Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_04g0014300 OGI:04066160 | 15/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr04:22400730-22402954
Gene Symbol -
DNA seq

tcaggttgcctcctctatcatgacggagatgctatcaacctcctggcatatctgctcgatcagagggtgattgctgtcgttTGaagagaatgtgacgacctcccccttcagctcgatccagctacacccggtctccttcttcagccctcgttccttcatgaaccctctgacgctggcagcgctgctccacatctctttggcGgcatatatgttcgacaggagcgtgtacattcctccgtcggagggtctagccttcaggacatttctggcaatgatctctccaagctggatttCcccatgagagttgcacgcgctaaacagagtctcccacgcggtcgttcgatggtcagatgggattctcctGgtaaaatcataagcctggtgtataaagcctgatcttcccaagagatcaaccatgcaggagtagtgatcagatcttgggaccaagttccagtcttcttgcatgctgcgaaaatggtagcagccttcatataggtaccccttatgtgcgcaagcagacaatatgcttaggaaggtcgcatgatctGgtctaaatccagcttttgtcatcatgtcAaaaactttcaaagcttcatcagcAagaccatgataagcgtatgttgcgatcatggcattccatgtcactgtgtcccgctgcaaaatcagctcgaaaacttgggaagcttcactgattagcccacattttgagtacattgatatcAatgagctcatcaccaaagcatcatgctcaaagccagttttgattgcccagaggtgtaccatttttccacatccgagggaaacgagagatgcacatatggaaataacaacgctcaaggtggcttggtcaggtttgagtcctccgcggatcatttctgacagcaaagatagtgctccttcatcTttgtacccagagatcaatgtgttccatgagatcgcatccttgtttggcgctcttcgaaaCcaggcatttgcactatccatgtccccttgttgaacatatccttgcaagatcgcattccacgatatctgatccctgtctggcatctcagagaacaacttcagagcatcatccaacctatcattccgcacAaaaccatccatcatcgtgttccaagcaacagtatcacgatgcggcatgtctttgaacaccTtccatgcagcatcgAcagatccgttctgcaaatacccacgcataatagcagtcctagatagaacgtccttctcaggcatctcatcaaacagacgctgcgcgatccccatactgccagctcgcgcatagcctgtgatcataacattccaagaaacagggttccttgtctgcatctGgccaaacagcacctccgcagCcctcatgtaaccaagttcaacatagcctgacagcaatgcattgcacacagaagtcggaggtgatggcatgctgtcaaagagctccctagcttcgcggacatgcttcctcttgatataaccagagatcatcgtcagccacgacacatcgtccctccatggcatcatgtcgaataattcgcgtgccctcttgaccatcccgttgcgcgcataccctgacaccatcgcgttccaggaaacaacattcctgtcaggtatccGgttgaagagctccctggcctcggcgaccctaccgcagcgggcgtagccggtcaagagcgcggcccacgagacagagTtcctcacGggcattgcatcgaacaccttgcgggcttccgcgagcatccggttcctgatgaGcccagagaccatgcagttccaGgtgaacacgttccgttccgacatttcgtcgaacacccggcgcgcggcggctaccctgcccgcgcggaagtgctcgttgatggcggtattcgactggaagacgtcgccggcagcatgtcgctgcggcggcccgaggctgcagaagcggcggagaagaaggcagcggaacgggcgcagaaggttctggatggctcccaccatcgtactcaggagggatCcgaagggagagatcgatgcgtggccgcgaccgcacgcagagacaccatcaggcggtgggtggggggacgttgctctgcctgtgcgcgtgcgctgcgggcagagagctccaccaggcgggcgccacgggacgccgcgcgaagtcgccgattagctccccgccgcccgcgccgccatcgatagcttcaccgagccggccgccacgagaggagggaGgagggaggggaggtgaagggcgaggc

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CDS seq

atggtgggagccatccagaaccttctgcgcccgttccgctgccttcttctccgccgcttctgcagcctcgggccgccgcagcgacatgctgccggcgacgtcttccagtcgaataccgccatcaacgagcacttccgcgcgggcagggtagccgccgcgcgccgggtgttcgacgaaatgtcggaacggaacgtgttcacCtggaactgcatggtctctgggCtcatcaggaaccggatgctcgcggaagcccgcaaggtgttcgatgcaatgccCgtgaggaActctgtctcgtgggccgcgctcttgaccggctacgcccgctgcggtagggtcgccgaggccagggagctcttcaacCggatacctgacaggaatgttgtttcctggaacgcgatggtgtcagggtatgcgcgcaacgggatggtcaagagggcacgcgaattattcgacatgatgccatggagggacgatgtgtcgtggctgacgatgatctctggttatatcaagaggaagcatgtccgcgaagctagggagctctttgacagcatgccatcacctccgacttctgtgtgcaatgcattgctgtcaggctatgttgaacttggttacatgaggGctgcggaggtgctgtttggcCagatgcagacaaggaaccctgtttcttggaatgttatgatcacaggctatgcgcgagctggcagtatggggatcgcgcagcgtctgtttgatgagatgcctgagaaggacgttctatctaggactgctattatgcgtgggtatttgcagaacggatctgTcgatgctgcatggaAggtgttcaaagacatgccgcatcgtgatactgttgcttggaacacgatgatggatggtttTgtgcggaatgataggttggatgatgctctgaagttgttctctgagatgccagacagggatcagatatcgtggaatgcgatcttgcaaggatatgttcaacaaggggacatggatagtgcaaatgcctgGtttcgaagagcgccaaacaaggatgcgatctcatggaacacattgatctctgggtacaaAgatgaaggagcactatctttgctgtcagaaatgatccgcggaggactcaaacctgaccaagccaccttgagcgttgttatttccatatgtgcatctctcgtttccctcggatgtggaaaaatggtacacctctgggcaatcaaaactggctttgagcatgatgctttggtgatgagctcatTgatatcaatgtactcaaaatgtgggctaatcagtgaagcttcccaagttttcgagctgattttgcagcgggacacagtgacatggaatgccatgatcgcaacatacgcttatcatggtctTgctgatgaagctttgaaagttttTgacatgatgacaaaagctggatttagacCagatcatgcgaccttcctaagcatattgtctgcttgcgcacataaggggtacctatatgaaggctgctaccattttcgcagcatgcaagaagactggaacttggtcccaagatctgatcactactcctgcatggttgatctcttgggaagatcaggctttatacaccaggcttatgattttacCaggagaatcccatctgaccatcgaacgaccgcgtgggagactctgtttagcgcgtgcaactctcatgggGaaatccagcttggagagatcattgccagaaatgtcctgaaggctagaccctccgacggaggaatgtacacgctcctgtcgaacatatatgcCgccaaagagatgtggagcagcgctgccagcgtcagagggttcatgaaggaacgagggctgaagaaggagaccgggtgtagctggatcgagctgaagggggaggtcgtcacattctcttCAaacgacagcaatcaccctctgatcgagcagatatgccaggaggttgatagcatctccgtcatgatagaggaggcaacctga

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Protein seq

MVGAIQNLLRPFRCLLLRRFCSLGPPQRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQICQEVDSISVMIEEAT

Function Pentatricopeptide repeat-containing protein At4g02750 [UniProtKB/Swiss-Prot:Q9SY02]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_04g0014300 OsLaMu_04g0014300.01 Chr04 22400730 22402954 - NAM
CDS seq

atggtgggagccatccagaaccttctgcgcccgttccgctgccttcttctccgccgcttctgcagcctcgggccgccgcagcgacatgctgccggcgacgtcttccagtcgaataccgccatcaacgagcacttccgcgcgggcagggtagccgccgcgcgccgggtgttcgacgaaatgtcggaacggaacgtgttcacCtggaactgcatggtctctgggCtcatcaggaaccggatgctcgcggaagcccgcaaggtgttcgatgcaatgccCgtgaggaActctgtctcgtgggccgcgctcttgaccggctacgcccgctgcggtagggtcgccgaggccagggagctcttcaacCggatacctgacaggaatgttgtttcctggaacgcgatggtgtcagggtatgcgcgcaacgggatggtcaagagggcacgcgaattattcgacatgatgccatggagggacgatgtgtcgtggctgacgatgatctctggttatatcaagaggaagcatgtccgcgaagctagggagctctttgacagcatgccatcacctccgacttctgtgtgcaatgcattgctgtcaggctatgttgaacttggttacatgaggGctgcggaggtgctgtttggcCagatgcagacaaggaaccctgtttcttggaatgttatgatcacaggctatgcgcgagctggcagtatggggatcgcgcagcgtctgtttgatgagatgcctgagaaggacgttctatctaggactgctattatgcgtgggtatttgcagaacggatctgTcgatgctgcatggaAggtgttcaaagacatgccgcatcgtgatactgttgcttggaacacgatgatggatggtttTgtgcggaatgataggttggatgatgctctgaagttgttctctgagatgccagacagggatcagatatcgtggaatgcgatcttgcaaggatatgttcaacaaggggacatggatagtgcaaatgcctgGtttcgaagagcgccaaacaaggatgcgatctcatggaacacattgatctctgggtacaaAgatgaaggagcactatctttgctgtcagaaatgatccgcggaggactcaaacctgaccaagccaccttgagcgttgttatttccatatgtgcatctctcgtttccctcggatgtggaaaaatggtacacctctgggcaatcaaaactggctttgagcatgatgctttggtgatgagctcatTgatatcaatgtactcaaaatgtgggctaatcagtgaagcttcccaagttttcgagctgattttgcagcgggacacagtgacatggaatgccatgatcgcaacatacgcttatcatggtctTgctgatgaagctttgaaagttttTgacatgatgacaaaagctggatttagacCagatcatgcgaccttcctaagcatattgtctgcttgcgcacataaggggtacctatatgaaggctgctaccattttcgcagcatgcaagaagactggaacttggtcccaagatctgatcactactcctgcatggttgatctcttgggaagatcaggctttatacaccaggcttatgattttacCaggagaatcccatctgaccatcgaacgaccgcgtgggagactctgtttagcgcgtgcaactctcatgggGaaatccagcttggagagatcattgccagaaatgtcctgaaggctagaccctccgacggaggaatgtacacgctcctgtcgaacatatatgcCgccaaagagatgtggagcagcgctgccagcgtcagagggttcatgaaggaacgagggctgaagaaggagaccgggtgtagctggatcgagctgaagggggaggtcgtcacattctcttCAaacgacagcaatcaccctctgatcgagcagatatgccaggaggttgatagcatctccgtcatgatagaggaggcaacctga

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Protein seq

MVGAIQNLLRPFRCLLLRRFCSLGPPQRHAAGDVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGLKPDQATLSVVISICASLVSLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLVPRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARNVLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSSNDSNHPLIEQICQEVDSISVMIEEAT

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0432800 RBH 0.233924 0.126552 0.423139
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g35305 RBH 0.204456 0.085568 0.120697
Nipponbare | IRGSP 1.0 | RAP-db Os04g0432800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0013770 RBH 3.962089 197.885071 20.479073
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0014620 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0014380 RBH 0.213997 0.000000 0.336431
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0013950 RBH 0.032051 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0014270 SBH 24.092354 285.535187 85.981483
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0337200 RBH 3.446212 6.8382955 3.7606095
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0013190 RBH 0.0 0.0 0.055317
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0333100 RBH 0.5781245 0.943058 2.867038
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0013740 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0013520 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0013490 RBH 0.0 2.837857 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0014060 RBH 0.082732 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0026260 RBH 0.0 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G013370 RBH 0.0 0.0 0.116021
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0013390 RBH 0.000000 3.216880 0.674951
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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