Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0013740 | OGI:04066160 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:22813438-22815662 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggttgcctcctctatcatgacggagatgctatcaacctcctggcatatctgctcgatcagagggtgattgctgtcgtttgaagagaatgtgacgacctcccccttcagctcgatccagctacacccggtctccttcttcagccctcgttccttcatgaaccctctgacgctggcagcgctgCTccacatctctttggcggcatatatgttcgacaggagcgtgtacattcctccgtcggagggtctagccttcaggacatttctggcaatgatctctccaagctggatttccccatgagagttgcacgcgctaaacagagtctcccacgcggtcgttcgatggtcagatgggattctcctggtaaaatcataagcctggtgtataaagcctgatcttcccaagagatcaaccatgcaggagtagtgatcagatcttgggaccaagttccagtcttcttgcatgctgcgaaaatggtagcagccttcatataggtaccccttatgtgcgcaagcagacaatatgcttaggaaggtcgcatgatctggtctaaatccagcttttgtcatcatgtcaaaaactttcaaagcttcatcagcaagaccatgataagcgtatgttgcgatcatggcattccatgtcactgtgtcccgctgcaaaatcagctcgaaaacttgggaagcttcactgattagcccacattttgagtacattgatatcaatgagctcatcaccAaagcatcatgctcaaagccagttttgattgcccagaggtgtaccatttttccacatccgagggaaacgagagatgcacatatggaaataacaacgctcaaggtggcttggtcaggtttgagtcctccgcggatcatttctgacagcaaagatagtgctccttcatctttgtacccagagatcaatgtgttccaTgagatcgcatccttgtttggcgctcttcgaaaccaggcatttgcactatccatgtccccttgttgaacatatccttgcaagatcgcattccacgatatctgatccctgtctggcatctcagagaacaacttcaaagcatcatccaacctatcattccgcacaaaaccatccatcatcgtgttccaagcaacagtatcacgatgcggcatgtctttgaacaccttccatgcagcatcgacagatccgttctgcaaatacccacgcataatagcagtcctagatagaacgtccttctcaggcatctcatcaaacagacgctgcgcgatccccatactgccagctcgcgcatagcctgtgatcataacattccaagaaacagggttccttgtctgcatctggccaaacagcacctccgcagccctcatgtaaccaagttcaacatagcctgacagcaatgcattgcacacagaagtcggaggtgatggcatgctgtcaaaGagctccctagcttcgcggacatgcttcctcttgatataaccagagatcatcgtcagccacgacacatcgtccctccatggcatcatgtcgaataattcgcgtgccctcttgaccatcccgttgcgcgcataccctgacaccatcgcgttccaggaaacaacattcctgtcaggtatccggttgaagagctccctggcctcggcgaccctaccgcagcgggcgtagccggtcaagagcgcggcccacgagacagagttcctcacgggcattgcatcgaacaccttgcgggcttccgcgagcatccggttcctgatgagcccagagaccatgcagttccaggtgaacacgttccgttccgacatttcgtcgaacacccggcgcgcggcggctaccctgcccgcgcggaagtgctcgttgatggcggtattcgactggaagacgtcgccggcagcatgtcgctgcggcggcccgaggctgcagaagcggcggagaagaaggcagcggaacgggcgcagaaggttctggatggctcccaccatcgtactcaggagggatccgaagggagagatcgatgcgtggccgcgaccgcacgcagagacaccatcaggcggtgggtggggggacgttgctctgcctgtgcgcgtgcgctgcgggcagagagctccaccaggcgggcgccacgggacgccgcgcgaagtcgccgattagctccccgccgcccgcgccgccatcgatagcttcaccgagccggccgccacgagaggagggaggagggaggggaggtgaaGggggaggc
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| CDS seq | atggtgggagccatccagaaccttctgcgcccgttccgctgccttcttctccgccgcttctgcagcctcgggccgccgcagcgacatgctgccggcgacgtcttccagtcgaataccgccatcaacgagcacttccgcgcgggcagggtagccgccgcgcgccgggtgttcgacgaaatgtcggaacggaacgtgttcacctggaactgcatggtctctgggctcatcaggaaccggatgctcgcggaagcccgcaaggtgttcgatgcaatgcccgtgaggaactctgtctcgtgggccgcgctcttgaccggctacgcccgctgcggtagggtcgccgaggccagggagctcttcaaccggatacctgacaggaatgttgtttcctggaacgcgatggtgtcagggtatgcgcgcaacgggatggtcaagagggcacgcgaattattcgacatgatgccatggagggacgatgtgtcgtggctgacgatgatctctggttatatcaagaggaagcatgtccgcgaagctagggagctCtttgacagcatgccatcacctccgacttctgtgtgcaatgcattgctgtcaggctatgttgaacttggttacatgagggctgcggaggtgctgtttggccagatgcagacaaggaaccctgtttcttggaatgttatgatcacaggctatgcgcgagctggcagtatggggatcgcgcagcgtctgtttgatgagatgcctgagaaggacgttctatctaggactgctattatgcgtgggtatttgcagaacggatctgtcgatgctgcatggaaggtgttcaaagacatgccgcatcgtgatactgttgcttggaacacgatgatggatggttttgtgcggaatgataggttggatgatgctttgaagttgttctctgagatgccagacagggatcagatatcgtggaatgcgatcttgcaaggatatgttcaacaaggggacatggatagtgcaaatgcctggtttcgaagagcgccaaacaaggatgcgatctcAtggaacacattgatctctgggtacaaagatgaaggagcactatctttgctgtcagaaatgatccgcggaggactcaaacctgaccaagccaccttgagcgttgttatttccatatgtgcatctctcgtttccctcggatgtggaaaaatggtacacctctgggcaatcaaaactggctttgagcatgatgcttTggtgatgagctcattgatatcaatgtactcaaaatgtgggctaatcagtgaagcttcccaagttttcgagctgattttgcagcgggacacagtgacatggaatgccatgatcgcaacatacgcttatcatggtcttgctgatgaagctttgaaagtttttgacatgatgacaaaagctggatttagaccagatcatgcgaccttcctaagcatattgtctgcttgcgcacataaggggtacctatatgaaggctgctaccattttcgcagcatgcaagaagactggaacttggtcccaagatctgatcactactcctgcatggttgatctcttgggaagatcaggctttatacaccaggcttatgattttaccaggagaatcccatctgaccatcgaacgaccgcgtgggagactctgtttagcgcgtgcaactctcatggggaaatccagcttggagagatcattgccagaaatgtcctgaaggctagaccctccgacggaggaatgtacacgctcctgtcgaacatatatgccgccaaagagatgtggAGcagcgctgccagcgtcagagggttcatgaaggaacgagggctgaagaaggagaccgggtgtagctggatcgagctgaagggggaggtcgtcacattctcttcaaacgacagcaatcaccctctgatcgagcagatatgccaggaggttgatagcatctccgtcatgatagaggaggcaacctga
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| Protein seq | MVGAIQNLLRPFRCLLLRRFCSLGPPQRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQICQEVDSISVMIEEAT |
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| Function | Pentatricopeptide repeat-containing protein At4g02750 [UniProtKB/Swiss-Prot:Q9SY02] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0013740 | OsLima_04g0013740.01 | Chr04 | 22813438 | 22815662 | - | NAM | ||
| CDS seq | atggtgggagccatccagaaccttctgcgcccgttccgctgccttcttctccgccgcttctgcagcctcgggccgccgcagcgacatgctgccggcgacgtcttccagtcgaataccgccatcaacgagcacttccgcgcgggcagggtagccgccgcgcgccgggtgttcgacgaaatgtcggaacggaacgtgttcacctggaactgcatggtctctgggctcatcaggaaccggatgctcgcggaagcccgcaaggtgttcgatgcaatgcccgtgaggaactctgtctcgtgggccgcgctcttgaccggctacgcccgctgcggtagggtcgccgaggccagggagctcttcaaccggatacctgacaggaatgttgtttcctggaacgcgatggtgtcagggtatgcgcgcaacgggatggtcaagagggcacgcgaattattcgacatgatgccatggagggacgatgtgtcgtggctgacgatgatctctggttatatcaagaggaagcatgtccgcgaagctagggagctCtttgacagcatgccatcacctccgacttctgtgtgcaatgcattgctgtcaggctatgttgaacttggttacatgagggctgcggaggtgctgtttggccagatgcagacaaggaaccctgtttcttggaatgttatgatcacaggctatgcgcgagctggcagtatggggatcgcgcagcgtctgtttgatgagatgcctgagaaggacgttctatctaggactgctattatgcgtgggtatttgcagaacggatctgtcgatgctgcatggaaggtgttcaaagacatgccgcatcgtgatactgttgcttggaacacgatgatggatggttttgtgcggaatgataggttggatgatgctttgaagttgttctctgagatgccagacagggatcagatatcgtggaatgcgatcttgcaaggatatgttcaacaaggggacatggatagtgcaaatgcctggtttcgaagagcgccaaacaaggatgcgatctcAtggaacacattgatctctgggtacaaagatgaaggagcactatctttgctgtcagaaatgatccgcggaggactcaaacctgaccaagccaccttgagcgttgttatttccatatgtgcatctctcgtttccctcggatgtggaaaaatggtacacctctgggcaatcaaaactggctttgagcatgatgcttTggtgatgagctcattgatatcaatgtactcaaaatgtgggctaatcagtgaagcttcccaagttttcgagctgattttgcagcgggacacagtgacatggaatgccatgatcgcaacatacgcttatcatggtcttgctgatgaagctttgaaagtttttgacatgatgacaaaagctggatttagaccagatcatgcgaccttcctaagcatattgtctgcttgcgcacataaggggtacctatatgaaggctgctaccattttcgcagcatgcaagaagactggaacttggtcccaagatctgatcactactcctgcatggttgatctcttgggaagatcaggctttatacaccaggcttatgattttaccaggagaatcccatctgaccatcgaacgaccgcgtgggagactctgtttagcgcgtgcaactctcatggggaaatccagcttggagagatcattgccagaaatgtcctgaaggctagaccctccgacggaggaatgtacacgctcctgtcgaacatatatgccgccaaagagatgtggAGcagcgctgccagcgtcagagggttcatgaaggaacgagggctgaagaaggagaccgggtgtagctggatcgagctgaagggggaggtcgtcacattctcttcaaacgacagcaatcaccctctgatcgagcagatatgccaggaggttgatagcatctccgtcatgatagaggaggcaacctga
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| Protein seq | MVGAIQNLLRPFRCLLLRRFCSLGPPQRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQICQEVDSISVMIEEAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0432800 | RBH | 0.233924 | 0.126552 | 0.423139 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g35305 | RBH | 0.204456 | 0.085568 | 0.120697 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0432800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013770 | RBH | 3.962089 | 197.885071 | 20.479073 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0014620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0014380 | RBH | 0.213997 | 0.000000 | 0.336431 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013950 | RBH | 0.032051 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0014270 | SBH | 24.092354 | 285.535187 | 85.981483 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0337200 | RBH | 3.446212 | 6.8382955 | 3.7606095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0013190 | RBH | 0.0 | 0.0 | 0.055317 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0333100 | RBH | 0.5781245 | 0.943058 | 2.867038 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0021010 | SBH | 0.043827 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0013520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013490 | RBH | 0.0 | 2.837857 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0014060 | RBH | 0.082732 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0014300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G013370 | RBH | 0.0 | 0.0 | 0.116021 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0013390 | RBH | 0.000000 | 3.216880 | 0.674951 |
