaattgcaaacttcttgaatggctaagcatggacagatgccgcctgaatggtgaacttagggtaggtagtccattgccccgtctggtatacctacaagttgtgtactgccaagtaaccaagatacaattccatgctgtggagctagctaattttgtatataaaggagactttgtgcccatagccctcaagcattcgttgaagctggaaaatgcaaacatcaggttatatagtttgaatgatcggcatgctatcagtgacctggtaaaatgttttccgaacttgcaaaatctgaattttcacctttcttggaacgatgcagagactaagttgttatcagatacaccttggaagttttctcatctcaggtacttgcggttgaaaaactttgcagattctgggatcgtggagatgaatttttttgtctcttttctcagggctgctccttttattgagaagttagagatccatttttccatgaatttattaatactggatgaatcgcatgaggaccatcctatcaggcaacaacttggacgctgtgaatacaataacctgaagaacatgcgtatcataggatataaaggttcaagagatcaggtcgaatttcttctacatgttgtggagaatgcccctgcacttgaggttttaactctagaggcagctggaatagagtaccaggaggtttcatttgtgttgaatgaagcgtggatcgacagaattactcagagtgccgatagatctgctctgattgctcaacagtatctgagggagaaacttagctcaaagacacagctttgtattaagactactagttccagatag
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| Protein seq | MGNNLIHQRKLQDRGHGKQIDENARPGVRLEDLPWDLVVYKILSKLPLKEAAKTSVLSTKWRCIWLTCPRLCFDGLAMFKCERGELFLHARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSIPAHYLDNWVIFSLSSKMKNLALDLQTNDIERYPARYKFPFELLDSGSLSGLQHVQFSFVSIKPPSKFRGFPNLRKLDLQLLDASSKDFETMLSNCKLLEWLSMDRCRLNGELRVGSPLPRLVYLQVVYCQVTKIQFHAVELANFVYKGDFVPIALKHSLKLENANIRLYSLNDRHAISDLVKCFPNLQNLNFHLSWNDAETKLLSDTPWKFSHLRYLRLKNFADSGIVEMNFFVSFLRAAPFIEKLEIHFSMNLLILDESHEDHPIRQQLGRCEYNNLKNMRIIGYKGSRDQVEFLLHVVENAPALEVLTLEAAGIEYQEVSFVLNEAWIDRITQSADRSALIAQQYLREKLSSKTQLCIKTTSSR |
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| Function | Putative F-box/LRR-repeat protein At3g28410 [UniProtKB/Swiss-Prot:Q9LSJ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0017750 | OsLaMu_06g0017750.01 | Chr06 | 20992819 | 20995497 | + | NAM | ||
| CDS seq | atgggtaacaatttaatacaccaaagaaaactacaagatcgtggccatggtaaacaaatcgatgagaatgcaagaccaggtgtaaggcttgaagaccttccatgggaccttgtagtatacaaaattttatctaaattaccactgaaagaggctgcaaaaactagtgttttgtctaccaagtggaggtgcatctggttgacgtgccccagattgtgttttgatggtcttgcgatgttcaaatgcgaaaggggtgaactgttcttacacgctcggcaattcattgctcaggttaatgctgttttgcaaaaataccagggagaagtggttgaggaatttcatatcagatttgattttcacagcataccagctcattatcttgataattgggttatcttttccttgtcatctaagatgaagaatctagctttagatctgcaaaccaatgatattgaacgatatcctgcacgctacaaattcccctttgaacttttggacagtggaagcttgtccggtctacaacatgtgcagttcagttttgtatctatcaaaccaccttccaagttcagaggtttccctaacctgagaaagcttgatctgcaacttctagatgcctcttcaaaggattttgaaactatgctgtcaaattgcaaacttcttgaatggctaagcatggacagatgccgcctgaatggtgaacttagggtaggtagtccattgccccgtctggtatacctacaagttgtgtactgccaagtaaccaagatacaattccatgctgtggagctagctaattttgtatataaaggagactttgtgcccatagccctcaagcattcgttgaagctggaaaatgcaaacatcaggttatatagtttgaatgatcggcatgctatcagtgacctggtaaaatgttttccgaacttgcaaaatctgaattttcacctttcttggaacgatgcagagactaagttgttatcagatacaccttggaagttttctcatctcaggtacttgcggttgaaaaactttgcagattctgggatcgtggagatgaatttttttgtctcttttctcagggctgctccttttattgagaagttagagatccatttttccatgaatttattaatactggatgaatcgcatgaggaccatcctatcaggcaacaacttggacgctgtgaatacaataacctgaagaacatgcgtatcataggatataaaggttcaagagatcaggtcgaatttcttctacatgttgtggagaatgcccctgcacttgaggttttaactctagaggcagctggaatagagtaccaggaggtttcatttgtgttgaatgaagcgtggatcgacagaattactcagagtgccgatagatctgctctgattgctcaacagtatctgagggagaaacttagctcaaagacacagctttgtattaagactactagttccagatag
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| Protein seq | MGNNLIHQRKLQDRGHGKQIDENARPGVRLEDLPWDLVVYKILSKLPLKEAAKTSVLSTKWRCIWLTCPRLCFDGLAMFKCERGELFLHARQFIAQVNAVLQKYQGEVVEEFHIRFDFHSIPAHYLDNWVIFSLSSKMKNLALDLQTNDIERYPARYKFPFELLDSGSLSGLQHVQFSFVSIKPPSKFRGFPNLRKLDLQLLDASSKDFETMLSNCKLLEWLSMDRCRLNGELRVGSPLPRLVYLQVVYCQVTKIQFHAVELANFVYKGDFVPIALKHSLKLENANIRLYSLNDRHAISDLVKCFPNLQNLNFHLSWNDAETKLLSDTPWKFSHLRYLRLKNFADSGIVEMNFFVSFLRAAPFIEKLEIHFSMNLLILDESHEDHPIRQQLGRCEYNNLKNMRIIGYKGSRDQVEFLLHVVENAPALEVLTLEAAGIEYQEVSFVLNEAWIDRITQSADRSALIAQQYLREKLSSKTQLCIKTTSSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.083282 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0713400 | SBH | 0.185495 | 0.734148 | 2.910670 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06600 | SBH | 0.938528 | 1.054955 | 0.773807 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0713400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004510 | SBH | 0.623865 | 0.000000 | 2.284978 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004420 | SBH | 0.182280 | 1.001310 | 1.664626 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004360 | SBH | 1.099971 | 4.044620 | 5.882079 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004470 | SBH | 0.052187 | 0.043166 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018070 | RBH | 0.000000 | 0.000000 | 8.598825 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0304600 | RBH | 1.558142 | 3.4586405 | 4.75055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017570 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0279100 | SBH | 2.3414015 | 12.884489 | 12.1672225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0017910 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017930 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017610 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018290 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004260 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G017710 | RBH | 0.000000 | 0.000000 | 1.768515 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017880 | RBH | 1.472878 | 15.858396 | 6.579690 |
