Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0003470 | OGI:02008180 | 9/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:2480089-2482100 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gacgaggtcgtagctccgacgaccacgccacaggcggcgcaaagagctgacggcccAgatcctggcatcgggagccacgccgctgcgcccgccgatggcgacggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggctgctacaccttcctccgctccgcgtctcgccgcggcGggcactggcgcctcgactcctccgcctccgcgtccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggagagaggaacttgttCccccgtcgaCctggccgtgctcgaggccgggccggtgcggcgcctcctcgcggcggccgggcggcggacccgcggtggcggtcgccgtggacgcgttgctgttcgagcacctgtggtggctgcagccgacgccgacttcgtcccTcccctcaccatcgtgggtcatcgattCccctaacagccgacccctcgcgccgcccgactccgtcgacgtcatcgccttgccatcgtcggccgacgcgccgccaccgcgccgccgccGccctCccacgcagcAgatccatgccgcaagaCgtccatcggCcacaaccgtcgctgccctcccctgcagcagatcaacgccacCGgccgccgccctcgatcacaacgtgaTTtggaggtggagaagcttggtgtGttacgagttcattctcaaatccgctaCcctcgatgacagcccaggctgcggcttcttcgccaacaccagggtcaaccttgccaacgatatgtgagttagcttcttcctctctacggagatttctggtgatttttgtttaggcggaacagcgactacacgctgatgcggTtgctggcacaggcggacgccatcaacTtcatcttcttcaccaagatggacattggtgggttgttgtgctgccttcaattatgcagggTtgggttggactctatgaGggtttcgagggcgtgtgcatttgttgaccatggctgcgggtggtcctcacaccaacagcggccggtgactccatgAagtatcttgtctggAtggacggtgaGtgaatggctttcTtttttaacTttgtgactggccctaattgccacctaTttctatacattcacctgttcatccagcgattccagAatgtggcagtggcagtgcggcttgccttgatttggtttgttgtgctccacgaTtatcagttcAgaatgtcagataagtgaaggttggttggttaggtagcaggaagttccctgatcaatctgttatttgtcaaaatgtgacaagcatacttatctcTttgttttgtaatgtggtgctatctagctgggatgtcggtagcggtcgttgtagtggctgcggcgacgattgcttcttCcttggatgggagccaccgTtcgccgaccttgctgccgccgacgcccgcatatcCTtCcatgtctgtgTgccagaggtaaacggcagtttcttctgttcttccaccgttgtgctgatgaatgttgtgcacctccttgtttgagctcggccatggaggagtcaCcggtatctctgggctggcggtgctagaacagtacacacGgtcgtgttgccggtggagctggacggCcttttcagggtgggTtcctgcaggacagggcaaagacgatggTTttgttgaggaaTttctgtgacgttatgagCcattatgttgatctgcttctgttttCcttccaggaTttgtgggatgcaagcagcagcAgaaacagcgaccgagcacgtccgatTCcagctacgttcagcgtcatgtatgggAaggtGgggatcagtgccgacacacacccccagttctacctCcgattaTttcttcagcgatagtcTtaattaatagctcttgtgggcagTcattgacaGgcatggtgtgtacttaactgcttattgaaatggtcaggtttactttccattcgtaccGgttcatgcattgttctgctccaaatattttcctttattcgaggggattggcggatgttcgcacagg
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| CDS seq | atggTtgggttggactctatgaGggtttcgagggcgtgtgcatttgttgaccatggctgcgggtggtcctcacaccaacagcggccgcgattccagAatgtggcagtggcagtgcggcttgccttgatttggtttgttgtgctccacgaTtatcagttcAgaatctgggatgtcggtagcggtcgttgtagtggctgcggcgacgattgcttcttCcttggatgggagccaccgTtcgccgaccttgctgccgccgacgcccgcatatcCTtCcatgtctgtgTgccagagctcggccatggaggagtcaCcggtatctctgggctggcggtgctagaacagtacacacGgtcgtgttgccggtggagctggacggCcttttcagggaTttgtgggatgcaagcagcagcAgaaacagcgaccgagcacgtccgatTCcagctacgttcagcgtcatgtatgggAaggtGgggatcagtgccgacacacacccccagttctacctCcgattaTttcttcagcgatagtcTtaattaa
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| Protein seq | MVGLDSMRVSRACAFVDHGCGWSSHQQRPRFQNVAVAVRLALIWFVVLHDYQFRIWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPELGHGGVTGISGLAVLEQYTRSCCRWSWTAFSGICGMQAAAETATEHVRFQLRSASCMGRWGSVPTHTPSSTSDYFFSDSLN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0003470 | OsNaBo_02g0003470.01 | Chr02 | 2480089 | 2482100 | + | NAM | ||
| CDS seq | atggTtgggttggactctatgaGggtttcgagggcgtgtgcatttgttgaccatggctgcggctgggatgtcggtagcggtcgttgtagtggctgcggcgacgattgcttcttCcttggatgggagccaccgTtcgccgaccttgctgccgccgacgcccgcatatcCTtCcatgtctgtgTgccagagctcggccatggaggagtcaCcggtatctctgggctggcggtgctagaacagtacacacGgtcgtgttgccggtggagctggacggCcttttcagggaTttgtgggatgcaagcagcagcAgaaacagcgaccgagcacgtccgatTCcagctacgttcagcgtcatgtatgggAaggtGgggatcagtgccgacacacacccccagttctacctCcgattaTttcttcagcgatagtcTtaattaa
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| Protein seq | MVGLDSMRVSRACAFVDHGCGWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPELGHGGVTGISGLAVLEQYTRSCCRWSWTAFSGICGMQAAAETATEHVRFQLRSASCMGRWGSVPTHTPSSTSDYFFSDSLN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0003470 | OsNaBo_02g0003470.03 | Chr02 | 2480089 | 2482100 | + | NAM | ||
| CDS seq | atggTtgggttggactctatgaGggtttcgagggcgtgtgcatttgttgaccatggctgcgggtggtcctcacaccaacagcggccgcgattccagAatgtggcagtggcagtgcggcttgccttgatttggtttgttgtgctccacgaTtatcagttcAgaatctgggatgtcggtagcggtcgttgtagtggctgcggcgacgattgcttcttCcttggatgggagccaccgTtcgccgaccttgctgccgccgacgcccgcatatcCTtCcatgtctgtgTgccagaggaTttgtgggatgcaagcagcagcAgaaacagcgaccgagcacgtccgatTCcagctacgttcagcgtcatgtatgggAaggtGgggatcagtgccgacacacacccccagttctacctCcgattaTttcttcagcgatag
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| Protein seq | MVGLDSMRVSRACAFVDHGCGWSSHQQRPRFQNVAVAVRLALIWFVVLHDYQFRIWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPEDLWDASSSRNSDRARPIPATFSVMYGKVGISADTHPQFYLRLFLQR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0003470 | OsNaBo_02g0003470.02 | Chr02 | 2480089 | 2482100 | + | NAM | ||
| CDS seq | atggTtgggttggactctatgaGggtttcgagggcgtgtgcatttgttgaccatggctgcgggtggtcctcacaccaacagcggccgcgattccagAatgtggcagtggcagtgcggcttgccttgatttggtttgttgtgctccacgaTtatcagttcAgaatctgggatgtcggtagcggtcgttgtagtggctgcggcgacgattgcttcttCcttggatgggagccaccgTtcgccgaccttgctgccgccgacgcccgcatatcCTtCcatgtctgtgTgccagagctcggccatggaggagtcaCcggtatctctgggctggcggtgctagaacagtacacacGgtcgtgttgccggtggagctggacggCcttttcagggaTttgtgggatgcaagcagcagcAgaaacagcgaccgagcacgtccgatTCcagctacgttcagcgtcatgtatgggAaggtGgggatcagtgccgacacacacccccagttctacctCcgattaTttcttcagcgatagtcTtaattaa
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| Protein seq | MVGLDSMRVSRACAFVDHGCGWSSHQQRPRFQNVAVAVRLALIWFVVLHDYQFRIWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPELGHGGVTGISGLAVLEQYTRSCCRWSWTAFSGICGMQAAAETATEHVRFQLRSASCMGRWGSVPTHTPSSTSDYFFSDSLN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr02 | 2481539 | 2481800 | + | OsNaBo_02g0003470.01,OsNaBo_02g0003470.02 | OsNaBo_02g0003470.01,OsNaBo_02g0003470.03,OsNaBo_02g0003470.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.399019 | 11.053712 | 4.101878 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0003491 | RBH | 0.465791 | 3.575087 | 7.306078 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003581 | RBH | 0.136410 | 3.160045 | 2.704578 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003521 | RBH | 0.575022 | 1.217618 | 4.616687 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015490 | SBH | 0.017261 | 0.161982 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003571 | RBH | 0.000000 | 0.0 | 16.755424 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0041300 | RBH | 1.7922885 | 10.097652 | 4.91058 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015170 | SBH | 0.276571 | 0.787004 | 2.877324 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0044900 | RBH | 2.148527 | 5.4499465 | 8.818985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015730 | SBH | 0.086728 | 0.171850 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003441 | RBH | 0.327620 | 8.609049 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0015790 | SBH | 25.791712 | 69.268921 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015600 | SBH | 0.214543 | 2.018135 | 2.009358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0015320 | SBH | 0.202760 | 8.087991 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003540 | SBH | 0.425173 | 2.590117 | 1.822117 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
