Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_02g0003491 | OGI:02008180 | 9/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr02:2577398-2579600 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCGACCAATATTTTTGCTCCATTAAAATCGTATTATTTGTAAAAAAAATTCCTGTCATTCTCCCCTCCTCCCCTTCGTCTCACCCTCTCCCTCCGCCGTCGCCATCGTGCCACCGCCGCCTCCTCCACCTCCTCCGCCACCGCCGTCGCATCGCCGTCTCGGAGGTCGGAGCTCGTCCGCCTCCGCCTCGCGCCGTCGCCGAGCGCAGCCGTCTCCGCCGAGCAACGGTGAAGGCGGGCGCAGCCTTCATCAGCGACGAGGTCGTAGCTCCGACGACCACGCCACAGGCGGCGCAAAGAGCTGACGGCCCAGATCCTGGCATCGGGAGCCACGCCGCTGCGCCCGCCGATGGCGACGGCGAGGAGGAGGAGGAGGCCCCGTCGCCGCGTCCGTCCTCCGCCGGCTGCTACACCTTCCTCCGCTCCGCGTCTCGCCGCGGCGGGCACTGGCGCCTCGACTCCTCCGCCTCCGCGTCCGCGGCGGCGCATGTGGTCAGGGTGGAGGTGGGGACGACGAAGGGAGAGAGGAACTTGTTCCCCCGTCGACCTGGCCGTGCTCGAGGCCGGGCCGGTGCGGCGCCTCCTCGCGGCGGCCGGGCGGCGGACCCGCGGTGGCGGTCGCCGTGGACGCGTTGCTGTTCGAGCACCTGTGGTGGCTGCAGCCGACGCCGACTTCGTCCCTCCCCTCACCATCGTGGGTCATCGATTCCCCTAACAGCCGACCCCTCGCGCCGCCCGACTCCGTCGACGTCATCCCTCCCCTTGCCATCGTCGGCCGACGCGCCGCCACCGCGCCGCCGCCGCCCTCCCACGCAGCAGATCCATGCCGCAAGACGTCCATCGGCCACAACCGTCGCTGCCCTCCCCTGCAGCAGATCCACGCCACCGGCCGCCGCCCTCGATCACAACGTGATTTGGAGGTGGAGAAGCTTGGTGTGTTACGAGTTCATTCTCAAATCCGCTACCCTCGATGACAGCCCAGGCTGCGGCTTCTTCGCCAACACCAGGGTCAACCTTGCCAACGATATGTGAGTTAGCTTCTTCCTCTCTACGGAGATTTCTGGTGATTTTTGTTTAGGCGGAACAGCGACTACACGCTGATGCGGTTGCTGGCACAGGCGGACGCCATCAACTTCATCTTCTTCACCAAGATGGACATTGGTGGGTTGTTGTGCTGCCTTCAATTATGCAGGGTTGGGTTGGACTCTATGAGGGTTTCGAGGGCGTGTGCATTTGTTGACCATGGCTGCGGGTGGTCCTCACACCAACAGCGGCCGGTGACTCCATGAAGTATCTTGTCTGGATGGACGGTGAGTGAATGGCTTTCTTTTTTAACTTTGTGACTGGCCCTAATTGCCACCTATTTCTATACATTCACCTGTTCATCCAGCGATTCCAGAATGTGGCAGTGGCAGTGCGGCTTGCCTTGATTTGGTTTGTTGTGCTCCACGATTATCAGTTCAGAATGTCAGATAAGTGAAGGTTGGTTGGTTAGGTAGCAGGAAGTTCCCTGATCAATCTGTTATTTGTCAAAATGTGACAAGCATACTTATCTCTTTGTTTTGTAATGTGGTGCTATCTAGCTGGGATGTCGGTAGCGGTCGTTGTAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATATCCTTCCATGTCTGTGTGCCAGAGGTAAACGGCAGTTTCTTTCTGTTCTTCCACCGTTTGTGCTGATGAATGTTGTGCATTCCCTCCTTGTTTGAGCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGTGGGTTCCTGCAGGACAGGGCAAAGACGATGGTTTTGTTGAGGAATTTCTGTGACGTTATGAGCCATTATGTTGATCTGCTTCTGTTTTCCTTCCAGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAGTCTTAATTAATAGCTCTTGTGGCCAGTCATTGACAGGCATGGTGTGTACTTAACTGCTTATTGAAATGGTCAGGTTTACTTTCCATT
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| CDS seq | ATGTTGTGCATTCCCTCCTTGTTTGAGCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAGTCTT |
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| Protein seq | MLCIPSLFELGHGGVTGISGLAVLEQYTRSCCRWSWTAFSGICGMQAAAETATEHVRFQLRSASCMGRWGSVPTHTPSSTSDYFFSDSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_02g0003491 | OsAzu_02g0003491.01 | Chr02 | 2577398 | 2579600 | + | IsoSeq | ||
| CDS seq | ATGTTGTGCATTCCCTCCTTGTTTGAGCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAGTCTT
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| Protein seq | MLCIPSLFELGHGGVTGISGLAVLEQYTRSCCRWSWTAFSGICGMQAAAETATEHVRFQLRSASCMGRWGSVPTHTPSSTSDYFFSDSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.465791 | 3.575087 | 7.306078 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0003581 | RBH | 0.136410 | 3.160045 | 2.704578 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0003521 | RBH | 0.575022 | 1.217618 | 4.616687 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0003571 | RBH | 0.000000 | 0.0 | 16.755424 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003441 | RBH | 0.327620 | 8.609049 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003470 | RBH | 0.399019 | 11.053712 | 4.101878 |
