Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_02G0041300 | OGI:02008180 | 9/16 | Minghui 63 | MH63RS3 | HZAU | Chr02:2474377-2475810 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACAGCCCAGGCTGCGGCTTCTTCGCCAACACCAGGGTCAACCTTGCCAACGATATGTGAGTTAGCTTCTTCCTCTCTACGGAGATTTCTGGTGATTTTTGTTTAGGCGGAACAGCGACTACACGCTGATGCGGTTGCTGGCACAGGCGGACGCCATCAACTTCATCTTCTTCACCAAGATGGACATTGGTGGGTTGTTGTGCTGCCTTCAATTATGCAGGGTTGGGTTGGACTCTATGAGGGTTTCGAGGGCGTGTGCATTTGTTGACCATGGCTGCGGGTGGTCCTCACACCAACAGCGGCCGGTGACTCCATGAAGTATCTTGTCTGGATGGACGGTGAGTGAATGGCTTTCTTTTTTAACTTTGTGACTGGCCCTAATTGCCACCTATTTCTATACATTCACCTGTTCATCCAGCGATTCCAGAATGTGGCAGTGGCAGTGCGGCTTGCCTTGATTTGGTTTGTTGTGCTCCACGATTATCAGTTCAGAATGTCAGATAAGTGAAGGTTGGTTGGTTAGGTAGCAGGAAGTTCCCTGATCAATCTGTTATTTGTCAAAATGTGACAAGCATACTTATCTCTTTGTTTTGTAATGTGGTGCTATCTAGCTGGGATGTCGGTAGCGGTCGTTGTAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATATCCTTCCATGTCTGTGTGCCAGAGGTAAACGGCAGTTTCTTTCTGTTCTTCCACCGTTTGTGCTGATGAATGTTGTGCATTCCCTCCTTGTTTGAGCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGTGGGTTCCTGCAGGACAGGGCAAAGACGATGGTTTTGTTGAGGAATTTCTGTGACGTTATGAGCCATTATGTTGATCTGCTTCTGTTTTCCTTCCAGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGTGGGGATCAGTGCCGACACACACCCCCAGTTCTACCTCCGATTATTTCTTCAGCGATAGTCTTAATTAATAGCTCTTGTGGCCAGTCATTGACAGGCATGGTGTGTACTTAACTGCTTATTGAAATGGTCAGGTTTACTTTCCATTCGTACCGGTTCATGCATTGTTCTGCTCCAAATATTTTCCTTTATTCGAGGGGATTGGCGGATGTTCGCACAGGCATGGGGCGATCCGGTTTCATCTATTTTGTTGCCAGGTACTCGTTGTAGCGTTAGCTACCGCTACTGCTCGTGCCTGCTGGCAGTGGCAGTGGCAGGGCAAAGGGTGGTGCACTACTTTGCTATATAG
More
|
||||||||||
| CDS seq | ATGACAGCCCAGGCTGCGGCTTCTTCGCCAACACCAGGGCGGAACAGCGACTACACGCTGATGCGGTTGCTGGCACAGGCGGACGCCATCAACTTCATCTTCTTCACCAAGATGGACATTGGTGGGTTGTTGTGCTGCCTTCAATTATGCAGGGTTGGGTTGGACTCTATGAGGGTTTCGAGGGCGTGTGCATTTGTTGACCATGGCTGCGGGTGCTGGGATGTCGGTAGCGGTCGTTGTAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATATCCTTCCATGTCTGTGTGCCAGAGGTAAACGGCAGTTTCTTTCTGTTCTTCCACCCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGCATGGGGCGATCCGGTTTCATCTATTTTGTTGCCAGGTACTCGTTGTAGCGTTAGCTACCGCTACTGCTCGTGCCTGCTGGCAGTGGCAGTGGCAGGGCAAAGGGTGGTGCACTACTTTGCTATATAG
More
|
||||||||||
| Protein seq | MTAQAAASSPTPGRNSDYTLMRLLAQADAINFIFFTKMDIGGLLCCLQLCRVGLDSMRVSRACAFVDHGCGCWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPEVNGSFFLFFHPRPWRSHRYLWAGGARTVHTVVLPVELDGLFRDLWDASSSRNSDRARPIPATFSVMYGKAWGDPVSSILLPGTRCSVSYRYCSCLLAVAVAGQRVVHYFAI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_02G0041300 | OsMH63_02T0041300.1 | Chr02 | 2474377 | 2475810 | + | maker | ||
| CDS seq | ATGACAGCCCAGGCTGCGGCTTCTTCGCCAACACCAGGGCGGAACAGCGACTACACGCTGATGCGGTTGCTGGCACAGGCGGACGCCATCAACTTCATCTTCTTCACCAAGATGGACATTGGTGGGTTGTTGTGCTGCCTTCAATTATGCAGGGTTGGGTTGGACTCTATGAGGGTTTCGAGGGCGTGTGCATTTGTTGACCATGGCTGCGGGTGCTGGGATGTCGGTAGCGGTCGTTGTAGTGGCTGCGGCGACGATTGCTTCTTCCTTGGATGGGAGCCACCGTTCGCCGACCTTGCTGCCGCCGACGCCCGCATATCCTTCCATGTCTGTGTGCCAGAGGTAAACGGCAGTTTCTTTCTGTTCTTCCACCCTCGGCCATGGAGGAGTCACCGGTATCTCTGGGCTGGCGGTGCTAGAACAGTACACACGGTCGTGTTGCCGGTGGAGCTGGACGGCCTTTTCAGGGATTTGTGGGATGCAAGCAGCAGCAGAAACAGCGACCGAGCACGTCCGATTCCAGCTACGTTCAGCGTCATGTATGGGAAGGCATGGGGCGATCCGGTTTCATCTATTTTGTTGCCAGGTACTCGTTGTAGCGTTAGCTACCGCTACTGCTCGTGCCTGCTGGCAGTGGCAGTGGCAGGGCAAAGGGTGGTGCACTACTTTGCTATATAG
More
|
|||||||
| Protein seq | MTAQAAASSPTPGRNSDYTLMRLLAQADAINFIFFTKMDIGGLLCCLQLCRVGLDSMRVSRACAFVDHGCGCWDVGSGRCSGCGDDCFFLGWEPPFADLAAADARISFHVCVPEVNGSFFLFFHPRPWRSHRYLWAGGARTVHTVVLPVELDGLFRDLWDASSSRNSDRARPIPATFSVMYGKAWGDPVSSILLPGTRCSVSYRYCSCLLAVAVAGQRVVHYFAI
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.7922885 | 10.097652 | 4.91058 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0015380 | SBH | 3.522644 | 17.653049 | 22.338383 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0015170 | SBH | 0.276571 | 0.787004 | 2.877324 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0044900 | RBH | 2.148527 | 5.4499465 | 8.818985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015730 | SBH | 0.086728 | 0.171850 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0015790 | SBH | 25.791712 | 69.268921 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G003540 | RBH | 0.425173 | 2.590117 | 1.822117 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003470 | RBH | 0.399019 | 11.053712 | 4.101878 |
