Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0000490 | OGI:04001520 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:632389-633982 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctcaacctacatttgtttgagcttcaacatcttgcagtacactgcaaatctcagcatactgaggatgctgactgccaccagcaacaaactcatgcacctcgcctttgagctcgatcgagctgcacccaggagtcttcttcacctgcatgctgttcatctccctcCTctcccgggcaagaccaatccaatcctgtgctttcgcgtacatgctggacagcatcactctcccccaagggtcatctggatccaacctggtgagctcttctgccgcaatcttgccgagttccatattgccatgaactttgcacgcgctcaagaatgcaccccaaataaccgtgttgggatccattggcattgttcttatcatgctatatgcttcctgcagtcgcccaacgcggccAAGaagatcaatcatgcaaccatagtgttcaatcttgggtgtgattctaaattttgcctccatggagtagaagtagccaagaccttcgtctaccaaacctccatgtgcacaagcatttaggaccccaacaaacgtgacatcatccgggcatatgccattatcctgcatcatgtcaaacattctcaaagcatcagtggcgcggccgtgcattgccagcccacagatcacggttgtccatgagaacaggtccctcttcctaggtgccttctcaaacacctgtagggcattatcgatgcttccgcatttgcagtacatgtctatcaggcaccgatccagatagccatcatcattcatcctgttcctctcaatatatgcatggacccaaatcccggtctccaaacaacccgcgccggcacaagcaccgaggatagtgctcatcgtaggcacattaggatgcaccgcacacgatgacggcgacaccatctgacggaacaagccaagtgcctccctgaaccggccagcaacacagtacccggccaacaccgtgttccaggacacaacatctctcctcggcattgcaaggaacagctcataagccgtgtcaactttcccgtgcctggcatactgatgcaacatggcgttccatgtaatggtgctcctcgacggcatgtcatcgaacaccctcctagaaaccggcagctcgccactctcaccgtagacccttatcagctcggtggagacaaacacatctgggacaatgccgctggtcacgacgagagcatggatcatcttgcctggattcctcctagccgtccaagagccagcgccatggcatgccccgagcgcaactgccacagcgacattgtccgggaagacaccatccgccaccatgtCcccgaatacggcgatcgcttgagctgcctgcccagacgcgacgtgcgcccgggccatggcggttcgtggaacaaggccttgctcgggcatttcatcgaacagcctgcgcgcgtgatccgggctgccgagtgcggcgtacgcggagaggagcgccgtcgggaggtgcgcgccgacgtggaggaggcctgccttgaggaggaggcagtggatggaggacgccgacaggtgggccccatgcaccgccggcgagagcgacttgatgaggcggagggcggtggaggagagggtgagtGggtgcat
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| CDS seq | atgcaccCactcaccctctcctccaccgccctccgcctcatcaagtcgctctcgccggcggtgcatggggcccacctgtcggcgtcctccatccactgcctcctcctcaaggcaggcctcctccacgtcggcgcgcacctcccgacggcgctcctctccgcgtacgccgcactcggcagcccggatcacgcgcgcaggctgttcgatgaaatgcccgagcaaggccttgttccacgaaccgccatggcccgggcgcacgtcgcgtctgggcaggcagctcaagcgatcgccgtattcgggGacatggtggcggatggtgtcttcccggacaatgtcgctgtggcagttgcgctcggggcatgccatggcgctggctcttggacggctaggaggaatccaggcaagatgatccatgctctcgtcgtgaccagcggcattgtcccagatgtgtttgtctccaccgagctgataagggtctacggtgagagtggcgagctgccggtttctaggagggtgttcgatgacatgccgtcgaggagcaccattacatggaacgccatgttgcatcagtatgccaggcacgggaaagttgacacggcttatgagctgttccttgcaatgccgaggagagatgttgtgtcctggaacacggtgttggccgggtactgtgttgctggccggttcagggaggcacttggcttgttccgtcagatggtgtcgccgtcatcgtgtgcggtgcatcctaatgtgcctacgatgagcactatcctcggtgcttgtgccggcgcgggttgtttggagaccgggatttgggtccatgcatatattgagaggaacaggatgaatgatgatggctatctggatcggtgcctgatagacatgtactgcaaatgcggaagcatcgataatgccctacaggtgtttgagaaggcacctaggaagagggacctgttctcatggacaaccgtgatctgtgggctggcaatgcacggccgcgccactgatgctttgagaatgtttgacatgatgcaggataatggcatatgcccggatgatgtcacgtttgttggggtcctaaatgcttgtgcacatggaggtttggtagacgaaggtcttggctacttctactccatggaggcaaaatttagaatcacacccaagattgaacactatggttgcatgattgatcttCTTggccgcgttgggcgactgcaggaagcatatagcatgataagaacaatgccaatggatcccaacacggttatttggggtgcattcttgagcgcgtgcaaagttcatggcaatatggaactcggcaagattgcggcagaagagctcaccaggttggatccagatgacccttgggggagagtgatgctgtccagcatgtacgcgaaagcacaggattggattggtcttgcccgggagAGgagggagatgaacagcatgcaggtgaagaagactcctgggtgcagctcgatcgagctcaaaggcgaggtgcatgagtttgttgctggtggcagtcagcatcctcagtatgctgagatttgcagtgtactgcaagatgttgaagctcaaacaaatgtaggttga
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| Protein seq | MHPLTLSSTALRLIKSLSPAVHGAHLSASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVLAGYCVAGRFREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTFVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVEAQTNVG |
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| Function | Pentatricopeptide repeat-containing protein At3g29230 [UniProtKB/Swiss-Prot:Q9LS72] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000490 | OsLima_04g0000490.01 | Chr04 | 632389 | 633982 | - | NAM | ||
| CDS seq | atgcaccCactcaccctctcctccaccgccctccgcctcatcaagtcgctctcgccggcggtgcatggggcccacctgtcggcgtcctccatccactgcctcctcctcaaggcaggcctcctccacgtcggcgcgcacctcccgacggcgctcctctccgcgtacgccgcactcggcagcccggatcacgcgcgcaggctgttcgatgaaatgcccgagcaaggccttgttccacgaaccgccatggcccgggcgcacgtcgcgtctgggcaggcagctcaagcgatcgccgtattcgggGacatggtggcggatggtgtcttcccggacaatgtcgctgtggcagttgcgctcggggcatgccatggcgctggctcttggacggctaggaggaatccaggcaagatgatccatgctctcgtcgtgaccagcggcattgtcccagatgtgtttgtctccaccgagctgataagggtctacggtgagagtggcgagctgccggtttctaggagggtgttcgatgacatgccgtcgaggagcaccattacatggaacgccatgttgcatcagtatgccaggcacgggaaagttgacacggcttatgagctgttccttgcaatgccgaggagagatgttgtgtcctggaacacggtgttggccgggtactgtgttgctggccggttcagggaggcacttggcttgttccgtcagatggtgtcgccgtcatcgtgtgcggtgcatcctaatgtgcctacgatgagcactatcctcggtgcttgtgccggcgcgggttgtttggagaccgggatttgggtccatgcatatattgagaggaacaggatgaatgatgatggctatctggatcggtgcctgatagacatgtactgcaaatgcggaagcatcgataatgccctacaggtgtttgagaaggcacctaggaagagggacctgttctcatggacaaccgtgatctgtgggctggcaatgcacggccgcgccactgatgctttgagaatgtttgacatgatgcaggataatggcatatgcccggatgatgtcacgtttgttggggtcctaaatgcttgtgcacatggaggtttggtagacgaaggtcttggctacttctactccatggaggcaaaatttagaatcacacccaagattgaacactatggttgcatgattgatcttCTTggccgcgttgggcgactgcaggaagcatatagcatgataagaacaatgccaatggatcccaacacggttatttggggtgcattcttgagcgcgtgcaaagttcatggcaatatggaactcggcaagattgcggcagaagagctcaccaggttggatccagatgacccttgggggagagtgatgctgtccagcatgtacgcgaaagcacaggattggattggtcttgcccgggagAGgagggagatgaacagcatgcaggtgaagaagactcctgggtgcagctcgatcgagctcaaaggcgaggtgcatgagtttgttgctggtggcagtcagcatcctcagtatgctgagatttgcagtgtactgcaagatgttgaagctcaaacaaatgtaggttga
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| Protein seq | MHPLTLSSTALRLIKSLSPAVHGAHLSASSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDVVSWNTVLAGYCVAGRFREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTFVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMDPNTVIWGAFLSACKVHGNMELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIELKGEVHEFVAGGSQHPQYAEICSVLQDVEAQTNVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.049047 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0110500 | RBH | 0.286014 | 0.587276 | 0.699824 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g01990 | RBH | 0.192664 | 0.393454 | 0.179447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0110500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000490 | RBH | 0.0 | 0.0 | 0.397871 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000510 | RBH | 0.0 | 0.0 | 0.244045 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000470 | RBH | 0.332527 | 2.357796 | 0.781569 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000540 | RBH | 0.0 | 0.002696 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0000480 | RBH | 0.656733 | 0.0 | 2.818742 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0008500 | RBH | 0.868936 | 2.18215 | 0.345159 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0000500 | RBH | 0.0 | 0.100626 | 0.154636 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0010800 | RBH | 1.0995205 | 1.5061055 | 3.302123 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000510 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000480 | RBH | 0.115637 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0000490 | RBH | 0.0 | 0.867049 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000510 | RBH | 0.0 | 0.0 | 0.554318 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0000460 | RBH | 0.797180 | 0.0 | 0.0 |
