Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_02G003540 | OGI:02008180 | 9/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr02:2464828-2467069 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACCGACCAATATTTTTGCTCCATTAAAATCGTATTATTTGTAAAAAAATTTCCTGTCATTCTCCCCTCCTCCCCTTCGTCTCACCCTCTCCCTCCGCCGTCGCCATCGTGCCACCGCCGCCTCCTCCACCTCCTCCGCCACCGCCGTCGCATCGCCGTCTCGGAGGTCGGAGCTCGTCCGCCTCCGCCTCGCGCCGTCGCCGAGCGCAGCCGTCTCCGCCGAGCAACGGTGAAGGCGGGCGCAGCCTTCATCAGCGACGAGGTCGTAGCTCCGACGACCACGCCACAGGCGGCGCAAAGAGCTGACGGCCCAGATCCTGGCATCGGGAGCCACGCCGCTGCGCCCGCCGATGGCGACGGCGAGGAGGAGGAGGAGGCCCCGTCGCCGCGTCCGTCCTCCGCCGGCTGCTACACCTTCCTCCGCTCCGCGTCTCGCCGCGGCGGGCACTGGCGCCTCGACTCCTCCGCCTCCGCGTCCGCGGCGGCGCATGTGGTCAGGGTGGAGGTGGGGACGACGAAGGGAGAGAGGAACTTGTTCCCCCGTCGACCTGGCCGTGCTCGAGGCCGGGCCGGTGCGGCGCCTCCTCGCGGCGGCCGGGCGGCGGACCCGCGGTGGCGGTCGCCGTGGACGCGTTGCTGTTCGAGCACCTGTGGTGGCTGCAGCCGACGCCGACTTCGTCCCTCCCCTCACCATCGTGGGTCATCGATTCCCCTAACAGCCGACCCCTCGCGCCGCCCGACTCCGTCGACGTCATCGCCTTGCCATCGTCGGCCGACGCGCCGCCACCGCGCCGCCGCCGCCCTCCCACGCAGCAGATCCATGCCGCAAGACGTCCATCGGCCACAACCGTCGCTGCCCTCCCCTGCAGCAGATCAACGCCACCGGCCGCCGCCCTCGATCACAACGTGATTTGGAGGTGGAGAAGCTTGGTGTGTTACGAGTTCATTCTCAAATCCGCTACCCTCGATGACAGCCCAGGCTGCGGCTTCTTCGCCAACACCAGGGTCAACCTTGCCAACGATATGTGAGTTAGCTTCTTCCTCTCTACGGAGATTTCTGGTGATTTTTGTTTAGGCGGAACAGCGACTACACGCTGATGCGGTTGCTGGCACAGGCGGACGCCATCAACTTCATCTTCTTCACCAAGATGGACATTGGTGGGTTGTTGTGCTGCCTTCAATTATGCAGGGTTGGGTTGGACTCTATGAGGGTTTCGAGGGCGTGTGCATTTGTTGACCATGGCTGCGGGTGGTCCTCACACCAACAGCGGCCGGTGACTCCATGAAGTATCTTGTCTGGATGGACGGTGAGTGAATGGCTTTCTTTTTTAACTTTGTGACTGGCCCTAATTGCCACCTATTTCTATACATTCACCTGTTCATCCAGCGATTCCAGAATGTGGCAGTGGCAGTGCGGCTTGCCTTGATTTGGTTTGTTGTGCTCCACGATTATCAGTTCAGAATGTCAGATAAGTGAAGGTTGGTTGGTTAGGTAGCAGGAAGTTCCCTGATCAATCTGTTATTTGTCAAAATGTGACAAGCATACTTATCTCTTTGTTTTGTAATGTGGTGCTATCTAGCTGGGATGTCGGTAGCGGTCGTTGTAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATATCCTTCCATGTCTGTGTGCCAGAGGTAAACGGCAGTTTCTTTCTGTTCTTCCACCGTTTGTGCTGATGAATGTTGTGCATTCCCTCCTTGTTTGAGCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGTGGGTTCCTGCAGGACAGGGCAAAGACGATGGTTTTGTTGAGGAATTTCTGTGACGTTATGAGCCATTATGTTGATCTGCTTCTGTTTTCCTTCCAGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAGTCTTAATTAATAGCTCTTGTGGGCAGTCATTGACAGGCATGGTGTGTACTTAACTGCTTATTGAAATGGTCAGGTTTACTTTCCATTCGTACCGGTTCATGCATTGTTCTGCTCCAAATATTTTCCTTT
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| CDS seq | ATGGTTGGGTTGGACTCTATGAGGGTTTCGAGGGCGTGTGCATTTGTTGACCATGGCTGCGGCTGGGATGTCGGTAGCGGTCGTTGTAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATATCCTTCCATGTCTGTGTGCCAGAGGTAAACGGCAGTTTCTTTCTGTTCTTCCACCCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAG
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| Protein seq | MVGLDSMRVSRACAFVDHGCGWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPEVNGSFFLFFHPRPWRSHRYLWAGGARTVHTVVLPVELDGLFRDLWDASSSRNSDRARPIPATFSVMYGKVGISADTHPQFYLRLFLQR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G003540 | OsN22_02G003540_01 | Chr02 | 2465084 | 2467069 | + | NAM | ||
| CDS seq | ATGGTTGGGTTGGACTCTATGAGGGTTTCGAGGGCGTGTGCATTTGTTGACCATGGCTGCGGCTGGGATGTCGGTAGCGGTCGTTGTAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATATCCTTCCATGTCTGTGTGCCAGAGGTAAACGGCAGTTTCTTTCTGTTCTTCCACCCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAG
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| Protein seq | MVGLDSMRVSRACAFVDHGCGWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPEVNGSFFLFFHPRPWRSHRYLWAGGARTVHTVVLPVELDGLFRDLWDASSSRNSDRARPIPATFSVMYGKVGISADTHPQFYLRLFLQR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G003540 | OsN22_02G003540_02 | Chr02 | 2465084 | 2467069 | + | NAM | ||
| CDS seq | ATGGTTGGGTTGGACTCTATGAGGGTTTCGAGGGCGTGTGCATTTGTTGACCATGGCTGCGGGTGGTCCTCACACCAACAGCGGCCGCGATTCCAGAATGTGGCAGTGGCAGTGCGGCTTGCCTTGATTTGGTTTGTTGTGCTCCACGATTATCAGTTCAGAATCTGGGATGTCGGTAGCGGTCGTTGTAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATATCCTTCCATGTCTGTGTGCCAGAGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAG
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| Protein seq | MVGLDSMRVSRACAFVDHGCGWSSHQQRPRFQNVAVAVRLALIWFVVLHDYQFRIWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPEDLWDASSSRNSDRARPIPATFSVMYGKVGISADTHPQFYLRLFLQR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G003540 | OsN22_02G003540_03 | Chr02 | 2464828 | 2467024 | + | IsoSeq | ||
| CDS seq | ATGTTGTGCATTCCCTCCTTGTTTGAGCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAGTCTT
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| Protein seq | MLCIPSLFELGHGGVTGISGLAVLEQYTRSCCRWSWTAFSGICGMQAAAETATEHVRFQLRSASCMGRWGSVPTHTPSSTSDYFFSDSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 2466101 | 2466215 | + | OsN22_02G003540_03 | OsN22_02G003540_02,OsN22_02G003540_03 | All |
| A5 | Chr02 | 2466534 | 2466800 | + | OsN22_02G003540_03 | OsN22_02G003540_02,OsN22_02G003540_03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.425173 | 2.590117 | 1.822117 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015590 | SBH | 0.106985 | 2.471526 | 6.348403 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015730 | SBH | 0.000000 | 2.555236 | 1.581010 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015630 | SBH | 0.690733 | 3.487757 | 7.815608 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015490 | SBH | 0.017261 | 0.161982 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0015380 | SBH | 3.522644 | 17.653049 | 22.338383 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0041300 | RBH | 1.7922885 | 10.097652 | 4.91058 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015170 | SBH | 0.276571 | 0.787004 | 2.877324 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0044900 | RBH | 2.148527 | 5.4499465 | 8.818985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015730 | SBH | 0.086728 | 0.171850 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0015280 | SBH | 0.437121 | 4.943179 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0015790 | SBH | 25.791712 | 69.268921 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015600 | SBH | 0.214543 | 2.018135 | 2.009358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0015320 | SBH | 0.202760 | 8.087991 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G015770 | RBH | 0.827148 | 1.179726 | 3.077831 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015490 | SBH | 0.924331 | 13.445176 | 8.242355 |
