Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_04g0007210 | OGI:04045400 | 6/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr04:13255478-13256347 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGCTCCCTTTCTGCCGCAGCCTCCGTTACCTCGAGCCTCCTGCGCTACCGCTGCGCACCATGTCATCAGCCTTCAAGCACGCTTGATCTTGTGCCGCCGCCCATTCCTGGCTAGCGCCCGGTCCCGCACCCGCTCACTCACCGTCGCGGCCATCACGGCGGCTGTGCGGCGCGGTGACCTCGCTGGCGCGGATGAGGCGTTCGCATCCACGCCACGGAAGACCACGGCCACCTACAACTGCCTCCTTGCCGTCTACGCCAGGGCGTCCGGCCGCCTCGCGGACGTGCGCCACCTGTTCAACAGAATATCGACCCTGGATGTCGTCTCATACAACACGCTCCTCTCGTGCCACATCGCCAGCGGCGACGCCGATGGCGCCCGGAGGCTCTTCGCATCGATGCGGGTCAGGGACGTCGCGTCCTAGAAAACCATGGTGTCGGAGCTGTTAAAGAGCGGGGCCGTGGAGGAGGCCAAGGTTGTGTTCCTAGCGATGCCGGTGAGGAACTCCGTTTCCTGGAACGCCATGGTTTCCAGATTTGCCTGCTCGGAGACATGAGCGTGGTGGAGGAGTACGGTTCAGGAATGCGCCGGAGAAGGGGGACACTGTTCTGTGGACTGCGATGGTGTCGGGGTACATGGATATCGACAATGCGGTGAAGGGCATCGAATACTTTGAGGCAATGCCAGTGAGGAACTTGGTTTCATGGAATGGTGTAGTTGCTGGGTATGTGAAGAATTCACATGCGGATGATGCTTTGAGGTTGTTCAGGACCATGGTCAAGGAGCTAGGCCAATGTTCAGCCAAATGCATCGACGTTAAGCAGCGTACTTCTTGCACTACTGATTTTTCTATATGAGGCCCCATCA
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| CDS seq | ATGAGCTCCCTTTCTGCCGCAGCCTCCGTTACCTCGAGCCTCCTGCGCTACCGCTGCGCACCATCACGCTTGATCTTGTGCCGCCGCCCATTCCTGGCTAGCGCCCGGTCCCGCACCCGCTCACTCACCGTCGCGGCCATCACGGCGGCTGTGCGGCGCGGTGACCTCGCTGGCGCGGATGAGGCGTTCGCATCCACGCCACGGAAGACCACGGCCACCTACAACTGCCTCCTTGCCGTCTACGCCAGGGCGTCCGGCCGCCTCGCGGACGTGCGCCACCTGTTCAACAGAATATCGACCCTGGATGTCGTCTCATACAACACGCTCCTCTCGTGCCACATCGCCAGCGGCGACGCCGATGGCGCCCGGAGGCTCTTCGCATCGATGCGGGTCAGGGACGTCGCGTCCTAG
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| Protein seq | MSSLSAAASVTSSLLRYRCAPSRLILCRRPFLASARSRTRSLTVAAITAAVRRGDLAGADEAFASTPRKTTATYNCLLAVYARASGRLADVRHLFNRISTLDVVSYNTLLSCHIASGDADGARRLFASMRVRDVAS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_04g0007210 | OsIR64_04g0007210.02 | Chr04 | 13255911 | 13256347 | + | NAM | ||
| CDS seq | ATGGTGTCGGAGCTGTTAAAGAGCGGGGCCGTGGAGGAGGCCAAGGTTGTGTTCCTAGCGATGCCGGTGAGGAACTCCGTTTCCTGGAACGCCATGATTTGCCTGCTCGGAGACATGAGCGTGGTGGAGGAGAATGCGCCGGAGAAGGGGGACACTGTTCTGTGGACTGCGATGGTGTCGGGGTACATGGATATCGACAATGCGGTGAAGGGCATCGAATACTTTGAGGCAATGCCAGTGAGGAACTTGGTTTCATGGAATGGTGTAGTTGCTGGGTATGTGAAGAATTCACATGCGGATGATGCTTTGAGGTTGTTCAGGACCATGGTCAAGGAGCTAGGCCAATGTTCAGCCAAATGCATCGACGTTAAGCAGCGTACTTCTTGCACTACTGATTTTTCTATATGA
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| Protein seq | MVSELLKSGAVEEAKVVFLAMPVRNSVSWNAMICLLGDMSVVEENAPEKGDTVLWTAMVSGYMDIDNAVKGIEYFEAMPVRNLVSWNGVVAGYVKNSHADDALRLFRTMVKELGQCSAKCIDVKQRTSCTTDFSI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_04g0007210 | OsIR64_04g0007210.01 | Chr04 | 13255478 | 13255904 | + | NAM | ||
| CDS seq | ATGAGCTCCCTTTCTGCCGCAGCCTCCGTTACCTCGAGCCTCCTGCGCTACCGCTGCGCACCATCACGCTTGATCTTGTGCCGCCGCCCATTCCTGGCTAGCGCCCGGTCCCGCACCCGCTCACTCACCGTCGCGGCCATCACGGCGGCTGTGCGGCGCGGTGACCTCGCTGGCGCGGATGAGGCGTTCGCATCCACGCCACGGAAGACCACGGCCACCTACAACTGCCTCCTTGCCGTCTACGCCAGGGCGTCCGGCCGCCTCGCGGACGTGCGCCACCTGTTCAACAGAATATCGACCCTGGATGTCGTCTCATACAACACGCTCCTCTCGTGCCACATCGCCAGCGGCGACGCCGATGGCGCCCGGAGGCTCTTCGCATCGATGCGGGTCAGGGACGTCGCGTCCTAG
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| Protein seq | MSSLSAAASVTSSLLRYRCAPSRLILCRRPFLASARSRTRSLTVAAITAAVRRGDLAGADEAFASTPRKTTATYNCLLAVYARASGRLADVRHLFNRISTLDVVSYNTLLSCHIASGDADGARRLFASMRVRDVAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.576127 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007460 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0219000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007220 | RBH | 0.249065 | 0.218042 | 0.504156 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013520 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013490 | SBH | 0.0 | 2.837857 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007180 | RBH | 0.0 | 0.0 | 0.495429 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007260 | RBH | 0.0 | 0.0 | 0.526987 |
