Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0584700 | OGI:04087690 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:29535821-29536764 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATAATCAAAGGTAGAGATAAATAACACGAGAAAATGAAATTTCCAGAGTTGCAGATTATGTTACTTCTCTCAATCAATTTCTGGGCTACAAAAATGTATTCCGGAGAAAAGTTCCGTGATCACCAATAGTCCCCGCAAGAACAAGAACCACTTTTGAAGTGGTGAAACCGAACACCATCTCGGATCACAAACTCCCGATCAGTCACAGAAGATATCAGCTTGATCACCGTGTGGCAGTCCCCGCAAATGCGCAGGTTCTTCATGATGTGAATAGGCATCCAAGCAGGCAAGCTCATGATCCCAAACGCCACAGCCAGCTTCTCGCTGTGATGAATCTCAGACCGTGGCGACTCGGTCCTCACATAACCGAGATGTGCAATCTTTTCCATGAGTTCATCCATCTTGTTACGAATTGCAATCACTTGTGGGTGGCTCACATCATCTGCTTTGAAGACGTGAACCTTGTTTTCGACTTCCATCCAGCTATAGCCCGGGTTTTTCTTTATCCCTTTGTCCCTCATTAGCTTCCTAACTTGTGCAGAATCATCTGACTTCCCAGCATCCGAATATATCTTGGCTAGAAGCATGTAGCTTCCAGAATCAGGTGAGTCCAGCTCGAACACGTGCTTCGCTGCCAATTCTGCAAGTTCATCGTTGCCATGTATCTTACAGGCACTAAGAAGAGCTCCCCAAACCTCAGCAGTTGGTTTCATGGGCATTTTATCAATGAGATCCTTGGCTTCAGTCAAATGCCCTGCACGGCCAAGAAGGTCCACCATGCAGGAGAAATGCTCCAACCCTGGAGATATGCCATGGACTCTTGTCATCATATCAAAGTAGAGTTTCCCTTCCTGCACAAGTCCAGAGTGGCTACAGCCTGACAGAACTGCGACATAGCTTATGTAGTCAGGTTTTGCACCTTTGCTCAGCATATCATCAAATG
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| CDS seq | TTTGATGATATGCTGAGCAAAGGTGCAAAACCTGACTACATAAGCTATGTCGCAGTTCTGTCAGGCTGTAGCCACTCTGGACTTGTGCAGGAAGGGAAACTCTACTTTGATATGATGACAAGAGTCCATGGCATATCTCCAGGGTTGGAGCATTTCTCCTGCATGGTGGACCTTCTTGGCCGTGCAGGGCATTTGACTGAAGCCAAGGATCTCATTGATAAAATGCCCATGAAACCAACTGCTGAGGTTTGGGGAGCTCTTCTTAGTGCCTGTAAGATACATGGCAACGATGAACTTGCAGAATTGGCAGCGAAGCACGTGTTCGAGCTGGACTCACCTGATTCTGGAAGCTACATGCTTCTAGCCAAGATATATTCGGATGCTGGGAAGTCAGATGATTCTGCACAAGTTAGGAAGCTAATGAGGGACAAAGGGATAAAGAAAAACCCGGGCTATAGCTGGATGGAAGTCGAAAACAAGGTTCACGTCTTCAAAGCAGATGATGTGAGCCACCCACAAGTGATTGCAATTCGTAACAAGATGGATGAACTCATGGAAAAGATTGCACATCTCGGTTATGTGAGGACCGAGTCGCCACGGTCTGAGATTCATCACAGCGAGAAGCTGGCTGTGGCGTTTGGGATCATGAGCTTGCCTGCTTGGATGCCTATTCACATCATGAAGAACCTGCGCATTTGCGGGGACTGCCACACGGTGATCAAGCTGATATCTTCTGTGACTGATCGGGAGTTTGTGATCCGAGATGGTGTTCGGTTTCACCACTTCAAAAGTGGTTCTTGTTCTTGCGGGGACTATTGGTGA
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| Protein seq | FDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At2g22070 [UniProtKB/Swiss-Prot:Q9SHZ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0584700 | Os04t0584700-01 | Chr04 | 29535821 | 29536764 | - | irgsp1_rep | ||
| CDS seq | TTTGATGATATGCTGAGCAAAGGTGCAAAACCTGACTACATAAGCTATGTCGCAGTTCTGTCAGGCTGTAGCCACTCTGGACTTGTGCAGGAAGGGAAACTCTACTTTGATATGATGACAAGAGTCCATGGCATATCTCCAGGGTTGGAGCATTTCTCCTGCATGGTGGACCTTCTTGGCCGTGCAGGGCATTTGACTGAAGCCAAGGATCTCATTGATAAAATGCCCATGAAACCAACTGCTGAGGTTTGGGGAGCTCTTCTTAGTGCCTGTAAGATACATGGCAACGATGAACTTGCAGAATTGGCAGCGAAGCACGTGTTCGAGCTGGACTCACCTGATTCTGGAAGCTACATGCTTCTAGCCAAGATATATTCGGATGCTGGGAAGTCAGATGATTCTGCACAAGTTAGGAAGCTAATGAGGGACAAAGGGATAAAGAAAAACCCGGGCTATAGCTGGATGGAAGTCGAAAACAAGGTTCACGTCTTCAAAGCAGATGATGTGAGCCACCCACAAGTGATTGCAATTCGTAACAAGATGGATGAACTCATGGAAAAGATTGCACATCTCGGTTATGTGAGGACCGAGTCGCCACGGTCTGAGATTCATCACAGCGAGAAGCTGGCTGTGGCGTTTGGGATCATGAGCTTGCCTGCTTGGATGCCTATTCACATCATGAAGAACCTGCGCATTTGCGGGGACTGCCACACGGTGATCAAGCTGATATCTTCTGTGACTGATCGGGAGTTTGTGATCCGAGATGGTGTTCGGTTTCACCACTTCAAAAGTGGTTCTTGTTCTTGCGGGGACTATTGGTGA
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| Protein seq | FDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0584700 | RBH | 0.258627 | 0.265228 | 0.632115 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49520 | RBH | 0.293126 | 0.474604 | 0.340593 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0697500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024420 | RBH | 0.027289 | 1.201523 | 0.580777 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025170 | RBH | 0.0 | 0.978281 | 0.435071 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024860 | RBH | 0.385665 | 0.000000 | 0.303157 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024640 | RBH | 0.000000 | 0.051212 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024830 | RBH | 0.474754 | 0.0 | 0.228372 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0466100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023600 | RBH | 0.043880 | 0.066512 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0469300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024080 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023880 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024010 | RBH | 2.094268 | 2.407756 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024410 | RBH | 0.250506 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024610 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023860 | RBH | 0.105860 | 1.516171 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023760 | RBH | 0.841871 | 0.000000 | 0.359392 |
