Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_09G0383900 | OGI:09066260 | 3/16 | Minghui 63 | MH63RS3 | HZAU | Chr09:24600158-24602449 | ||||||||
| Gene Symbol | Ub-CEP52-2 | ||||||||||
| DNA seq | CTCCTCCCTCGCCGGCATATAAGTAGCCGCAGCCGCCGCCTCCATTTCCCGACCTTGCTCCACACCCGCAGCAGCAGCAGCAGCAAGGAGAAGAAGAAGAGCCAAGATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTACGCTTGCTTAGCATTTAGCAATGCTTCTTCTTCTTCTTCTTGCTCGGTCTCTTTTGCCTGCTTGATTGCTAATCGATCTGCTCCGCGGGGCCTCAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGTGGCATCATCGAGCCCTCCCTCCAGGCCCTCGCCCGCAAGTACAATCAGGACAAGATGATCTGCCGCAAGTACGCTCCTTCTAATTTCCTTCTCCTTGAATGCTCGACTTTTGATTATGCATACTCCTATATATGTTCCTATAGTTTATTATGCTTATGATATGATGCTTGCCTTGTGAGGGTTGGATCTGTGGTTTGTAACTCTATGACGCGTGGCATTGGGTTCCCCATGGGTCCAGAGATTGACAACCCACCTATACTTTGTCTGCTGCCTAGCCTATTTCGGTAGTTGATTTTCACTGGTGGGACATGTTAAATCATTCGTTGTGCCAATCAATTAGATGTGCAGGAATGATGAATCAATTAGATGTGCAGGAATGATGAGTCACTCATACCTAGCAATAAGATAACACAGGGTATATTAATTGAATGAAATAATACATCCTAGAAGATGGTTAAAATGAAAAATGTGCCTCGATAGGTTAGCTCACTTGAAATTTCAAGTCGAAAAGTAGTGTTTTTATCTTCCCAAAACATATGGTAAAGCTCACAAACAAATGACAAAAAAAAAAGCAACTTGCTTTGAAACATAGATGAGCTGATTGGCAGGTCAGACAGAATGTATGCCTCAAAAGTTAAGCTCACAAGGAGACTTCGCACATCTAATTGATTCATCATTCCTGCCAATCTTCTACGCAGTTCCATGTGGAAATTAGCAGATTGGCTGGGATGATGAATCAATTAGATGTGTGAACTCACCTTATGATCTAAAACTTTTGAGGCATAATTACTTTCTGACCTGCCAATCTAGTAACATTCAAAACATTTTTTCACTGTGTTTGGCTCTGATGCTTGGACTGGCATGCCTTGCCAGAAAGTTAGTGTCATTTGCTAATGTTATGCCAGTAGTACCATCATGTATTATAGGCACAGTAGTGCTGCATCTGTTTTCCTGATATTGCTCCCTTTTAGGGTAGACTGAGTTCAGCATGTGAATACATTTCGACTGTTTTCTTGCAGGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGGTGATTATCATTGTTCTATACAAGCAAGTGATTTAGATTTGCTGTTTACTTGGCACCAATGTTCTTTAGTAATAGGAGCAACAGCTAAGGGCACCATTAGATTTTAGAATTTGTATTGACCCTTGCAATTTAGAGCGGTGCAAGTCTGCTGCTCTAATTATGTTTGAAGTAGTGTAGTGTGTTGAGCATATTAGGTTTACATCAGCCTTAGATTTGTGATTTTTTTTAATACTGTTGTGAGAAATTGCACTTGAAATGTCAACCAAGTTTAGTATAGCTTGTTGACAAGTATTCTATATCCTCGCCGAAATGCGTCTTATCTACTGTAGCATCTAAAGTGCTTTCAAATTCCTACCCTTTCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAGAGTTTGAGATATCATTTCCGCGGATCATTGAAATCAACAGGAAGATCAGAGTTTAAGTTTTTTTGTAGTGTAATGCCTCATGTTGTATGCCGAACTTTCTGTTTATCCTGTTGTATGTTAACCTTGGTTACGCTGGAGAGTACTCCAGCTTATTTTGATGACATAATTGACTACAAAGTCAAGGTTATATGGTCCGGCCTTAATTTTTGTCCCCTTCGAAGTTTGCCCCTCATTGTTGTTTGTGGTTGCTACCATGCTGTGATCTGAATTCAAATTGTAAGTTTATAACCGGGCCATCTCAGTTACTACGTGTGATTCGTGTGTTGTCAAGTGGTGATTGGCTACACAGCTCTTGTGGTACAGGCTGCAGATTGGAACGCCTC
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| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGTGGCATCATCGAGCCCTCCCTCCAGGCCCTCGCCCGCAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGGTGATTATCATTGTTCTATACAAGCAAGTGATTTAG |
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQVIIIVLYKQVI |
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| Function | Ubiquitin-60S ribosomal protein L40-2 [UniProtKB/Swiss-Prot:P0CH35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_09G0383900 | OsMH63_09T0383900.1 | Chr09 | 24600158 | 24602449 | + | maker | ||
| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGTGGCATCATCGAGCCCTCCCTCCAGGCCCTCGCCCGCAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_09G0383900 | OsMH63_09T0383900.2 | Chr09 | 24600158 | 24602449 | + | maker | ||
| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGTGGCATCATCGAGCCCTCCCTCCAGGCCCTCGCCCGCAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCTCGGCTGCACCCCAGGGCTGTCAACTGCCGCAAGAAGAAGTGCGGCCACAGCAACCAGGTGATTATCATTGTTCTATACAAGCAAGTGATTTAG
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQVIIIVLYKQVI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_09G0383900 | OsMH63_09T0383900.3 | Chr09 | 24600158 | 24602449 | + | maker | ||
| CDS seq | ATGCAGATCTTCGTGAAGACCCTGACGGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGCGGTGGCATCATCGAGCCCTCCCTCCAGGCCCTCGCCCGCAAGTACAATCAGGACAAGATGATCTGCCGCAAGTACGCTCCTTCTAATTTCCTTCTCCTTGAATGCTCGACTTTTGATTATGCATACTCCTATATATGTTCCTATAGTTTATTATGCTTATGA
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| Protein seq | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKYAPSNFLLLECSTFDYAYSYICSYSLLCL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 59.5420265 | 50.3326055 | 31.6361915 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0628100 | SBH | 18.763294 | 19.687611 | 56.471085 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39500 | RBH | 7.842901 | 6.270913 | 6.391160 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0568400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0004771 | SBH | 23.611549 | 747.267395 | 279.629150 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026321 | SBH | 19.307150 | 171.160156 | 135.050400 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0004741 | SBH | 152.594208 | 376.591431 | 476.852570 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0057300 | SBH | 14.3624845 | 436.7092475 | 640.0060195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026001 | SBH | 8.491142 | 14.054948 | 25.362541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0373400 | RBH | 57.248768 | 21.3651595 | 143.476364 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0026451 | SBH | 17.024366 | 6.984823 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004751 | SBH | 9.700830 | 34.566254 | 65.454994 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
