Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsZS97_04G0469300 OGI:04087690 | 16/16 Zhenshan 97 | ZS97RS3 | HZAU Chr04:31197227-31199887
Gene Symbol -
DNA seq

TCACCAATAGTCCCCGCAAGAACAAGAACCACTTTTGAAGTGGTGAAACCGAACACCATCTCGGATCACAAACTCCCGATCAGTCACAGAAGATATCAGCTTGATCACCGTGTGGCAGTCCCCGCAAATGCGCAGGTTCTTCATGATGTGAATAGGCATCCAAGCAGGCAAGCTCATGATCCCAAACGCCACAGCCAGCTTCTCGCTGTGATGAATCTCAGACCGTGGCGACTCGGTCCTCACATAACCGAGATGTGCAATCTTTTCCATGAGTTCATCCAGCTTGTTACGAATTGCAATCACTTGTGGGTGGCTCACATCATCTGCTTTGAAGACGTGAACCTTGTTTTCGACTTCCATCCAGCTATAGCCCGGGTTTTTCTTTATCCCTTTGTCCCTCATTAGCTTCCTAACTTGTGCAGAATCATCTGACTTCCCAGCATCCGAATATATCTTGGCTAGAAGCATGTAGCTTCCAGAATCAGGTGAGTCCAGCTCGAACACGTGCTTCGCTGCCAATTCTGCAAGTTCATCGTTGCCATGTATCTTACAGGCACTAAGAAGAGCTCCCCAAACCTCAGCAGTTGGTTTCATGGGCATTTTATCAATGAGATCCTTGGCTTCAGTCAAATGCCCTGCACGGCCAAGAAGGTCCACCATGCAGGAGAAATGCTCCAACCCTGGAGATATGCCATGGACTCTTGTCATCATATCAAAGTAGAGTTTCCCTTCCTGCACAAGTCCAGAGTGGCTACAGCCTGACAGAACTGCGACATAGCTTATGTAGTCAGGTTTTGCACCTTTGCTCAGCATATCATCAAATGTCTTTGCAGCTTGCTTCCCCATGCCATGTTGTGAATAACCAGTGATCATGGCATTCCATGAAACCACATCCTTTCCATTTAGGAGGTCAAATAGTTTTTGCGCCTCAGATATCCTGCCACATTTGGAGTACATTGTGATAGCAGCATTTGCGACTGACACGTTTAAAATGAGACCTGCCTTCACAGTATGACCAATAATCTGATCTCCAAGTTTATTTGCACCTATATCTGCACACCCTCTGAACAATGTAACATAAGTAACCCAGTCAGGAGTGACATCCTTCTGACTTAGCATTGCACTGTACATCTTGAGGCCATCTTCCTCAGCTCCATGTTGTATATATGCCCCCAACATTGCATTCCATGTAATGGCATTCCTTGTGTCCATGCCATCAAAGAATTCACGAGCCTTAATGATGTTCCCAATTTGAGAATATGCAGTAATCATGCTAGTCCATGATACAATATCCCTTTCAGACATTGAACTGAATACAAATTCAGCATTCTGGAGATCACCGCACTTCGCATACAACGAGATGAGAGAATTGGAGACGACGATAGCTCGATTGTGTCCACTTTTCAGACAGAGCGAGTGCAGCTGCCTACCAAGGCACAAATCCATCCTGTTGAAACAGCCACTTATTAGAGTTGCCAGTGCAAATTGATCAATTGCCATCAACTCAGCTCTCATCTGATTGAACAACTCGACAGATTTACTGAAGCACTCATACTGCAAAGATCCCCCTATAAGAACTGTCCATGATACACTGTTGCGATCTTGTAAAGAATTGAAAACTCTCTTTGCTTCCTTGAAACTGCCACATTTTGCATATAGTTCAATTAGAGCACTGGCAACATAAGGGTCAATTTGTGGTAGGCTACGGATAACCTTAGCATGGAGTTGCTTACCCCATCCCAAAGAAAACAATCTAGCACATGCAGTCAGAGAACTAGTGTATGTTGTTGAATCAAGACGCACACCTTTTCTGTGCATTTCTACAACCAAACCAAGGGCTTCTCTGACTCGCCCGCTCTGGGACAACGCTGCTATCATCATATTCCATGAAACAACATCTCGTTCAGCCATGTCCTCAAAATACTCAATAGCATGATCAATACCATATAACTTGGCATACCCTGCTAGCATACTGTTCCGACAGAAAATAGTTGGCCTCTCAATCTGACTGAACAATCTTGAAGCAAAATCGACATACCCACATCTTACAAACATGTCAACAAGAGCAGTCTCAACGTCCGGGTCACCCCAGAAATCAAACTTCCAAAACAACCCAAGCAGCTGCGGTGCTAATTCACGGCAGCCAAGAGCGCCGCAAGACTTCATAACACAGCAAAATGTGAAGGCGTTTGGCAACGAATCCCCACTTCGATGCATTGAGACGAAGGTTTCCAGACCATCCAAGAACCGGCGGGCCTGGAAGTATCCGGACATGAGCGTGTTCCACGAGGCGACATCCCTCCTAGGCATTCTGTCAAACAGTTCCTCGGCGTCGCTCAGACTGCCTTGTTTGGCATACCCGTTCATCATTATGTTGTGCGTGATGACATTGGGCTCCTTGATATCCGCACGCAGCAATCGGCGAGCGTCGGAGAGGGCTCCGCAGGAGAAGTAGGCATGGAGGAGGGTGTTCTGGAGGAAGACGGCGGACGCTAGGCCCACCGTGACGAGGCGGCCGTGCAGAGCGCGCGCCCCGGCGAGCGCGCCGCGGGATCCACACGAGCGGAGCGCGTCCGCGAGCGCCTGCGTGACGGCCATGTGGGAGGAGGCGGCAGCGGGAGGAGGAGGAGGAGACGGCGGCGGCCATGGGCGCTCCACCAT

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CDS seq

ATGGTGGAGCGCCCATGGCCGCCGCCGTCTCCTCCTCCTCCTCCCGCTGCCGCCTCCTCCCACATGGCCGTCACGCAGGCGCTCGCGGACGCGCTCCGCTCGTGTGGATCCCGCGGCGCGCTCGCCGGGGCGCGCGCTCTGCACGGCCGCCTCGTCACGGTGGGCCTAGCGTCCGCCGTCTTCCTCCAGAACACCCTCCTCCATGCCTACTTCTCCTGCGGAGCCCTCTCCGACGCTCGCCGATTGCTGCGTGCGGATATCAAGGAGCCCAATGTCATCACGCACAACATAATGATGAACGGGTATGCCAAACAAGGCAGTCTGAGCGACGCCGAGGAACTGTTTGACAGAATGCCTAGGAGGGATGTCGCCTCGTGGAACACGCTCATGTCCGGATACTTCCAGGCCCGCCGGTTCTTGGATGGTCTGGAAACCTTCGTCTCAATGCATCGAAGTGGGGATTCGTTGCCAAACGCCTTCACATTTTGCTGTGTTATGAAGTCTTGCGGCGCTCTTGGCTGCCGTGAATTAGCACCGCAGCTGCTTGGGTTGTTTTGGAAGTTTGATTTCTGGGGTGACCCGGACGTTGAGACTGCTCTTGTTGACATGTTTGTAAGATGTGGGTATGTCGATTTTGCTTCAAGATTGTTCAGTCAGATTGAGAGGCCAACTATTTTCTGTCGGAACAGTATGCTAGCAGGGTATGCCAAGTTATATGGTATTGATCATGCTATTGAGTATTTTGAGGACATGGCTGAACGAGATGTTGTTTCATGGAATATGATGATAGCAGCGTTGTCCCAGAGCGGGCGAGTCAGAGAAGCCCTTGGTTTGGTTGTAGAAATGCACAGAAAAGGTGTGCGTCTTGATTCAACAACATACACTAGTTCTCTGACTGCATGTGCTAGATTGTTTTCTTTGGGATGGGGTAAGCAACTCCATGCTAAGGTTATCCGTAGCCTACCACAAATTGACCCTTATGTTGCCAGTGCTCTAATTGAACTATATGCAAAATGTGGCAGTTTCAAGGAAGCAAAGAGAGTTTTCAATTCTTTACAAGATCGCAACAGTGTATCATGGACAGTTCTTATAGGGGGATCTTTGCAGTATGAGTGCTTCAGTAAATCTGTCGAGTTGTTCAATCAGATGAGAGCTGAGTTGATGGCAATTGATCAATTTGCACTGGCAACTCTAATAAGTGGCTGTTTCAACAGGATGGATTTGTGCCTTGGTAGGCAGCTGCACTCGCTCTGTCTGAAAAGTGGACACAATCGAGCTATCGTCGTCTCCAATTCTCTCATCTCGTTGTATGCGAAGTGCGGTGATCTCCAGAATGCTGAATTTGTATTCAGTTCAATGTCTGAAAGGGATATTGTATCATGGACTAGCATGATTACTGCATATTCTCAAATTGGGAACATCATTAAGGCTCGTGAATTCTTTGATGGCATGGACACAAGGAATGCCATTACATGGAATGCAATGTTGGGGGCATATATACAACATGGAGCTGAGGAAGATGGCCTCAAGATGTACAGTGCAATGCTAAGTCAGAAGGATGTCACTCCTGACTGGGTTACTTATGTTACATTGTTCAGAGGGTGTGCAGATATAGGTGCAAATAAACTTGGAGATCAGATTATTGGTCATACTGTGAAGGCAGGTCTCATTTTAAACGTGTCAGTCGCAAATGCTGCTATCACAATGTACTCCAAATGTGGCAGGATATCTGAGGCGCAAAAACTATTTGACCTCCTAAATGGAAAGGATGTGGTTTCATGGAATGCCATGATCACTGGTTATTCACAACATGGCATGGGGAAGCAAGCTGCAAAGACATTTGATGATATGCTGAGCAAAGGTGCAAAACCTGACTACATAAGCTATGTCGCAGTTCTGTCAGGCTGTAGCCACTCTGGACTTGTGCAGGAAGGGAAACTCTACTTTGATATGATGACAAGAGTCCATGGCATATCTCCAGGGTTGGAGCATTTCTCCTGCATGGTGGACCTTCTTGGCCGTGCAGGGCATTTGACTGAAGCCAAGGATCTCATTGATAAAATGCCCATGAAACCAACTGCTGAGGTTTGGGGAGCTCTTCTTAGTGCCTGTAAGATACATGGCAACGATGAACTTGCAGAATTGGCAGCGAAGCACGTGTTCGAGCTGGACTCACCTGATTCTGGAAGCTACATGCTTCTAGCCAAGATATATTCGGATGCTGGGAAGTCAGATGATTCTGCACAAGTTAGGAAGCTAATGAGGGACAAAGGGATAAAGAAAAACCCGGGCTATAGCTGGATGGAAGTCGAAAACAAGGTTCACGTCTTCAAAGCAGATGATGTGAGCCACCCACAAGTGATTGCAATTCGTAACAAGCTGGATGAACTCATGGAAAAGATTGCACATCTCGGTTATGTGAGGACCGAGTCGCCACGGTCTGAGATTCATCACAGCGAGAAGCTGGCTGTGGCGTTTGGGATCATGAGCTTGCCTGCTTGGATGCCTATTCACATCATGAAGAACCTGCGCATTTGCGGGGACTGCCACACGGTGATCAAGCTGATATCTTCTGTGACTGATCGGGAGTTTGTGATCCGAGATGGTGTTCGGTTTCACCACTTCAAAAGTGGTTCTTGTTCTTGCGGGGACTATTGGTGA

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Protein seq

MVERPWPPPSPPPPPAAASSHMAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW

Function Pentatricopeptide repeat-containing protein At2g22070 [UniProtKB/Swiss-Prot:Q9SHZ8]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsZS97_04G0469300 OsZS97_04T0469300.1 Chr04 31197227 31199887 - makerRMon
CDS seq

ATGGTGGAGCGCCCATGGCCGCCGCCGTCTCCTCCTCCTCCTCCCGCTGCCGCCTCCTCCCACATGGCCGTCACGCAGGCGCTCGCGGACGCGCTCCGCTCGTGTGGATCCCGCGGCGCGCTCGCCGGGGCGCGCGCTCTGCACGGCCGCCTCGTCACGGTGGGCCTAGCGTCCGCCGTCTTCCTCCAGAACACCCTCCTCCATGCCTACTTCTCCTGCGGAGCCCTCTCCGACGCTCGCCGATTGCTGCGTGCGGATATCAAGGAGCCCAATGTCATCACGCACAACATAATGATGAACGGGTATGCCAAACAAGGCAGTCTGAGCGACGCCGAGGAACTGTTTGACAGAATGCCTAGGAGGGATGTCGCCTCGTGGAACACGCTCATGTCCGGATACTTCCAGGCCCGCCGGTTCTTGGATGGTCTGGAAACCTTCGTCTCAATGCATCGAAGTGGGGATTCGTTGCCAAACGCCTTCACATTTTGCTGTGTTATGAAGTCTTGCGGCGCTCTTGGCTGCCGTGAATTAGCACCGCAGCTGCTTGGGTTGTTTTGGAAGTTTGATTTCTGGGGTGACCCGGACGTTGAGACTGCTCTTGTTGACATGTTTGTAAGATGTGGGTATGTCGATTTTGCTTCAAGATTGTTCAGTCAGATTGAGAGGCCAACTATTTTCTGTCGGAACAGTATGCTAGCAGGGTATGCCAAGTTATATGGTATTGATCATGCTATTGAGTATTTTGAGGACATGGCTGAACGAGATGTTGTTTCATGGAATATGATGATAGCAGCGTTGTCCCAGAGCGGGCGAGTCAGAGAAGCCCTTGGTTTGGTTGTAGAAATGCACAGAAAAGGTGTGCGTCTTGATTCAACAACATACACTAGTTCTCTGACTGCATGTGCTAGATTGTTTTCTTTGGGATGGGGTAAGCAACTCCATGCTAAGGTTATCCGTAGCCTACCACAAATTGACCCTTATGTTGCCAGTGCTCTAATTGAACTATATGCAAAATGTGGCAGTTTCAAGGAAGCAAAGAGAGTTTTCAATTCTTTACAAGATCGCAACAGTGTATCATGGACAGTTCTTATAGGGGGATCTTTGCAGTATGAGTGCTTCAGTAAATCTGTCGAGTTGTTCAATCAGATGAGAGCTGAGTTGATGGCAATTGATCAATTTGCACTGGCAACTCTAATAAGTGGCTGTTTCAACAGGATGGATTTGTGCCTTGGTAGGCAGCTGCACTCGCTCTGTCTGAAAAGTGGACACAATCGAGCTATCGTCGTCTCCAATTCTCTCATCTCGTTGTATGCGAAGTGCGGTGATCTCCAGAATGCTGAATTTGTATTCAGTTCAATGTCTGAAAGGGATATTGTATCATGGACTAGCATGATTACTGCATATTCTCAAATTGGGAACATCATTAAGGCTCGTGAATTCTTTGATGGCATGGACACAAGGAATGCCATTACATGGAATGCAATGTTGGGGGCATATATACAACATGGAGCTGAGGAAGATGGCCTCAAGATGTACAGTGCAATGCTAAGTCAGAAGGATGTCACTCCTGACTGGGTTACTTATGTTACATTGTTCAGAGGGTGTGCAGATATAGGTGCAAATAAACTTGGAGATCAGATTATTGGTCATACTGTGAAGGCAGGTCTCATTTTAAACGTGTCAGTCGCAAATGCTGCTATCACAATGTACTCCAAATGTGGCAGGATATCTGAGGCGCAAAAACTATTTGACCTCCTAAATGGAAAGGATGTGGTTTCATGGAATGCCATGATCACTGGTTATTCACAACATGGCATGGGGAAGCAAGCTGCAAAGACATTTGATGATATGCTGAGCAAAGGTGCAAAACCTGACTACATAAGCTATGTCGCAGTTCTGTCAGGCTGTAGCCACTCTGGACTTGTGCAGGAAGGGAAACTCTACTTTGATATGATGACAAGAGTCCATGGCATATCTCCAGGGTTGGAGCATTTCTCCTGCATGGTGGACCTTCTTGGCCGTGCAGGGCATTTGACTGAAGCCAAGGATCTCATTGATAAAATGCCCATGAAACCAACTGCTGAGGTTTGGGGAGCTCTTCTTAGTGCCTGTAAGATACATGGCAACGATGAACTTGCAGAATTGGCAGCGAAGCACGTGTTCGAGCTGGACTCACCTGATTCTGGAAGCTACATGCTTCTAGCCAAGATATATTCGGATGCTGGGAAGTCAGATGATTCTGCACAAGTTAGGAAGCTAATGAGGGACAAAGGGATAAAGAAAAACCCGGGCTATAGCTGGATGGAAGTCGAAAACAAGGTTCACGTCTTCAAAGCAGATGATGTGAGCCACCCACAAGTGATTGCAATTCGTAACAAGCTGGATGAACTCATGGAAAAGATTGCACATCTCGGTTATGTGAGGACCGAGTCGCCACGGTCTGAGATTCATCACAGCGAGAAGCTGGCTGTGGCGTTTGGGATCATGAGCTTGCCTGCTTGGATGCCTATTCACATCATGAAGAACCTGCGCATTTGCGGGGACTGCCACACGGTGATCAAGCTGATATCTTCTGTGACTGATCGGGAGTTTGTGATCCGAGATGGTGTTCGGTTTCACCACTTCAAAAGTGGTTCTTGTTCTTGCGGGGACTATTGGTGA

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Protein seq

MVERPWPPPSPPPPPAAASSHMAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0 0 0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0584700 RBH 0.258627 0.265228 0.632115
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g49520 RBH 0.293126 0.474604 0.340593
Nipponbare | IRGSP 1.0 | RAP-db Os04g0584700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0024420 RBH 0.027289 1.201523 0.580777
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0025170 RBH 0.0 0.978281 0.435071
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0024860 RBH 0.385665 0.000000 0.303157
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0024640 RBH 0.000000 0.051212 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0024830 RBH 0.474754 0.0 0.228372
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0466100 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0023600 RBH 0.043880 0.066512 0.000000
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0478500 RBH 4.0605285 5.1707135 10.3051105
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0024080 RBH 0.000000 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0023880 RBH 0.000000 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0024010 RBH 2.094268 2.407756 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0024410 RBH 0.250506 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0024610 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G023860 RBH 0.105860 1.516171 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0023760 RBH 0.841871 0.000000 0.359392
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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