Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0015730 | OGI:02041130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:15130829-15135826 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccacagtacaaattgcacacaggcatcttgatatttagaggtctctaatagcagtaagtacatatatagatggttcttcatattaggaggttccatgattaccatgtaaggcctagaactaatacatgttatcttgacagtgatcaacctggttgatggcagcaaaaggatggctgcaacatagccatgagtattgctatgttctttatagaacatcgaaggtggcttccaggcgagttgttttgtagaaatggaaggtgcatagtgattgtaggtatatgtgattgcgggttgcaaattttgcccatcctttcttcaggttgcatcgaccatccgttgacatatggaggatcatattctttgaaacaccacctgcaatttgaactccaatgctgatggtttccttgccttccatcaatggctttaagtagtcttgagaaaattctttagtacagtactgtaattggcattgtatatcagccttgactcataattggtaagatagatagccatgtatggtgtatataaataaatgagtagcagatgtaggaacttacaactctatcctgcttcatgaatgtgttattcacagcaacagcatagaatttgcttgaacggtctaggcactcaagatcttcgatatactttttcaagtcagctgttggatcaacattctttgcacagaaacacagctcgttaaacgtacgcttggtgctgcctgtatgaaaatactcctattagtatttgcattgtttgcgaaagaactgaatgaacatttaaaagttgctgatgaagagagtttttgcaggctgcaactggtacattagcatctaaaaaacttaggacggagttttaagagatctagctgaggagtattcaagctgctagatagggcgtaatgactgtaagtgaagtgaaaattgcataagtataaaatagatgttaggtgtcagctggcggagttttttttaagaaggtcagtgtgagtaaaatgtactgacaacattatacgaagcttggcatgattgttttccatgtagttttatcatgcgagattatttgatcttcattatactgtgtgaacaaatttaattaatttacataaaacaaggattagatttacctgtcatggtggtgttggaaggggtatcagatgatagatcagttttagtgttggaagaagtgtctaatgtatctgcatgtggtggatggttggaataaacagtcatttatatatgtgtatctctagatgaagaaacaagcacataagatgggctagatatacaaaaataatagttgtatgagaaatgataaaggataaccttcagtggaagtggcagaaatagtaattgctctggtgtgaggctgatagctgatattgataccttggatgattgatgcacatgtctgtttgatttgatttgaaactatacaggaaacaaaggaaaggatgtctcggttaattctaaaaatgtctggcgcaacgataaaagccagaggcactgcacaataaaaaacatcgggcaccataaaataaaatccaaaagcagatgggacgacatagacaatttctactttatttctttttaccttgaacaacactctgcatgcggaataaaaaggcacagccaatcaacatatatatatagattaacaaaatctgtctataatcatccacaaaggaaatgcataacaagtgaaccatagacactgataaccttcctctaccaacaattgaggccttatctatataaaaccttaaccggcagtggaaccaacccatccaattaaacacgcatataaacatccactccttacacatcaacgcagatattaaaattttatctcctgtttgcttccatgcaattagtagatggcaagctgcagcaaaggtaaatataatagaaaattacacaggggaccacaagccaacggaatgcaccatgccagcagaaatgaaatagaaaatcacatagggtaccacaaggcaatggaatgcaccatgctagcagaaacacagggacataaaccaacatgcaaacaccagtaagaacgagcaaaagcggcatcgaatgctgcatgagcacctggaaacaaaatagatgaaactggaacactctatgtttctgcaggcactctaccaatagcatatataactgaacatctaccagaaataaaggaatcctatcacaccgacctttaaataacaaaatgtagtgaccagcacctaaggaacatgttgacactctacgttcaagctaacaattttttttatcacggatcattttttcccatagcgataaatacacagagaactataaaagagaacatgggcagtgcctttttaagaacaactctatctttttttgataaaggaaagaacgcataagcctctgcacctataatatcaagaaggattctccatcacgccgcaacctcattgcagccatagaagtaaaaggatgtctgaaccaattctaaaactgtttggcacgaaaataaaagccaaaggtattgcacaacaaaaaaacactgagcatgataaaataggatccaaatatagataggacgacacagagaatctccatgctctttctttcaccttgaacaatcctctgcatgcggagtaaataggaacagccaaccaacacatatataaactaacaaaacatgtctataattatctagaaaggaaatctatagcgagcgaggcaagagcattgacaatctccctctaccaaaaatcgaggctctatgtatacggaatattaattgacagagaaatcaaacccatccaattaagcagaaacataaatattcccccatcacccatcaatccagatattcaggtttcatttcttatgtgctttcttacaaccagtaaacaacaagccgtggtaaacctaaatatagtagaaaactacacaggacaccacaatccaacgaagtgcaccatggcaatacaaacacagggagataaaccacatgcatacaccagtaggcacgagcagtagcggtagctaatgctaaaacgagtacctggcaacaaaatagatgaaaccggattgccccatgcctgtgcgaacatctgcctatcccctcgaataaaagaaaatatttagagcagaacaatgtatgaaccggtaggaatggaaagtaaacctgatcatttcaataagcagttaagtacacaccatgcctatcaatgactgcccacaagagctattaagactatcactgaagaaagaatcggaggtagaactgggggtgtcggcactgatccccaccttcccatacatgatgctgaacatagctggaatcagacgtgcccggtcgctgttgctgctgttgcttgcatcccacaaatcctggaagggaaacagaagcagatcaacataatggctcataacatcacagaaattcctcgacaaaaccatcatctttgccctgtcctgcaggaacccaccctgaaaaggccgtccagctccctcggcaacgcgaccgtgtgtactgttctagcaccgccagcccagagataccagtgactcctccatggccgagctcaaacaaggagggaatgcacagcattcatcagcacaaacggtggaagaacaggaagaaactgccgtttacctctggcacacagacagggaaggatatgcgagcgtcggcagcagcaaggttggcgaacggtggctcccatccaaggaagaagcaattgtcgccgcggccactacagcgatcgctaccggcatcccagctaggtagcaccacactacaaaacaaagagatcagtatgcttgtcacattttgacaaataacagaatgatcagggaacttcctgctagctaaccaaccaaccttcacttatctgacattctgaactgataatcgtggagcacaacaaatcaaatcaaggcaagccgcactgccactgccacattctggaatcgctggatgaacaggtgaatgtatagaattaggtggcaattagggctagtcagaaagttaaaaaagaaagccagtcactcaccatccatccagacacgatacttcatggagtcacaggctgctgttgatgtgaggaccacccgcagccatggtcagcaatgcacacgccctcgaaaccctcatagagtccaacccaaccctgcataattgaaggcagcacaacaacccaccaatgtccatcttggtgaagatgaagttgatggcgtccgcctgtgccagcaaccgcatcaacgtgtagtggttgttccgcctaaacaaaaatcaccagaaatctctgtagagaggaagaagctaactcacatgtcgttggcaaggttgaccctggtgttggcgaagaagccgcagcctgggctgtcatcgagggtagcggatttgaaaatgaactcgtaccacaccaagcttctccacctccaaatcacattgtgattgagggcggcggccggtggcgtggatctgctgcaggagagggcagcgatggttgtggccagtggacgtcttgcggcatggacctgctgcgtgggagggcagcggcggtggggtggcggcgcgtcggccgacgatggcgaggggagggatgacgtcgacggagtcgggcggcgcgaggggtcggctgctaggggaattgatgacccacaatggtgaggggagggacgaagtcggcgtatgctgcagccaccacaggtgctcgaacagcaaagcgtccacggcgaccgccaccgcgccgccgcgggtcagctgcccggccgccgcgaggaggcgccacaccagcccggcctcgagcacggccgggtcgacgggggaacaagctcctctcccccttcgtcgtccccacctccaccctgaccacatgcgccgccgcggaagcggaggcggaggagtcgaggcgccggtgcctgccgcggcgagacgcggatcggaggaaggtgtagcaaccggcggaggacggacgcggcgacggggcctcctcctcctcctcgccgtcaccat
More
|
||||||||||
| CDS seq | atggtgacggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatccgcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccccgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccattgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgacgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtggcggacgccatcaacttcatcttcaccaagatggacattggtgggttgttgtgctgccttcaattatgcagggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcgggtggtcctcacatcaacagcagcctctgggatgccggtagcgatcgctgtagtggccgcggcgacaattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggtaaacggcagtttcttcctgttcttccaccctcggccatggaggagtcactggtatctctgggctggcggtgctagaacagtacacacggtcgcgttgccgagggagctggacggccttttcagggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaaggtggggatcagtgccgacacccccagttctacctccgattctttcttcagtgatagtcttaatagctcttgtgggcagtcattgataggcatgagtgttgttcaagtgcctctggcttttatcgttgcgccagacatttttagaattaaccgagacatcctttcctttgtttcctgtatagtttcaaatcaaatcaaacagacatgtgcatcaatcatccaagatacattagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcaccaagcgtacgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattgatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa
More
|
||||||||||
| Protein seq | MVTARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPLWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVADAINFIFTKMDIGGLLCCLQLCRVGLDSMRVSRACALLTMAAGGPHINSSLWDAGSDRCSGRGDNCFFLGWEPPFANLAAADARISFPVCVPEVNGSFFLFFHPRPWRSHWYLWAGGARTVHTVALPRELDGLFRDLWDASNSSNSDRARLIPAMFSIMYGKVGISADTPSSTSDSFFSDSLNSSCGQSLIGMSVVQVPLAFIVAPDIFRINRDILSFVSCIVSNQIKQTCASIIQDTLDTSSNTKTDLSSDTPSNTTMTGSTKRTFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATRNHIYLQSLCTFHFYKTTRLEATFDVL |
||||||||||
| Function | Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015730 | OsLima_02g0015730.01 | Chr02 | 15130829 | 15135826 | - | NAM | ||
| CDS seq | atggtgacggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatccgcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccccgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccattgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgacgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtggcggacgccatcaacttcatcttcaccaagatggacattggtgggttgttgtgctgccttcaattatgcagggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcgggtggtcctcacatcaacagcagccttgtggtgctacctagctgggatgccggtagcgatcgctgtagtggccgcggcgacaattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggtaaacggcagtttcttcctgttcttccaccctcggccatggaggagtcactggtatctctgggctggcggtgctagaacagtacacacggtcgcgttgccgagggagctggacggccttttcagggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaagacatgtgcatcaatcatccaagatacattagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcaccaagcgtacgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattgatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa
More
|
|||||||
| Protein seq | MVTARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPLWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVADAINFIFTKMDIGGLLCCLQLCRVGLDSMRVSRACALLTMAAGGPHINSSLVVLPSWDAGSDRCSGRGDNCFFLGWEPPFANLAAADARISFPVCVPEVNGSFFLFFHPRPWRSHWYLWAGGARTVHTVALPRELDGLFRDLWDASNSSNSDRARLIPAMFSIMYGKTCASIIQDTLDTSSNTKTDLSSDTPSNTTMTGSTKRTFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATRNHIYLQSLCTFHFYKTTRLEATFDVL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015730 | OsLima_02g0015730.04 | Chr02 | 15130829 | 15135826 | - | NAM | ||
| CDS seq | atggtgacggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatccgcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccccgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccattgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgacgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtggcggacgccatcaacttcatcttcaccaagatggacattggtgggttgttgtgctgccttcaattatgcagggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcgggtggtcctcacatcaacagcagcctctgggatgccggtagcgatcgctgtagtggccgcggcgacaattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggtaaacggcagtttcttcctgttcttccaccctcggccatggaggagtcactggtatctctgggctggcggtgctagaacagtacacacggtcgcgttgccgagggagctggacggccttttcagggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaaggtggggatcagtgccgacacccccagttctacctccgattctttcttcagtgatagtcttaatagctcttgtgggcagtcattgataggcatgagtgttgttcaagtgcctctggcttttatcgttgcgccagacatttttagaattaaccgagacatcctttcctttgtttcctgtatagtttcaaatcaaatcaaacagacatgtgcatcaatcatccaagatacattagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcaccaagcgtacgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattgatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa
More
|
|||||||
| Protein seq | MVTARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPLWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVADAINFIFTKMDIGGLLCCLQLCRVGLDSMRVSRACALLTMAAGGPHINSSLWDAGSDRCSGRGDNCFFLGWEPPFANLAAADARISFPVCVPEVNGSFFLFFHPRPWRSHWYLWAGGARTVHTVALPRELDGLFRDLWDASNSSNSDRARLIPAMFSIMYGKVGISADTPSSTSDSFFSDSLNSSCGQSLIGMSVVQVPLAFIVAPDIFRINRDILSFVSCIVSNQIKQTCASIIQDTLDTSSNTKTDLSSDTPSNTTMTGSTKRTFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATRNHIYLQSLCTFHFYKTTRLEATFDVL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015730 | OsLima_02g0015730.02 | Chr02 | 15130829 | 15135826 | - | NAM | ||
| CDS seq | atggtgacggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatccgcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccccgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccattgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgacgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtgggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcggtgtggtgctacctagctgggatgccggtagcgatcgctgtagtggccgcggcgacaattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaagagtgttgttcaagtgcctctggcttttatcgttgcgccagacatttttagaattaaccgagacatcctttcctttgtttcctgtatagtttcaaatcaaatcaaacagacatgtgcatcaatcatccaagatacattagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcaccaagcgtacgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattgatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa
More
|
|||||||
| Protein seq | MVTARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPLWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVGWVGLYEGFEGVCIADHGCGVVLPSWDAGSDRCSGRGDNCFFLGWEPPFANLAAADARISFPVCVPEDLWDASNSSNSDRARLIPAMFSIMYGKSVVQVPLAFIVAPDIFRINRDILSFVSCIVSNQIKQTCASIIQDTLDTSSNTKTDLSSDTPSNTTMTGSTKRTFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATRNHIYLQSLCTFHFYKTTRLEATFDVL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015730 | OsLima_02g0015730.03 | Chr02 | 15130829 | 15135826 | - | NAM | ||
| CDS seq | atggtgacggcgaggaggaggaggaggccccgtcgccgcgtccgtcctccgccggttgctacaccttcctccgatccgcgtctcgccgcggcaggcaccggcgcctcgactcctccgcctccgcttccgcggcggcgcatgtggtcagggtggaggtggggacgacgaagggggagaggagcttgttcccccgtcgacccggccgtgctcgaggccgggctggtgtggcgcctcctcgcggcggccgggcagctgacccgcggcggcgcggtggcggtcgccgtggacgctttgctgttcgagcacctgtggtggctgcagcatacgccgacttcgtccctcccctcaccattgtgggtcatcaattcccctagcagccgacccctcgcgccgcccgactccgtcgacgtcatccctcccctcgccatcgtcggccgacgcgccgccaccccaccgccgctgccctcccacgcagcaggtccatgccgcaagacgtccactggccacaaccatcgctgccctctcctgcagcagatccacgccaccggccgccgccctcaatcacaatgtgatttggaggtggagaagcttggtgtgggttgggttggactctatgagggtttcgagggcgtgtgcattgctgaccatggctgcggtgtggtgctacctagctgggatgccggtagcgatcgctgtagtggccgcggcgacaattgcttcttccttggatgggagccaccgttcgccaaccttgctgctgccgacgctcgcatatccttccctgtctgtgtgccagaggatttgtgggatgcaagcaacagcagcaacagcgaccgggcacgtctgattccagctatgttcagcatcatgtatgggaaggtggggatcagtgccgacacccccagttctacctccgattctttcttcagtgatagtcttaatagctcttgtgggcagtcattgataggcatgagtgttgttcaagtgcctctggcttttatcgttgcgccagacatttttagaattaaccgagacatcctttcctttgtttcctgtatagtttcaaatcaaatcaaacagacatgtgcatcaatcatccaagatacattagacacttcttccaacactaaaactgatctatcatctgataccccttccaacaccaccatgacaggcagcaccaagcgtacgtttaacgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactgtactaaagaattttctcaagactacttaaagccattgatggaaggcaaggaaaccatcagcattggagttcaaattgcaggtggtgtttcaaagaatatgatcctccatatgtcaacggatggtcgatgcaacctgaagaaaggatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttctacaaaacaactcgcctggaagccaccttcgatgttctataa
More
|
|||||||
| Protein seq | MVTARRRRRPRRRVRPPPVATPSSDPRLAAAGTGASTPPPPLPRRRMWSGWRWGRRRGRGACSPVDPAVLEAGLVWRLLAAAGQLTRGGAVAVAVDALLFEHLWWLQHTPTSSLPSPLWVINSPSSRPLAPPDSVDVIPPLAIVGRRAATPPPLPSHAAGPCRKTSTGHNHRCPLLQQIHATGRRPQSQCDLEVEKLGVGWVGLYEGFEGVCIADHGCGVVLPSWDAGSDRCSGRGDNCFFLGWEPPFANLAAADARISFPVCVPEDLWDASNSSNSDRARLIPAMFSIMYGKVGISADTPSSTSDSFFSDSLNSSCGQSLIGMSVVQVPLAFIVAPDIFRINRDILSFVSCIVSNQIKQTCASIIQDTLDTSSNTKTDLSSDTPSNTTMTGSTKRTFNELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYCTKEFSQDYLKPLMEGKETISIGVQIAGGVSKNMILHMSTDGRCNLKKGWAKFATRNHIYLQSLCTFHFYKTTRLEATFDVL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 15134588 | 15134895 | - | OsLima_02g0015730.01 | OsLima_02g0015730.04,OsLima_02g0015730.01 | All |
| A3 | Chr02 | 15134978 | 15135230 | - | OsLima_02g0015730.01,OsLima_02g0015730.04 | OsLima_02g0015730.04,OsLima_02g0015730.02,OsLima_02g0015730.01,OsLima_02g0015730.03 | All |
| A5 | Chr02 | 15134603 | 15134920 | - | OsLima_02g0015730.01 | OsLima_02g0015730.02,OsLima_02g0015730.01,OsLima_02g0015730.03 | All |
| A5 | Chr02 | 15132431 | 15134116 | - | OsLima_02g0015730.03,OsLima_02g0015730.04 | OsLima_02g0015730.04,OsLima_02g0015730.02,OsLima_02g0015730.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.086728 | 0.171850 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0445700 | RBH | 1.740147 | 1.249773 | 3.904535 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g24750 | RBH | 0.894089 | 0.702107 | 0.709216 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0445700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0015590 | RBH | 0.106985 | 2.471526 | 6.348403 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015730 | RBH | 0.000000 | 2.555236 | 1.581010 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015630 | RBH | 0.690733 | 3.487757 | 7.815608 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0015490 | RBH | 0.017261 | 0.161982 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0015380 | RBH | 3.522644 | 17.653049 | 22.338383 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0233500 | RBH | 2.7166715 | 10.261893 | 9.521911 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015170 | RBH | 0.276571 | 0.787004 | 2.877324 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0249100 | RBH | 3.9006985 | 17.4409895 | 20.429187 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0015280 | RBH | 0.437121 | 4.943179 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0015790 | RBH | 25.791712 | 69.268921 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015600 | RBH | 0.214543 | 2.018135 | 2.009358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0015320 | RBH | 0.202760 | 8.087991 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G015770 | RBH | 0.827148 | 1.179726 | 3.077831 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0015490 | RBH | 0.924331 | 13.445176 | 8.242355 |
