Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_02g0015630 OGI:02041130 | 16/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr02:14548365-14553412
Gene Symbol -
DNA seq

acaaattgcacacaggcatcttgatatttagaggtctctaatagcagtaagtacatatatagatggttcttcatattaggaggttccatgattaccatgtaaggcctagaactaatacatgttatcttgacagtgatcaacctggttgatggcagcaaaaggatggctgcaacatagccatgagtattgctatgttctttatagaacatcgaaggtggcttccaggcgagttgttttgtagaaatggaaggtgcatagtgattgtaggtatatgtgattgtgggttgcaaattttgcccatcctttcttcaggttgcatcgaccatccgttgacatatggaggatcatattctttgaaacaccacctgcaatttgaactccaatgctgatggtttccttgccttccattaatggctttaagtagtcttgagaaaattctttagtacagtactgtaattggcattgtatatcagccttgactcataattggtaagatagatagccatgtatggtgtatataaataaatgagtagcagatgtaggaacttacaactctatcctgcttcatgaatgtgttattcacagcaacagcatagaatttgcttgaacggtctaggcactcaagatcttcgatatactttttcaagtcagctgttggatcaacattctttgcacagaaacacagctcgttaaacgcacgcttagtgctgcctgtatgaaaatactcctattagtatttgcattgtttgcgaaagaactgaatgaacatttaaaagttgctgatgaagagagtttttgcaggctgcaactggtacattagcatctaaaaaacttaggacggagttttaagagatctagctgaggagtattcaagctgctagatagggtgtaatgactgtaagtgaagtgaaaattgcataagtataaaatagatgttaggtgtcagctggcggagttttttttaagaaggtcagtgtgagtaaaatgtactgacaacattatacgaagcttggcatgattgttttccatgtagttttatcatgcgagattatttgatcttcattatactgtgtgaacaaatttaattaatttacataaaacaaggattagatttacctgtcatggtggtgttggaaggggtatcagatgatagatcagttttagtgttggaagaagtgtctgatgtatctgcatgtggtggatggttggaataaacagtcatttatatatgtgtatctctagatgaagaaacaagcacataagatgggctagatatacaaaaataatagttgtatgagaaatgataaaggataaccttcagtggaagtggcagaaatagtaattgctctggtgtgaggctgatagctgatattgataccttggatgattgatgcacatgtctgtttgatttgatttgaaactatacaggaaacaaaggaaaggatgtctcggttaattctaaaaatgtctggcgcaacaataaaagccagaggcactgcacaataaaaaacatcgggcaccataaaataaaatccaaaagcagatgggacgacatagacaatttctactttctttctttttaccttgaacaacactctgcatgcggaataaaaaggcacagccaatcaacatatatatatagattaacaaaatctgtctataatcatccacaaaggaaatgcataacaagtgaaccatagacactgataaccttcctctaccaacaattgaggccttatctatataaaaccttaaccggcagtggaaccaacccatccaattaaacacgcatataaacatccactccttacacatcaacgcagatattaaaattttatctcctgtttgcttccatgcaattagtagatggcaagctgcagcaaaggtaaatataatagaaaattacacaggggaccacaagccaacggaatgcaccatgccagcagaaatgaaatagaaaatcacatagggtaccacaaggcaatggaatgcaccatgctagcagaaacacagggacataaaccaacatgcaaacaccagtaagaacgagcaaaagcggcatcgaatgctgcatgagcacctggaaacaaaatagatgaaactggaacactctatgtttctgcaggcactctaccaatagcatatataactgaacatctaccagaaataaaggaatcctatcacaccgacctttaaataacaaaatgtagtgaccagcacctaaggaacatgttgacactctacgttcaagctaacaattttttttatcacggatcattttttcccatagcgataaatacacagagaactataaaagagaacatgggcagtgcctttttaagaacaactctatctttttttgataaaggaaagaacgcataagcctctgcacctataatatcaagaaggattctccatcacgccgcaacctcattgcagccatagaagtaaaaggatgtctgaaccaattctaaaactgtttggcacgaaaataaaagccaaaggtattgcacaacaaaaaaacactgagcatgataaaataggatccaaatatagataggacgacacagagaatctccatgctctttctttcaccttgaacaatcctctgcatgcggagtaaataggaacagccaaccaacacatatataaactaacaaaacatgtctataattatctagaaaggaaatctatagcgagcgaggcaagagcattgacaatctccctctaccaaaaattgaggctctatgtatacggaatattaattgacagagaaatcaaacccatccaattaagcagaaacataaatattcccccatcacccatcaatccagatattcaggtttcatttcttatgtgctttcttacaaccagtaaacaacaagccgtggtaaacctaaatatagtagaaaactacacaggacaccacaatccaacgaagtgcaccatggcaatacaaacaaaatagaaaggaaaccggattgccccatgcctgtgcgaacatctgcctatcccctcgaataaaagaaaatatttagagcagaacaatgtatgaaccggtaggaatggaaagtaaacctgatcatttcaataagcagttaagtacacaccatgcctatcaatgactgcccacaagagctattaagactatcactgaagaaagaatcggaggtagaactgggggtgtcggcactgatccccaccttcccatacatgatgctgaacatagctggaatcagacgtgcccggtcgctgttgctgctgttgcttgcatcccacaaatcctggaagggaaacagaagcagatcaacataatggctcataacatcacagaaattcctcgacaaaaccatcatctttgccctgtcctgcaggaacccaccctgaaaaggccgtccagctccctcggcaacgcgaccatgtgtactgttctagcaccgccagcccagagataccagtgactcctccatggccgagctcaaacaaggagggaatgcacagcattcatcagcacaaacggtggaagaacaggaagaaactgccgtttacctctggcacacagacagggaaggatatgcgagcgtcggcagcagcaaggttggcgaacggtggctcccatccaaggaagaagcaatcgtcgccgcggccactacagcgatcgctaccggcatcccagctaggtagcaccacactacaaaacaaagagatcagtatgcttgtcacattttgacaaataacagaatgatcagggaacttcctgctagctaaccaaccaaccttcacttatctgacattctgaactgataatcgtggagcacaacaaatcaaatcaaggcaagccgcactgccactgccacattctggaatcgctggatgaacaggtgaatgtatagaattaggtggcaattagggctagtcagaaagttaaaaaagaaagccagtcactcaccatccatccagacacgatacttcatggagtcacaggctgctgttggtgtgaggaccacccgcagccatggtcagcaatgcacacgccctcgaaaccctcatagagtccaacccaaccctgcataattgaaggcagcacaacaacccaccaatgtccatcttggtgaagaagatgaagttgatggcgtccgcctgtgccagcaaccgcatcaacgtgtagtcgttgttccgcctaaacaaaaatcaccagaaatctctgtagagaggaagaagctaactcacatgtcgttggcaaggttgaccctggtgttggcgaagaagccgcagcctgggctgtcatcgagggtagcggatttgaaaatgaactcgtaccacaccaagcttctccacctccaaatcacattgtgattgagggcggcggccggtggcgtggatctgctgcaggagagggcagcgatggttgtggccagtggacgtcttgcggcatggacctgctgcgtgggagggcagcggcggtggggtggcggcgcgacggccgacgatggcgaggggagggatgacgtcgacggagtcgggcggcgcgaggggtcggctgctaggggaattgatgacccacgatggtgaggggagggacgaagtcggcgtatgctgcagccaccacaggtgctcgaacagcaaagcgtccacggcgaccgccaccgcgccgccgcgggtcagctgcccggccgccgcgaggaggcgccacaccagcccggcctcgagcacggccgggtcgacaggggaacaagctcctctcccccttcgtcgtccccacctccaccctgaccacatgcgccgccgcggaagcggaggcggaggagtcgaggcgccggtgcctgccgcggcgagacgaggatcggaggaaggtgtagcaaccggcggaggacggacgcggcgacggggcctcctcctcctcctcgccgccaccatcggcgggcgcagcggcgtggctcccgatgccaggatctgggccgttagctctttgcgccgcctgtggcgtggtcgtcggaggtccgacctcgtcgctgatgaaggctgtgcccgccttcaccgttgctcgg

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CDS seq

atggtggcggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatcctcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccctgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccatcgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgtcgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtgggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcggtgtggtgctacctagctgggatgccggtagcgatcgctgtagtggccgcggcgacgattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaaggtggggatcagtgccgacacccccagttctacctccgattctttcttcagtgatagtcttaatagctcttgtgggcagtcattgataggcatgagtgttgttcaagatacatcagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcactaagcgtgcgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattaatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccacaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MVAARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPSWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVGWVGLYEGFEGVCIADHGCGVVLPSWDAGSDRCSGRGDDCFFLGWEPPFANLAAADARISFPVCVPEDLWDASNSSNSDRARLIPAMFSIMYGKVGISADTPSSTSDSFFSDSLNSSCGQSLIGMSVVQDTSDTSSNTKTDLSSDTPSNTTMTGSTKRAFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATHNHIYLQSLCTFHFYKTTRLEATFDVL

Function Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0015630 OsCMeo_02g0015630.03 Chr02 14548365 14553281 - NAM
CDS seq

atggtggcggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatcctcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccctgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccatcgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgtcgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtgggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcggtgtggtgctacctagctgggatgccggtagcgatcgctgtagtggccgcggcgacgattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaaggtggggatcagtgccgacacccccagttctacctccgattctttcttcagtgatagtcttaatagctcttgtgggcagtcattgataggcatgagtgttgttcaagatacatcagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcactaagcgtgcgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattaatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccacaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MVAARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPSWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVGWVGLYEGFEGVCIADHGCGVVLPSWDAGSDRCSGRGDDCFFLGWEPPFANLAAADARISFPVCVPEDLWDASNSSNSDRARLIPAMFSIMYGKVGISADTPSSTSDSFFSDSLNSSCGQSLIGMSVVQDTSDTSSNTKTDLSSDTPSNTTMTGSTKRAFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATHNHIYLQSLCTFHFYKTTRLEATFDVL

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0015630 OsCMeo_02g0015630.05 Chr02 14551426 14553281 - NAM
CDS seq

atggtggcggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatcctcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccctgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccatcgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgtcgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtgggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcggtgtggtgctacctagctgggatgccggtagcgatcgctgtagtggccgcggcgacgattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggtaaacggcagtttcttcctgttcttccaccgtttgtgctga

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Protein seq

MVAARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPSWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVGWVGLYEGFEGVCIADHGCGVVLPSWDAGSDRCSGRGDDCFFLGWEPPFANLAAADARISFPVCVPEVNGSFFLFFHRLC

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0015630 OsCMeo_02g0015630.02 Chr02 14548365 14553412 - NAM
CDS seq

atggtcgcgttgccgagggagctggacggccttttcagggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaagcccatcttatatacatcagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcactaagcgtgcgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattaatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccacaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MVALPRELDGLFRDLWDASNSSNSDRARLIPAMFSIMYGKPILYTSDTSSNTKTDLSSDTPSNTTMTGSTKRAFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATHNHIYLQSLCTFHFYKTTRLEATFDVL

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0015630 OsCMeo_02g0015630.01 Chr02 14548365 14553412 - NAM
CDS seq

atggtcgcgttgccgagggagctggacggccttttcagggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaaggtggggatcagtgccgacacccccagttctacctccgattctttcttcagtgatagtcttaatagctcttgtgggcagtcattgataggcatgagtgttgttcaagatacatcagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcactaagcgtgcgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattaatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccacaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MVALPRELDGLFRDLWDASNSSNSDRARLIPAMFSIMYGKVGISADTPSSTSDSFFSDSLNSSCGQSLIGMSVVQDTSDTSSNTKTDLSSDTPSNTTMTGSTKRAFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATHNHIYLQSLCTFHFYKTTRLEATFDVL

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0015630 OsCMeo_02g0015630.07 Chr02 14548365 14552805 - NAM
CDS seq

atggtcgcgttgccgagggagctggacggccttttcagggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaaggtggggatcagtgccgacacccccagttctacctccgattctttcttcagtgatagtcttaatagctcttgtgggcagtcattgataggcatgagtgttgttcaagatacatcagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcactaagcgtgcgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattaatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccacaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MVALPRELDGLFRDLWDASNSSNSDRARLIPAMFSIMYGKVGISADTPSSTSDSFFSDSLNSSCGQSLIGMSVVQDTSDTSSNTKTDLSSDTPSNTTMTGSTKRAFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATHNHIYLQSLCTFHFYKTTRLEATFDVL

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0015630 OsCMeo_02g0015630.04 Chr02 14548365 14553281 - NAM
CDS seq

atggtggcggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatcctcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccctgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccatcgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgtcgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtggcggacgccatcaacttcatcttcttcaccaagatggacattggtgggttgttgtgctgccttcaattatgcagggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcgggtggtcctcacaccaacagcagccttgtggtgctacctagctgggatgccggtagcgatcgctgtagtggccgcggcgacgattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggtaaacggcagtttcttcctgttcttccaccgtttgtgctga

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Protein seq

MVAARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPSWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVADAINFIFFTKMDIGGLLCCLQLCRVGLDSMRVSRACALLTMAAGGPHTNSSLVVLPSWDAGSDRCSGRGDDCFFLGWEPPFANLAAADARISFPVCVPEVNGSFFLFFHRLC

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Gene Transcript Chromosome Start End Strand Source
OsCMeo_02g0015630 OsCMeo_02g0015630.06 Chr02 14551426 14553281 - NAM
CDS seq

atggtggcggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatcctcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccctgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccatcgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgtcgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtggcggacgccatcaacttcatcttcttcaccaagatggacattggtgggttgttgtgctgccttcaattatgcagggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcgggtggtcctcacaccaacagcagcctctgggatgccggtagcgatcgctgtagtggccgcggcgacgattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggtaaacggcagtttcttcctgttcttccaccgtttgtgctga

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Protein seq

MVAARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPSWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVADAINFIFFTKMDIGGLLCCLQLCRVGLDSMRVSRACALLTMAAGGPHTNSSLWDAGSDRCSGRGDDCFFLGWEPPFANLAAADARISFPVCVPEVNGSFFLFFHRLC

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OsCMeo_02g0015630.07OsCMeo_02g0015630.06OsCMeo_02g0015630.05OsCMeo_02g0015630.04OsCMeo_02g0015630.03OsCMeo_02g0015630.02OsCMeo_02g0015630.01AS14548265 bp14549000 bp14550000 bp14551000 bp14552000 bp14553000 bp14554000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr02 14549632 14551568 - OsCMeo_02g0015630.04 OsCMeo_02g0015630.02,OsCMeo_02g0015630.04 All
A3 Chr02 14552040 14552347 - OsCMeo_02g0015630.04 OsCMeo_02g0015630.06,OsCMeo_02g0015630.04 All
A3 Chr02 14552430 14552685 - OsCMeo_02g0015630.04,OsCMeo_02g0015630.06 OsCMeo_02g0015630.05,OsCMeo_02g0015630.03,OsCMeo_02g0015630.06,OsCMeo_02g0015630.04 All
A3 Chr02 14552224 14552314 - OsCMeo_02g0015630.02 OsCMeo_02g0015630.02,OsCMeo_02g0015630.01 All
A5 Chr02 14551648 14551914 - OsCMeo_02g0015630.07,OsCMeo_02g0015630.04,OsCMeo_02g0015630.01,OsCMeo_02g0015630.02,OsCMeo_02g0015630.05,OsCMeo_02g0015630.06 OsCMeo_02g0015630.01,OsCMeo_02g0015630.02,OsCMeo_02g0015630.03,OsCMeo_02g0015630.04,OsCMeo_02g0015630.07,OsCMeo_02g0015630.06,OsCMeo_02g0015630.05 All
A5 Chr02 14552055 14552372 - OsCMeo_02g0015630.07 OsCMeo_02g0015630.07,OsCMeo_02g0015630.03,OsCMeo_02g0015630.05 All
A5 Chr02 14552055 14552347 - OsCMeo_02g0015630.07 OsCMeo_02g0015630.07,OsCMeo_02g0015630.04 All
A5 Chr02 14552055 14552372 - OsCMeo_02g0015630.04 OsCMeo_02g0015630.03,OsCMeo_02g0015630.05,OsCMeo_02g0015630.04 All
A5 Chr02 14552504 14552685 - OsCMeo_02g0015630.01,OsCMeo_02g0015630.02 OsCMeo_02g0015630.01,OsCMeo_02g0015630.02,OsCMeo_02g0015630.06,OsCMeo_02g0015630.04 All

Expression

Leaf Root Panicle
FPKM 0.690733 3.487757 7.815608

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0445700 RBH 1.740147 1.249773 3.904535
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g24750 RBH 0.894089 0.702107 0.709216
Nipponbare | IRGSP 1.0 | RAP-db Os02g0445700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0015590 RBH 0.106985 2.471526 6.348403
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0015730 RBH 0.000000 2.555236 1.581010
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0023340 RBH 2.311965 1.499527 16.450228
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0015490 RBH 0.017261 0.161982 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0015380 RBH 3.522644 17.653049 22.338383
Minghui 63 | MH63RS3 | HZAU OsMH63_02G0233500 RBH 2.7166715 10.261893 9.521911
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_02g0015170 RBH 0.276571 0.787004 2.877324
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0249100 RBH 3.9006985 17.4409895 20.429187
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0015730 RBH 0.086728 0.171850 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0015280 RBH 0.437121 4.943179 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0015790 RBH 25.791712 69.268921 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0015600 RBH 0.214543 2.018135 2.009358
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0015320 RBH 0.202760 8.087991 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G015770 RBH 0.827148 1.179726 3.077831
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0015490 RBH 0.924331 13.445176 8.242355
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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