Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0018330 | OGI:02001240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:19718785-19722720 | ||||||||
| Gene Symbol | OsGIRL1, OsGIRL1-1, OsGIRL1-2, OsGIRL1-3 | ||||||||||
| DNA seq | tgcaatttgcgcgggctgccacgctaatttgttatactatacaagacacaaccaatacgtacgtgtttatcagatgtatgttcccttctctaaaaaaatgtatgtatgtccatgtacgttgtacaattcaccctactcatcaactgaggcatactttttttcattccatccgtgaagcgacgcattgatagcatgtattttggttgctgcttgcttcatgttcaatcgttcagatggtgatgggcgtgtgcaagaaagtgctacttgtagcaaagacaccaacaattgatagattgtatcttcggataccatgttatctcgagataagttgttgcattcttccttcagacgaacatcgatgacttggaatatttgatccggaaagtttctgtccacaaagctgacaatgtcaagtccgtccgtgaacataggatctgttggcctttttcctgtaaaaatctccaacaacattatcccaaaactataaacatctcctagtgttgatgcatggcccccgcctccgtactctgaaaaggaaaacatgcacaaagtatatagtactattgatttgattgcataaaaagaggaatgctaataagaaactaaaataaatctatgagaatatatagcttcaaatacctggaggaatataaccaattgttcccttcagaccaattgtgctaactgagccttggtacgttgactgagaatcaagatatagacgtgcaattccaaaatctcccagaagagcattcatatcgtcatctagaaggatgttgcttggcttcagatcactatgcacaatggttcttccgcagtcgtggtgcaaataatccaaagcatcagcaatgttaacagctatgcttattctctgagttaagtttagataattcggagttttctcatcctctttgtgatgtagccacatatccaggttcccattaggcatgtaatcaaaaactaaagctttgaaaactctgcccgtattatctcctgttgagcaagcagttctgatagaaagaagatttcgatgttgaatgcttcttagtgcttcacattctgacatgaagcttctctctgctccatgcatctcaaggtcgaaaaccttcacagccacttctattttgctttcctttaattttcctcgatataccgaaccgtagcttcccctcccaatgaggttgaattccgagaagtcccttgttgcttgagcaagatcattataagaaactttttcaaaatgctcaccaaaagaaggctctgataatgatgttcttcttgacctcttcttcccaaggagtaaaaagtagatcaataatatgagagacatgaagccaaatattgggatcaatattttgattaatctgtttacgcttattgctctatgagaaacaggacatggacgcattcgcaaagtcatggctcctccacatagtcctgcattgccatccagtgaaaccaccgtcgaattgtcgaatataccatttcgtggtatctctccttcgaagttgttgtaagataggtctagcttagtgagaagctttagatcatttagaacagctggcaaggggcccgacaaagcattgtgggaaagattgagaaggctcaagctatttagatttgtgaaagtggttgggatatttcctgtaagaacattttgttccatttgaaggataactaaattttgacattggcctaaagtttcaggaattgcaccactgaatttatttgatgaaagatctagtatgtacaattgtttgaggttacctaactctggaggtatgctaccctggagattattgttgctaagatccaactccaacagtggttgaagccttcccaagttgggtgttacaataccgtcgaatgcattattcgctagatagagccttgtcagctttgtaagattagcaagggagagtggaattgtcccagtgaagttgttggtttcgagatgtaaacttgttagattttcttgctttccaatccactcatcaattggaccagtaaggctgtttgcatctagcccgagttcaattaagcttgtaaggtttcctatgcttgggggaactacacctgataatttattctcactcattagtagatattgaagattgacagacaggttgccaactgaatttggtatgactccttggagctgattatccgtgaatgaaagctgctctagattacggcagttgcttaacgcattaaagaaatcccagccttcattatcacttgcattaagcatattgctctcaacgtttaggcgaatcagccctgaaagcatccccaaagagcttggaacttgaccattgaaattattagaggacaggtctatttgaaataatcctgaagcatttcctagggaagatgggatttgaccttcgaaggagtttcctgctaaggatatatatacgaggttggggagagcatcgccaatgttagacggcaatgtgttggctagcatatttatcgccaagtctagatattggagggaagatatattaggaaaagtttgtgaaatcccacctgataggttatttccacctagatacaattcctctatgtttggcatttgccaaagctcgtcaggaatttttccggtgagctgaccgtatatgagatcgagtgtttgtaaagtagtgatgtttgtgagcattgttgggatggtcccagtaagattgttctggccaagtctcaaaccaataagcttggagagggagtctatactaggaggaatcacaccagttaggaagttttttgagagatctaagaatagcaaatcggtacaatttgtaagtccatcaggaataacgccttgcaaatggttgcttttcagattaagaaatttcaggcgttggagacggttcagaagaggcaacgggccatcgaagttattatatgagaggtcaagcatgtcaagggatgtcaagtttccaagggagggactaattttccccgctaaacctttgcgggtgagattgagtcccgtgacacgccaaggtcgcgcgtcgctgcagttcacacccttccacctacagaagtgggtgctgatgttccaggtcctcaatgctccgtttggatcgttgacgccctgcttgaaatcgagcagcgagtgcagatcgacactgttctcatgaactgttgcgcagtagacgttgccaacttcgtaaattagcagaaatgccgacagtataggtacagcgaattttgcaagttgtttggtgcgcatcaggtccatggtacctgcgaaaatagaaggccaccaaaattgctaaagatacctatatatcctgctacctccattcaaaaatactcgtcactttgagtttttatttgtaatgtttgatcattcgtcttattcaaaatatttttttaactgagagtcttattcaaaatattaacatttgatcattcgttttatttaaaatattataaaattattatttattttgtttgtgacTtttttttatcaaaagtattttaagtatgacttatctttttttatatttgcactaattttttaaataaatcgaatggtcaaatgttacaagaaaaaagtcaaagcgacatcatatgcatgttataatcatctataacaatcttatagtccggtcgaatttgacaatttgcctgcgactcatgcatttacttgttaactgcttacacaacgtaatcgtgcaaaaggtcagttgtatagagcagagaacaattcgctccaattcccccgcaataaacaaggagcttgtaaattgtacagtaatgactatgaacctatggtttggctttctccaagaagttggattaaatatatgatcaacaaaccatcgatagagagagagagagcagcgtacctttgctctctgcacagaacgccgccttctctgcgtggttttgccggttggtgtgtactttgaactttgagctggatgc
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| CDS seq | atggacctgatgcgcaccaaacaacttgcaaaattcgctgtacctatactgtcggcatttctgctaatttacgaagttggcaacgtctactgcgcaacagttcatgagaacagtgtcgatctgcactcgctgctcgatttcaagcagggcgtcaacgatccaaacggagcattgaggacctggaacatcagcacccacttctgtaggtggaagggtgtgaactgcagcgacgcgcgaccttggcgtgtcacgggactcaatctcacccgcaaaggtttagcggggaaaattagtccctcccttggaaacttgacatcccttgacatgcttgacctctcatataataacttcgatggcccgttgcctcttctgaaccgtctccaacgcctgaaatttcttaatctgaaaagcaaccatttgcaaggcgttattcctgatggacttacaaattgtaccgatttgctattcttagatctctcaaaaaacttcctaactggtgtgattcctcctagtatagactccctctccaagcttattggtttgagacttggccagaacaatcttactgggaccatcccaacaatgctcacaaacatcactactttacaaacactcgatctcatatacggtcagctcaccggaaaaattcctgacgagctttggcaaatgccaaacatagaggaattgtatctaggtggaaataacctatcaggtgggatttcacaaacttttcctaatatatcttccctccaatatctagacttggcgataaatatgctagccaacacattgccgtctaacattggcgatgctctccccaacctcgtatatatatccttagcaggaaactccttcgaaggtcaaatcccatcttccctaggaaatgcttcaggattatttcaaatagacctgtcctctaataatttcaatggtcaagttccaagctctttggggatgctttcagggctgattcgcctaaacgttgagagcaatatgcttaatgcaagtgataatgaaggctgggatttctttaatgcgttaagcaactgccgtaatctagagcagctttcattcacggataatcagctccaaggagtcataccaaattcagttggcaacctgtctgtcaatcttcaatatctactaatgagtgagaataaattatcaggtgtagttcccccaagcataggaaaccttacaagcttaattgaactcgggctagatgcaaacagccttactggtccaattgatgagtggattggaaagcaagaaaatctaacaagtttacatctcgaaaccaacaacttcactgggacaattccactctcccttgctaatcttacaaagctgacaaggctctatctagcgaataatgcattcgacggtattgtaacacccaacttgggaaggcttcaaccactgttggagttggatcttagcaacaataatctccagggtagcatacctccagagttaggtaacctcaaacaattgtacatactagatctttcatcaaataaattcagtggtgcaattcctgaaactttaggccaatgtcaaaatttagttatccttcaaatggaacaaaatgttcttacaggaaatatcccaaccactttcacaaatctaaatagcttgagccttctcaatctttcccacaatgctttgtcgggccccttgccagctgttctaaatgatctaaagcttctcactaagctagacctatcttacaacaacttcgaaggagagataccacgaaatggtatattcgacaattcgacggtggtttcactggatggcaatgcaggactatgtggaggagccatgactttgcgaatgcgtccatgtcctgtttctcatagagcaataagcgtaaacagattaatcaaaatattgatcccaatatttggcttcatgtctctcatattattgatctactttttactccttgggaagaagaggtcaagaagaacatcattatcagagccttcttttggtgagcattttgaaaaagtttcttataatgatcttgctcaagcaacaagggacttctcggaattcaacctcattgggaggggaagctacggttcggtatatcgaggaaaattaaaggaaagcaaaatagaagtggctgtgaaggttttcgaccttgagatgcatggagcagagagaagcttcatgtcagaatgtgaagcactaagaagcattcaacatcgaaatcttctttctatcagaactgcttgctcaacaggagataatacgggcagagttttcaaagctttagtttttgattacatgcctaatgggaacctggatatgtggctacatcacaaagaggatgagaaaactccgaattatctaaacttaactcagagaataagcatagctgttaacattgctgatgctttggattatttgcaccacgactgcggaagaaccattgtgcatagtgatctgaagccaagcaacatccttctagatgacgatatgaatgctcttctgggagattttggaattgcacgtctatatcttgattctcagtcaacgtaccaaggctcagttagcacaattggtctgaagggaacaattggttatattcctccagagtacggaggcgggggccatgcatcaacactaggagatgtttatagttttgggataatgttgttggagatttttacaggaaaaaggccaacagatcctatgttcacggacggacttgacattgtcagctttgtggacagaaactttccggatcaaatattccaagtcatcgatgttcgtctgaaggaagaatgcaacaacttatctcgagataacatggtatccgaagatacaatctatcaattgttggtgtctttgctacaagtagcactttcttgcacacgcccatcaccatctgaacgattgaacatgaagcaagcagcaaccaaaatacatgctatcaatgcgtcgcttcacggatggaatgaaaaaaagtatgcctcagttgatgag
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| Protein seq | MDLMRTKQLAKFAVPILSAFLLIYEVGNVYCATVHENSVDLHSLLDFKQGVNDPNGALRTWNISTHFCRWKGVNCSDARPWRVTGLNLTRKGLAGKISPSLGNLTSLDMLDLSYNNFDGPLPLLNRLQRLKFLNLKSNHLQGVIPDGLTNCTDLLFLDLSKNFLTGVIPPSIDSLSKLIGLRLGQNNLTGTIPTMLTNITTLQTLDLIYGQLTGKIPDELWQMPNIEELYLGGNNLSGGISQTFPNISSLQYLDLAINMLANTLPSNIGDALPNLVYISLAGNSFEGQIPSSLGNASGLFQIDLSSNNFNGQVPSSLGMLSGLIRLNVESNMLNASDNEGWDFFNALSNCRNLEQLSFTDNQLQGVIPNSVGNLSVNLQYLLMSENKLSGVVPPSIGNLTSLIELGLDANSLTGPIDEWIGKQENLTSLHLETNNFTGTIPLSLANLTKLTRLYLANNAFDGIVTPNLGRLQPLLELDLSNNNLQGSIPPELGNLKQLYILDLSSNKFSGAIPETLGQCQNLVILQMEQNVLTGNIPTTFTNLNSLSLLNLSHNALSGPLPAVLNDLKLLTKLDLSYNNFEGEIPRNGIFDNSTVVSLDGNAGLCGGAMTLRMRPCPVSHRAISVNRLIKILIPIFGFMSLILLIYFLLLGKKRSRRTSLSEPSFGEHFEKVSYNDLAQATRDFSEFNLIGRGSYGSVYRGKLKESKIEVAVKVFDLEMHGAERSFMSECEALRSIQHRNLLSIRTACSTGDNTGRVFKALVFDYMPNGNLDMWLHHKEDEKTPNYLNLTQRISIAVNIADALDYLHHDCGRTIVHSDLKPSNILLDDDMNALLGDFGIARLYLDSQSTYQGSVSTIGLKGTIGYIPPEYGGGGHASTLGDVYSFGIMLLEIFTGKRPTDPMFTDGLDIVSFVDRNFPDQIFQVIDVRLKEECNNLSRDNMVSEDTIYQLLVSLLQVALSCTRPSPSERLNMKQAATKIHAINASLHGWNEKKYASVDE |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0018330 | OsNaBo_02g0018330.01 | Chr02 | 19718863 | 19722720 | - | NAM | ||
| CDS seq | atggacctgatgcgcaccaaacaacttgcaaaattcgctgtacctatactgtcggcatttctgctaatttacgaagttggcaacgtctactgcgcaacagttcatgagaacagtgtcgatctgcactcgctgctcgatttcaagcagggcgtcaacgatccaaacggagcattgaggacctggaacatcagcacccacttctgtaggtggaagggtgtgaactgcagcgacgcgcgaccttggcgtgtcacgggactcaatctcacccgcaaaggtttagcggggaaaattagtccctcccttggaaacttgacatcccttgacatgcttgacctctcatataataacttcgatggcccgttgcctcttctgaaccgtctccaacgcctgaaatttcttaatctgaaaagcaaccatttgcaaggcgttattcctgatggacttacaaattgtaccgatttgctattcttagatctctcaaaaaacttcctaactggtgtgattcctcctagtatagactccctctccaagcttattggtttgagacttggccagaacaatcttactgggaccatcccaacaatgctcacaaacatcactactttacaaacactcgatctcatatacggtcagctcaccggaaaaattcctgacgagctttggcaaatgccaaacatagaggaattgtatctaggtggaaataacctatcaggtgggatttcacaaacttttcctaatatatcttccctccaatatctagacttggcgataaatatgctagccaacacattgccgtctaacattggcgatgctctccccaacctcgtatatatatccttagcaggaaactccttcgaaggtcaaatcccatcttccctaggaaatgcttcaggattatttcaaatagacctgtcctctaataatttcaatggtcaagttccaagctctttggggatgctttcagggctgattcgcctaaacgttgagagcaatatgcttaatgcaagtgataatgaaggctgggatttctttaatgcgttaagcaactgccgtaatctagagcagctttcattcacggataatcagctccaaggagtcataccaaattcagttggcaacctgtctgtcaatcttcaatatctactaatgagtgagaataaattatcaggtgtagttcccccaagcataggaaaccttacaagcttaattgaactcgggctagatgcaaacagccttactggtccaattgatgagtggattggaaagcaagaaaatctaacaagtttacatctcgaaaccaacaacttcactgggacaattccactctcccttgctaatcttacaaagctgacaaggctctatctagcgaataatgcattcgacggtattgtaacacccaacttgggaaggcttcaaccactgttggagttggatcttagcaacaataatctccagggtagcatacctccagagttaggtaacctcaaacaattgtacatactagatctttcatcaaataaattcagtggtgcaattcctgaaactttaggccaatgtcaaaatttagttatccttcaaatggaacaaaatgttcttacaggaaatatcccaaccactttcacaaatctaaatagcttgagccttctcaatctttcccacaatgctttgtcgggccccttgccagctgttctaaatgatctaaagcttctcactaagctagacctatcttacaacaacttcgaaggagagataccacgaaatggtatattcgacaattcgacggtggtttcactggatggcaatgcaggactatgtggaggagccatgactttgcgaatgcgtccatgtcctgtttctcatagagcaataagcgtaaacagattaatcaaaatattgatcccaatatttggcttcatgtctctcatattattgatctactttttactccttgggaagaagaggtcaagaagaacatcattatcagagccttcttttggtgagcattttgaaaaagtttcttataatgatcttgctcaagcaacaagggacttctcggaattcaacctcattgggaggggaagctacggttcggtatatcgaggaaaattaaaggaaagcaaaatagaagtggctgtgaaggttttcgaccttgagatgcatggagcagagagaagcttcatgtcagaatgtgaagcactaagaagcattcaacatcgaaatcttctttctatcagaactgcttgctcaacaggagataatacgggcagagttttcaaagctttagtttttgattacatgcctaatgggaacctggatatgtggctacatcacaaagaggatgagaaaactccgaattatctaaacttaactcagagaataagcatagctgttaacattgctgatgctttggattatttgcaccacgactgcggaagaaccattgtgcatagtgatctgaagccaagcaacatccttctagatgacgatatgaatgctcttctgggagattttggaattgcacgtctatatcttgattctcagtcaacgtaccaaggctcagttagcacaattggtctgaagggaacaattggttatattcctccagagtacggaggcgggggccatgcatcaacactaggagatgtttatagttttgggataatgttgttggagatttttacaggaaaaaggccaacagatcctatgttcacggacggacttgacattgtcagctttgtggacagaaactttccggatcaaatattccaagtcatcgatgttcgtctgaaggaagaatgcaacaacttatctcgagataacatggtatccgaagatacaatctatcaattgttggtgtctttgctacaagtagcactttcttgcacacgcccatcaccatctgaacgattgaacatgaagcaagcagcaaccaaaatacatgctatcaatgcgtcgcttcacggatggaatgaaaaaaagtatgcctcagttgatgag
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| Protein seq | MDLMRTKQLAKFAVPILSAFLLIYEVGNVYCATVHENSVDLHSLLDFKQGVNDPNGALRTWNISTHFCRWKGVNCSDARPWRVTGLNLTRKGLAGKISPSLGNLTSLDMLDLSYNNFDGPLPLLNRLQRLKFLNLKSNHLQGVIPDGLTNCTDLLFLDLSKNFLTGVIPPSIDSLSKLIGLRLGQNNLTGTIPTMLTNITTLQTLDLIYGQLTGKIPDELWQMPNIEELYLGGNNLSGGISQTFPNISSLQYLDLAINMLANTLPSNIGDALPNLVYISLAGNSFEGQIPSSLGNASGLFQIDLSSNNFNGQVPSSLGMLSGLIRLNVESNMLNASDNEGWDFFNALSNCRNLEQLSFTDNQLQGVIPNSVGNLSVNLQYLLMSENKLSGVVPPSIGNLTSLIELGLDANSLTGPIDEWIGKQENLTSLHLETNNFTGTIPLSLANLTKLTRLYLANNAFDGIVTPNLGRLQPLLELDLSNNNLQGSIPPELGNLKQLYILDLSSNKFSGAIPETLGQCQNLVILQMEQNVLTGNIPTTFTNLNSLSLLNLSHNALSGPLPAVLNDLKLLTKLDLSYNNFEGEIPRNGIFDNSTVVSLDGNAGLCGGAMTLRMRPCPVSHRAISVNRLIKILIPIFGFMSLILLIYFLLLGKKRSRRTSLSEPSFGEHFEKVSYNDLAQATRDFSEFNLIGRGSYGSVYRGKLKESKIEVAVKVFDLEMHGAERSFMSECEALRSIQHRNLLSIRTACSTGDNTGRVFKALVFDYMPNGNLDMWLHHKEDEKTPNYLNLTQRISIAVNIADALDYLHHDCGRTIVHSDLKPSNILLDDDMNALLGDFGIARLYLDSQSTYQGSVSTIGLKGTIGYIPPEYGGGGHASTLGDVYSFGIMLLEIFTGKRPTDPMFTDGLDIVSFVDRNFPDQIFQVIDVRLKEECNNLSRDNMVSEDTIYQLLVSLLQVALSCTRPSPSERLNMKQAATKIHAINASLHGWNEKKYASVDE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0018330 | OsNaBo_02g0018330.02 | Chr02 | 19718785 | 19719226 | - | IsoSeq | ||
| CDS seq | atgctatcaatgcgtcgcttcacggatggaatgaaaaaaagtatgcctcagttgatgagtagggtgaattgtacaacgtacatggacatacatacattt |
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| Protein seq | MLSMRRFTDGMKKSMPQLMSRVNCTTYMDIHTF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.623286 | 0.0 | 6.781252 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0615400 | SBH | 1.810530 | 3.247144 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g40130 | SBH | 0.573867 | 1.093673 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0615400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0024890 | SBH | 0.266269 | 0.551824 | 0.649657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025040 | SBH | 0.095130 | 0.000000 | 0.117828 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025050 | SBH | 0.778974 | 0.000000 | 0.521185 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0024670 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017890 | RBH | 156.941895 | 6.344275 | 27.008585 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0061400 | SBH | 4.575236 | 3.059625 | 1.525088 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0018050 | RBH | 2.032622 | 0.0 | 1.961450 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0024850 | SBH | 25.960310 | 0.035675 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017750 | RBH | 10.666207 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0018710 | SBH | 98.102180 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0024690 | SBH | 0.035031 | 0.082412 | 0.021348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0018210 | SBH | 1.192473 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G018630 | RBH | 4.565516 | 0.0 | 2.902146 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011080 | SBH | 0.0 | 5.200906 | 3.246101 |
