Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0007260 | OGI:04045400 | 6/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:13628902-13632956 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcatacgagggatgtggttgtgtggaatgctatgatatctggctacgctcagcatggagatgggaaggaagctatcaatttatttgaaaggatgaaggatgaaggagttgagcccaactggattacttttctggcagtattgactgtttgtatccacactggcttgtgtgattttggaatacagtgtttcgagggaatgcaggaattgtacagaattgtgcctcgggttgatcattactcatgcatggtggatctttgtctcggcagagctgctaatcttgaaagagctgtggacttgatccgctcaatgccctttgaaccgcatccttctgcatatggaaccttattggctgcttgtagagtttataagaacttggagtttgctgagcttgcggctggaaaactgattgaaaaggatccacagagcgcatgcgcctatatacaacttgcaaatatctatgcagtcgcaaatcagtgggatgatgtctctagagtaaggaggtggatgaaggataatgcagctgtgaaaacacctgggtataggtggatagagatcaatggtgtgatgcatgagtttagatcatcttgattttgtctttcatgacgtggatgaaactctgaaggtgcagatgctaatgaggcatagtgagaagcttgctattgcttttgatctgattagtactgctcctgggatgaccttgaggattttcaagaatcacagggtttgtggagattgtcataatgtagccaagatcatctccaagatagaggatcgagaaatcattttgagggatactacatgattccaccattttagaggagggcattgctcatgtggtgattactggtgaagaatgtcgataacgacagatacatactgccattttaatttttatggggattcagcactatttagtcttgtaacaaggaaaaatattgatcactgtatacaagaagcactcaacagtcaacatgtgagcaatttaccatgacgatttattcatgatgttacttttgacagatttttatgctttccagactaggagacttgtaacatacacattccctcgactacatatcagtgcatgaatacatatatcaagattgtatggaaggatttttactaatcacatgtagtaggtaccagcgatttggggaatctgcaattttggattcctagagttgtgattttctagaatagtaaatgacttttggtcaacctagagttttagtcctgagttcctggtcacatatcacatttaattcagctgcgatcagtaaactgaagttcttgactttgctggcctgtgttaaattcctgcctttcgtagtagagttttgtttacctgtcctatgtgTttttttttTGCTTTAACAAATTGGATAAAACAGGACAGACGAATGTCCAATGATGAACTGCAAGATACATAGAGTGTCAATTCTGAGTCCTTTTCTGCTTCATATGGTGAGAGCATCTTTTCAAGATGGTCATGGAAAGGGAAGATCAGTGAGGTAAGTTTGAATGCCTTATGTAAAATGGTAACAACACTTTCATGTTTTCTAAACTCTTGAAGAATAAAAAAAAAAGAGgAaaaaaatcctgcaaatagtaagccatgcagcacaactaatggtagctgcaggagattagaaatgatgcacatcatgcattcatgctggaactgattaagtttagccttattatccctgtcaaatatgtgattatatatctgtaaatatctgactaactcagattggtgaaggccagcaatcagcatcatctgcaaaggtcataaggtagagattctctacattttccatgtaaaaaaaaaaagcatttcccgcaatgtagatatcatcagcatcaactccacaatattaaggagcttggggaatactgtaaggttagtatctctctctctctctcttttctttatagtagtattttgctgcgtggtagtgaactagtataattcagtcatctagtcactttctgtcttcttttgtgcctatttgtcttgaaacatggcataaataatttactctgacttgtacaaattttacagaaagagagggaggttgctctgaacaaaatcctgcaattagaatagcagtctgcatatattttcatttgtgttgatttgaactcattacagattcaatctcattatactctgattatagctgagacctgagcttgtgtggatattttgtagggcttgtcagaattgtcaggccctcgtagcaacatcggaatcaaaagaatgggcgagctggatgacaagcacttccttgcagcttgcaagaaaaggtatgctgctgctgatggtgaagctgaaataaaagctgcggaattttgcttcgagtggcaagagcatctaaaggatgccaatttggcatccattcaagattgttaccagaggaggaacgactgaggtatgctcaacagaacgagtattctagtgcagtttctcgcatttgatctcccgacaaatatatgatctacacttccattgctgacattttcttttttagacaatggaaagaattctgacctttacttcaaagaagctacatccacttattacatagttcactcaataaagaacacgtagaaatcaggaaatgatgaagcaacaactaataacaccagcacaagataaagacaagcgtttattcaaatctattgtaaatctccactcagagttggcaaatcggctgacatgacgacgatattcgttttgctgtagcaaatcatcaatgaagatgatgagaagctagtgggcttgaaggagcagctcggctacgaggtcgacaaggccgtgaccacggcgctgctggagatcaacgagtacaatgccattatggtcatgaactacattctgctagaatatcaactaatctgtttgactttattggatacaattccattctccttaaaatgttttacttgatgatgatttctttttctcacccttgaaaaatttcaaaaagcatgttcttctcaagttatagttagtagtagcagcatttcagaacttttcgggaggaaaaataaagggactacctatacatttgatgacaaatggtgaattttctcccaaaaattcgacatatgtaaatatattataatcgcagtcactacaacagaaacaggatgtagagacggttttcttctcttgtagagacggttttgcccgtctctatatgtactagagacggcctgcgaaccgtctctaaagcgttgccattgctcccgtctcaataaacaagagacggttttgcttgccgtgtctactaggtagagacggttcatagagtcggaaaaaccgtctctatgtatattttccatattttgtagaaatatcaacaaatatatagcaaaacccaaaaataataaaaaaaatcatattttgcatcagttgcttcaacttgttttctaaatcaaaatttaaaaacattttgttacgattgtgattttgaaggataaaactcttttttttgagagagaaatagagcgcaatgtggctttctgggccaagcgcttccagaattcctcctccctaggcccacacaacacgccgggccgccgtttggccactcgccgccggtgaccggagccgagaatgagctccctttctgccgcagcctccgttacctcgagcctcttgcgctaccgctgcgcaccatgtcatcagccttcaagcacgcttgatcttgtgccgccgcccattcctggctagcgcccGgtcccgcacccgctcactcaccgtcgcggccatcacggcggctgtgcggcgcggtgacctcgctggcgcggatgaggcgttcgcatccacgccacggaagaccacggccacctacaactgcctccttgccgtctacgccagggcgtccggccgcctcgcggacgtgcgccacctgttcaacagaatatcgaccctggatgtcgtctcatacaacacgctcctctcgtgccacatcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgcgggtcagggacgtcgcgtcctag
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| CDS seq | atgcatacgagggatgtggttgtgtggaatgctatgatatctggctacgctcagcatggagatgggaaggaagctatcaatttatttgaaaggatgaaggatgaaggagttgagcccaactggattacttttctggcagtattgactgtttgtatccacactggcttgtgtgattttggaatacagtgtttcgagggaatgcaggaattgtacagaattgtgcctcgggttgatcattactcatgcatggtggatctttgtctcggcagagctgctaatcttgaaagagctgtggacttgatccgctcaatgccctttgaaccgcatccttctgcatatggaaccttattggctgcttgtagagtttataagaacttggagtttgctgagcttgcggctggaaaactgattgaaaaggatccacagagcgcatgcgcctatatacaacttgcaaatatctatgcagtcgcaaatcagtgggatgatgtctctagagtgcagatgctaatgaggcatagtgagaagcttgctattgcttttgatctgattagtactgctcctgggatgaccttgaggattttcaagaatcacaggggcttgtcagaattgtcaggccctcgtagcaacatcggaatcaaaagaatgggcgagctggatgacaagcacttccttgcagcttgcaagaaaagccttcaagcacgcttgatcttgtgccgccgcccattcctggctagcgcccGgtcccgcacccgctcactcaccgtcgcggccatcacggcggctgtgcggcgcggtgacctcgctggcgcggatgaggcgttcgcatccacgccacggaagaccacggccacctacaactgcctccttgccgtctacgccagggcgtccggccgcctcgcggacgtgcgccacctgttcaacagaatatcgaccctggatgtcgtctcatacaacacgctcctctcgtgccacatcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgcgggtcagggacgtcgcgtcctag
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| Protein seq | MHTRDVVVWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFLAVLTVCIHTGLCDFGIQCFEGMQELYRIVPRVDHYSCMVDLCLGRAANLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSACAYIQLANIYAVANQWDDVSRVQMLMRHSEKLAIAFDLISTAPGMTLRIFKNHRGLSELSGPRSNIGIKRMGELDDKHFLAACKKSLQARLILCRRPFLASARSRTRSLTVAAITAAVRRGDLAGADEAFASTPRKTTATYNCLLAVYARASGRLADVRHLFNRISTLDVVSYNTLLSCHIASGDADGARRLFASMRVRDVAS |
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| Function | Pentatricopeptide repeat-containing protein At4g16835, mitochondrial [UniProtKB/Swiss-Prot:Q9M4P3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0007260 | OsNaBo_04g0007260.01 | Chr04 | 13628902 | 13632956 | + | NAM | ||
| CDS seq | atgcatacgagggatgtggttgtgtggaatgctatgatatctggctacgctcagcatggagatgggaaggaagctatcaatttatttgaaaggatgaaggatgaaggagttgagcccaactggattacttttctggcagtattgactgtttgtatccacactggcttgtgtgattttggaatacagtgtttcgagggaatgcaggaattgtacagaattgtgcctcgggttgatcattactcatgcatggtggatctttgtctcggcagagctgctaatcttgaaagagctgtggacttgatccgctcaatgccctttgaaccgcatccttctgcatatggaaccttattggctgcttgtagagtttataagaacttggagtttgctgagcttgcggctggaaaactgattgaaaaggatccacagagcgcatgcgcctatatacaacttgcaaatatctatgcagtcgcaaatcagtgggatgatgtctctagagtgcagatgctaatgaggcatagtgagaagcttgctattgcttttgatctgattagtactgctcctgggatgaccttgaggattttcaagaatcacaggggcttgtcagaattgtcaggccctcgtagcaacatcggaatcaaaagaatgggcgagctggatgacaagcacttccttgcagcttgcaagaaaagccttcaagcacgcttgatcttgtgccgccgcccattcctggctagcgcccGgtcccgcacccgctcactcaccgtcgcggccatcacggcggctgtgcggcgcggtgacctcgctggcgcggatgaggcgttcgcatccacgccacggaagaccacggccacctacaactgcctccttgccgtctacgccagggcgtccggccgcctcgcggacgtgcgccacctgttcaacagaatatcgaccctggatgtcgtctcatacaacacgctcctctcgtgccacatcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgcgggtcagggacgtcgcgtcctag
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| Protein seq | MHTRDVVVWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFLAVLTVCIHTGLCDFGIQCFEGMQELYRIVPRVDHYSCMVDLCLGRAANLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSACAYIQLANIYAVANQWDDVSRVQMLMRHSEKLAIAFDLISTAPGMTLRIFKNHRGLSELSGPRSNIGIKRMGELDDKHFLAACKKSLQARLILCRRPFLASARSRTRSLTVAAITAAVRRGDLAGADEAFASTPRKTTATYNCLLAVYARASGRLADVRHLFNRISTLDVVSYNTLLSCHIASGDADGARRLFASMRVRDVAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.526987 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0584700 | SBH | 0.258627 | 0.265228 | 0.632115 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0584700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007010 | SBH | 0.0 | 1.189371 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0006430 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007460 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0219000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007210 | RBH | 0.0 | 0.0 | 0.576127 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000490 | SBH | 0.049047 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000500 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000510 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000480 | SBH | 0.115637 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007190 | SBH | 0.270784 | 1.299248 | 1.021425 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007290 | RBH | 2.141883 | 5.280791 | 1.556733 |
