Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_04g0007460 | OGI:04045400 | 6/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr04:14517895-14518764 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgagctccctttctgccgcagcctccgttacctcgagcctcctgcgctaccgctgcgcaccatgtcatcagccttcaagcacgcttgatcttgtgccgccgcccattcctggctagcgcccggtcccgcacccgctcactcaccgtcgcggccatcacggcggctgtgcggcgcggtgacctcgctggcgcggatgaggcgttcgcatccacgccacggaagaccacggccacctacaactgcctccttgccgtctacgccagggcgtccggccgcctcgcggacgtgcgccacctgttcaacagaatatcgaccctggatgtcgtctcatacaacacgctcctctcgtgccacatcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgcgggtcagggacgtcgcgtcctagaaaaccatggtgtcggagctgttaaagagcggggccgtggaggaggccaaggttgtgttcctagcgatgccggtgaggaactccgtttcctggaacgccatggtttccagatttgcctgctcggagacatgagcgtggtggaggagtacggttcaggaatgcgccggagaaggggGAcactgttctgtggactgcgatggtgtcggggtacatggatatcgacaatgcggtgaagggcatcgaatactttgaggcaatgccagtgaggaacttggtttcatggaatggtgtagttgctgggtatgtgaagaattcacatgcggatgatgctttgaggttgttcaggaccatggtcaaggagctaggccaatgttcagccaaatgcatcgacgttaagcagcgtacttcttgcactactgatttttctatatgaggccccatca
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| CDS seq | atgagctccctttctgccgcagcctccgttacctcgagcctcctgcgctaccgctgcgcaccatcacgcttgatcttgtgccgccgcccattcctggctagcgcccggtcccgcacccgctcactcaccgtcgcggccatcacggcggctgtgcggcgcggtgacctcgctggcgcggatgaggcgttcgcatccacgccacggaagaccacggccacctacaactgcctccttgccgtctacgccagggcgtccggccgcctcgcggacgtgcgccacctgttcaacagaatatcgaccctggatgtcgtctcatacaacacgctcctctcgtgccacatcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgcgggtcagggacgtcgcgtcctag
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| Protein seq | MSSLSAAASVTSSLLRYRCAPSRLILCRRPFLASARSRTRSLTVAAITAAVRRGDLAGADEAFASTPRKTTATYNCLLAVYARASGRLADVRHLFNRISTLDVVSYNTLLSCHIASGDADGARRLFASMRVRDVAS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0007460 | OsPr106_04g0007460.02 | Chr04 | 14518328 | 14518764 | + | NAM | ||
| CDS seq | atggtgtcggagctgttaaagagcggggccgtggaggaggccaaggttgtgttcctagcgatgccggtgaggaactccgtttcctggaacgccatgatttgcctgctcggagacatgagcgtggtggaggagaatgcgccggagaaggggGAcactgttctgtggactgcgatggtgtcggggtacatggatatcgacaatgcggtgaagggcatcgaatactttgaggcaatgccagtgaggaacttggtttcatggaatggtgtagttgctgggtatgtgaagaattcacatgcggatgatgctttgaggttgttcaggaccatggtcaaggagctaggccaatgttcagccaaatgcatcgacgttaagcagcgtacttcttgcactactgatttttctatatga
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| Protein seq | MVSELLKSGAVEEAKVVFLAMPVRNSVSWNAMICLLGDMSVVEENAPEKGDTVLWTAMVSGYMDIDNAVKGIEYFEAMPVRNLVSWNGVVAGYVKNSHADDALRLFRTMVKELGQCSAKCIDVKQRTSCTTDFSI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_04g0007460 | OsPr106_04g0007460.01 | Chr04 | 14517895 | 14518321 | + | NAM | ||
| CDS seq | atgagctccctttctgccgcagcctccgttacctcgagcctcctgcgctaccgctgcgcaccatcacgcttgatcttgtgccgccgcccattcctggctagcgcccggtcccgcacccgctcactcaccgtcgcggccatcacggcggctgtgcggcgcggtgacctcgctggcgcggatgaggcgttcgcatccacgccacggaagaccacggccacctacaactgcctccttgccgtctacgccagggcgtccggccgcctcgcggacgtgcgccacctgttcaacagaatatcgaccctggatgtcgtctcatacaacacgctcctctcgtgccacatcgccagcggcgacgccgatggcgcccggaggctcttcgcatcgatgcgggtcagggacgtcgcgtcctag
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| Protein seq | MSSLSAAASVTSSLLRYRCAPSRLILCRRPFLASARSRTRSLTVAAITAAVRRGDLAGADEAFASTPRKTTATYNCLLAVYARASGRLADVRHLFNRISTLDVVSYNTLLSCHIASGDADGARRLFASMRVRDVAS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0414800 | SBH | 0.328206 | 0.152854 | 0.923417 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0414800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013770 | SBH | 3.962089 | 197.885071 | 20.479073 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014620 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014380 | SBH | 0.213997 | 0.000000 | 0.336431 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013950 | SBH | 0.032051 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007470 | RBH | 2.851716 | 0.000000 | 6.638305 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0219000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007210 | RBH | 0.0 | 0.0 | 0.576127 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0333100 | SBH | 0.5781245 | 0.943058 | 2.867038 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013740 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000510 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007500 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007180 | RBH | 0.0 | 0.0 | 0.495429 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007260 | RBH | 0.0 | 0.0 | 0.526987 |
